NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913023
Clone id YMU001_000025_E09
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTAGAAATGATTTGATGGGGTTATGTTATATGAGGCTACATGTCAAATTTTCAAGCAAA
TACATGAGCAAGCTAGTGCCAATCGACTGTAAAACTGGTGATCTTATTCTCTCTCATAAA
CACAAGAACTTGGTTTCTAGAAGTGTTCGTCATAAGCCTCCTCAAAAGATCGCACATCGG
AATCTATTAAGTGAGCACCACACTAGCACCCATTAACCCTTTGCAAACCCTACTAATTAC
AAGCAAAATCGTGGCAGCAGAAAAGTACATGCATTTCCCGGTCAGCATAACAGGCAATGC
TTCCTTGATACTTTTACCCAATCCTTGATGACAACAGCTGGTTTCAACATTCCACCATTC
GTGCGTACGCAGCATTGCAGAACAAGAGCTACAAACCATTTACCCTAACCCGAGACAAAC
TTTATCCCCCTTTGTAATGGAAGCCCTTAATCCACCCTTAACAAA
■■Homology search results ■■ -
sp_hit_id Q5IGR6
Definition sp|Q5IGR6|EXT1C_DANRE Exostosin-1c OS=Danio rerio
Align length 78
Score (bit) 30.4
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913023|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E09.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5IGR6|EXT1C_DANRE Exostosin-1c OS=Danio rerio GN=ext1c PE=2 ...    30   4.0  
sp|Q5AKB1|RNY1B_CANAL Ribonuclease T2-like 1-B OS=Candida albica...    30   5.2  
sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcriptio...    30   6.8  
sp|Q05112|VE1_HPV30 Replication protein E1 OS=Human papillomavir...    29   8.9  
sp|Q13882|PTK6_HUMAN Tyrosine-protein kinase 6 OS=Homo sapiens G...    29   8.9  

>sp|Q5IGR6|EXT1C_DANRE Exostosin-1c OS=Danio rerio GN=ext1c PE=2
           SV=1
          Length = 737

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 28  YMRLHVKFSSKYMSKLVPIDCKTGDLILSHKHKNLVSRSVRHKPPQKIAHRNLLSEHHT- 204
           Y  L   +    +  LV   C   D+++     N +  SV H PP K+A R    E  + 
Sbjct: 621 YHHLFSHYLPSSLRALVDHSCNCEDILM-----NFLVSSVAHLPPVKVAQRKQYKEMPSL 675

Query: 205 --STH*PFANPTNYKQNR 252
             +   P+ANP ++ Q +
Sbjct: 676 QGTKMAPWANPEHFTQRQ 693


>sp|Q5AKB1|RNY1B_CANAL Ribonuclease T2-like 1-B OS=Candida albicans
           GN=RNY1-B PE=3 SV=1
          Length = 413

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +1

Query: 40  HVKFSSKYMSKLVPIDCKTGDLILSHKHKNLVSRSVRHKPPQKIAHRNLLSEHHTSTH*P 219
           HVK  S      +PID        S  H N  S  +++ P  K+AH  L ++  T T   
Sbjct: 241 HVK-GSLLQHNFLPID--------SVAHTNCPSTGIKYPPKGKVAHPTLTTKTTTGTSTT 291

Query: 220 FANPT 234
             NPT
Sbjct: 292 IHNPT 296


>sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcription
           subunit 17 OS=Anopheles gambiae GN=MED17 PE=3 SV=2
          Length = 645

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 175 HRNLLSEHHTSTH*PFANPTNYKQNRGSRKVHAFPGQHNRQCFLD-TFTQSLM 330
           H+ L   HH +TH PF +P +       +++ A P  ++R   L+ T +Q+L+
Sbjct: 372 HQLLREFHHKNTHHPFPHPASGPLGPSKKRMLAGPSAYDRHELLEMTKSQTLL 424


>sp|Q05112|VE1_HPV30 Replication protein E1 OS=Human papillomavirus
           type 30 GN=E1 PE=3 SV=2
          Length = 631

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 14/67 (20%)
 Frame = -1

Query: 381 SAMLRTHEWWNVETSCCHQ------GLGKSIKEALPVMLTGKCMYFS--------AATIL 244
           S ++RT   +  +++CCH       G+ +++ EAL  ++  +CMY+            IL
Sbjct: 202 SELVRT---FKSDSTCCHDWICAMFGVNETLAEALKTIIKSQCMYYHIQCLTCTWGVVIL 258

Query: 243 LVISRVC 223
           ++I   C
Sbjct: 259 MLIRYTC 265


>sp|Q13882|PTK6_HUMAN Tyrosine-protein kinase 6 OS=Homo sapiens
           GN=PTK6 PE=1 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
 Frame = +1

Query: 19  GLCYMR----LHVKFSSKYMSKLVPIDCKTGDLILSHKHKNLVSRSVRHKPPQKIAHRNL 186
           G+CY+     +H   +++ +       CK GD  L+   K  V  S  H  P K      
Sbjct: 299 GMCYLESQNYIHRDLAARNILVGENTLCKVGDFGLARLIKEDVYLSHDHNIPYKWTAPEA 358

