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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913030
Clone id YMU001_000025_F05
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAATGAAGGTTGCCTTCTTACAGAGAGTCTAGAGTTCGGTTCCCTTGGTCCAGGNTTTCT
GGGAAATTCTAAAAAGGTACTTGTCTATGATGGTGGGAGGAGAGACCAAGATGGATGGAG
ATCTCAAAGTTCTCAATCCTTAAAGGGTGGGGACACGACAGATAACGGAGAAGTAACAGC
GAAGAAGATGCTTTTCAGTGATAATCAGCAAAGCTCGTTGAAGCGCTGTTATGAGTTGAA
GGAAGAAGATTTTCCACCTCTGTCTACCAGCAGCCAGATTGGCAAATCTACTACTCCTTT
GAGTGCTCAAAAAGATTCAATCACAGAATGGCCTCATTTGCAAGCTTGTGTTACTGATAG
CTCAATTTGGAACTCACCTAACCTTCAGGAGAGTGTAGATAGGTAGCTGTTAAGAGTCTG
CACACAGAAGAACATTATGGATATTGGCTGTTCCATGGCAACAATTTTGACGCCAAGAGG
GCTTGGCACGGGATTTTGTAAAAGTGCACTGGTAGAGCAATAACACATGTATTT
■■Homology search results ■■ -
sp_hit_id A8X0L9
Definition sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis briggsae
Align length 97
Score (bit) 33.5
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913030|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F05.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis bri...    33   0.66 
sp|Q1RGM9|AK_RICBR Aspartokinase OS=Rickettsia bellii (strain RM...    33   0.86 
sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing prote...    32   1.9  
sp|Q6NPP4|CMTA2_ARATH Calmodulin-binding transcription activator...    31   3.3  
sp|A5UM78|GATB_METS3 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   4.3  
sp|P0ABC7|HFLK_ECOLI Protein hflK OS=Escherichia coli (strain K1...    30   5.6  
sp|P0ABC8|HFLK_ECO57 Protein hflK OS=Escherichia coli O157:H7 GN...    30   5.6  

>sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis briggsae
            GN=lex-1 PE=3 SV=1
          Length = 1221

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = +2

Query: 98   RRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQ 277
            ++DQ   +  SSQ   G DT +  E  A+  + +D          E+KE    P+ T   
Sbjct: 1077 KKDQKRNKKASSQDPDGDDTEETEEAVAENNVDAD---------VEMKETPADPVPTIQS 1127

Query: 278  IGKSTTPLSAQKDSITEWPHLQACVTDSSIWNSPNLQ 388
                   +    DSIT+   ++ CV  S  W+   L+
Sbjct: 1128 SSSQEREIIVSADSITDL--IKLCVEKSEGWSVSELE 1162


>sp|Q1RGM9|AK_RICBR Aspartokinase OS=Rickettsia bellii (strain
           RML369-C) GN=lysC PE=3 SV=1
          Length = 406

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +2

Query: 203 NQQSSLKRCYELKEEDFPPLSTSSQIGKSTTPLSAQKDSITEWPHLQ---ACVTDSSIWN 373
           N+ SSL +  +L E D   LS+   +  S   L+ Q+++I     L      +TD +  +
Sbjct: 55  NEVSSLNKSSQLAEYDVA-LSSGEIVTASLLALALQEENINARSFLAWQLPILTDDN--H 111

Query: 374 SPNLQESVDR*LLRVCTQKNIMDI 445
           S  L ESVD  LL  C Q+NI+ I
Sbjct: 112 SKALVESVDTNLLNECLQQNIIPI 135


>sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1
            OS=Homo sapiens GN=BRWD1 PE=1 SV=3
          Length = 2320

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
 Frame = +2

Query: 26   SLEFGSLGPGFLGNSKKVL------VYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTA-- 181
            SLE G +     GN++KVL        +  +   D   + SS+S+  G    +   +A  
Sbjct: 1611 SLETGEILKARAGNNRKVLRKCAAVAANKIKLMSDVEENSSSESVCSGRKLPHRNASAVA 1670