Query: 187 LSEHHTSTH*PFANPTNYKQNRGSRKVHAFPGQHNRQCFLDTFTQSLMTTAGFNIP 354
           LS  H ST     +         SR    +PG  N + F       L   AG+ +P
Sbjct: 359 LSRGHYSTKSDVWSFGILLHEMFSRGQVPYPGMSNHEAF-------LRVDAGYRMP 407
tr_hit_id Q4PZB6
Definition tr|Q4PZB6|Q4PZB6_MUSCR Sperm protein CATSPER1 (Fragment) OS=Mus caroli
Align length 83
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913023|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E09.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4PZB6|Q4PZB6_MUSCR Sperm protein CATSPER1 (Fragment) OS=Mus ...    33   5.5  
tr|A7TNA0|A7TNA0_VANPO Putative uncharacterized protein OS=Vande...    33   5.5  
tr|Q49UV3|Q49UV3_STAS1 Putative uncharacterized protein OS=Staph...    33   9.1  
tr|A2UB94|A2UB94_BACCO Fibronectin-binding A-like OS=Bacillus co...    33   9.4  
tr|Q6ATF7|Q6ATF7_ORYSJ Putative uncharacterized protein OSJNBb00...    33   9.4  
tr|A3B230|A3B230_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.4  

>tr|Q4PZB6|Q4PZB6_MUSCR Sperm protein CATSPER1 (Fragment) OS=Mus
           caroli GN=Catsper1 PE=4 SV=1
          Length = 296

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/83 (26%), Positives = 33/83 (39%)
 Frame = +1

Query: 151 HKPPQKIAHRNLLSEHHTSTH*PFANPTNYKQNRGSRKVHAFPGQHNRQCFLDTFTQSLM 330
           H+P + ++H +    H  +TH          Q    R  H  P Q NR  + DT +    
Sbjct: 119 HRPSEPLSHPSSTGSHQGTTH----------QQHFERSQHLNP-QQNRDHYADTISYRSS 167

Query: 331 TTAGFNIPPFVRTQHCRTRATNH 399
           T +  +I PF   +  R  A  H
Sbjct: 168 TRSHRSIAPFSHQERPRLHADPH 190


>tr|A7TNA0|A7TNA0_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_505p9 PE=3 SV=1
          Length = 614

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 136 SRSVRHKPPQKIAHRNLLSEHHTSTH*PFANPTNYKQN 249
           SRS +H PP K++++N+L +  +S + PF  PT  K+N
Sbjct: 15  SRSSKHIPPVKLSYKNMLKD-PSSKYKPFIRPTLNKRN 51


>tr|Q49UV3|Q49UV3_STAS1 Putative uncharacterized protein
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=SSP2318 PE=4 SV=1
          Length = 112

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +2

Query: 92  KLVILFSLINTRTWFLEVFVISLLKRSHIGIY*VSTTLAPINPLQTLLITSKIVAAEKYM 271
           +L+IL +L  T TWF+   VIS+L R ++G    +  L    PL T+LI   I+    Y+
Sbjct: 44  RLIILETLSRTCTWFIYFLVISILTR-YLGPSNTNFDLISKYPLITVLIPLIILGVLNYL 102


>tr|A2UB94|A2UB94_BACCO Fibronectin-binding A-like OS=Bacillus
           coagulans 36D1 GN=BcoaDRAFT_0100 PE=4 SV=1
          Length = 572

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 4   RNDLMGLCYMRLHVKFSSKYMSKLVPIDCKTGDLILSHKHKNLVSRSVRHKPPQKIAHRN 183
           RN++  + + +L+V+   ++            ++IL  K +NL+  S++H PP    +R 
Sbjct: 107 RNEIGDISFKQLYVEIMGRH-----------SNIILVDKERNLIMDSIKHVPPAVNTYRT 155

Query: 184 LLSEH 198
           +L  H
Sbjct: 156 ILPGH 160


>tr|Q6ATF7|Q6ATF7_ORYSJ Putative uncharacterized protein
           OSJNBb0061M13.15 OS=Oryza sativa subsp. japonica
           GN=OSJNBb0061M13.15 PE=4 SV=1
          Length = 1396

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 127 NLVSRSVRHKPPQKIAHRNLLSE-HHTSTH*PFANPTNYKQNRGSRKVHAFPGQHNRQCF 303
           +L SRSVR +   KI + N++ + HHT       NPT+  Q  G      FPG+H R  F
Sbjct: 149 SLSSRSVRRR---KIPNDNIVHQPHHTQLR--QHNPTSAAQPGGDDHRQPFPGRHRRTIF 203


>tr|A3B230|A3B230_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017102 PE=4 SV=1
          Length = 488

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 127 NLVSRSVRHKPPQKIAHRNLLSE-HHTSTH*PFANPTNYKQNRGSRKVHAFPGQHNRQCF 303
           +L SRSVR +   KI + N++ + HHT       NPT+  Q  G      FPG+H R  F
Sbjct: 149 SLSSRSVRRR---KIPNDNIVHQPHHTQLR--QHNPTSAAQPGGDDHRQPFPGRHRRTIF 203