Query: 182  -KKMLFSDNQQSSLKRCYE---LKEEDFPPLSTSSQIGKSTTPLSAQKDSITE 328
             KK+L +   + SLK   E   LK+E+ P   +SS   +S    S  +DS +E
Sbjct: 1671 RKKLLHNSEDEQSLKSEIEEEELKDENQPLPVSSSHTAQSNVDESENRDSESE 1723


>sp|Q6NPP4|CMTA2_ARATH Calmodulin-binding transcription activator 2
           OS=Arabidopsis thaliana GN=CMTA2 PE=2 SV=1
          Length = 1050

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 26/98 (26%), Positives = 42/98 (42%)
 Frame = +2

Query: 104 DQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQIG 283
           ++DGW S     +KG ++  +G+V A    F    ++SL R   L        +  S  G
Sbjct: 223 NRDGWTSAHGNRVKGSNSQRSGDVPAWDASF----ENSLARYQNLPYNAPLTQTQPSTFG 278

Query: 284 KSTTPLSAQKDSITEWPHLQACVTDSSIWNSPNLQESV 397
                   +K S+    HL+  +     W +P +QESV
Sbjct: 279 LIPMEGKTEKGSLLTSEHLRNPLQSQVNWQTP-VQESV 315


>sp|A5UM78|GATB_METS3 Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861) GN=gatB PE=3 SV=1
          Length = 450

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 56  FLGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSD------NQQSS 217
           FL    +VL Y GG R +   R+  + S++GG+  +   + + K  +         Q++ 
Sbjct: 153 FLKELIRVLQYSGGARGEGTMRADVNISIEGGNRVEMKNINSIKGAYKALKFELVRQKNL 212

Query: 218 LKRCYELKEE 247
           +KR  E+K+E
Sbjct: 213 MKRGVEIKQE 222


>sp|P0ABC7|HFLK_ECOLI Protein hflK OS=Escherichia coli (strain K12)
           GN=hflK PE=1 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 31/86 (36%), Positives = 40/86 (46%)
 Frame = +2

Query: 59  LGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYEL 238
           LGN++KVLV D G    +       Q LKGG+        AK    SDN  S+L R    
Sbjct: 335 LGNTRKVLVNDKG---GNLMVLPLDQMLKGGNAP-----AAK----SDNGASNLLR---- 378

Query: 239 KEEDFPPLSTSSQIGKSTTPLSAQKD 316
                PP S+S+  G S T  ++Q D
Sbjct: 379 ----LPPASSSTTSGASNTSSTSQGD 400


>sp|P0ABC8|HFLK_ECO57 Protein hflK OS=Escherichia coli O157:H7
           GN=hflK PE=3 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 31/86 (36%), Positives = 40/86 (46%)
 Frame = +2

Query: 59  LGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYEL 238
           LGN++KVLV D G    +       Q LKGG+        AK    SDN  S+L R    
Sbjct: 335 LGNTRKVLVNDKG---GNLMVLPLDQMLKGGNAP-----AAK----SDNGASNLLR---- 378

Query: 239 KEEDFPPLSTSSQIGKSTTPLSAQKD 316
                PP S+S+  G S T  ++Q D
Sbjct: 379 ----LPPASSSTTSGASNTSSTSQGD 400
tr_hit_id Q3TP41
Definition tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 130
Score (bit) 37.7
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913030|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F05.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus m...    38   0.37 
tr|Q23EB6|Q23EB6_TETTH Cation channel family protein OS=Tetrahym...    36   1.4  
tr|B5Y5D8|B5Y5D8_PHATR Predicted protein OS=Phaeodactylum tricor...    35   2.4  
tr|B4HME4|B4HME4_DROSE GM20545 OS=Drosophila sechellia GN=GM2054...    35   2.4  
tr|Q5U9P6|Q5U9P6_CHEDE PaxIII-PAID (Fragment) OS=Cherax destruct...    34   5.4  
tr|A8P077|A8P077_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   5.4  
tr|B4IDY1|B4IDY1_DROSE GM11265 OS=Drosophila sechellia GN=GM1126...    33   7.0  
tr|Q2NDZ8|Q2NDZ8_ERYLH Putative uncharacterized protein OS=Eryth...    33   9.2  

>tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Csn1s2a PE=2 SV=1
          Length = 183

 Score = 37.7 bits (86), Expect = 0.37
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
 Frame = +2

Query: 11  CLLTESLEFGSLGPGFLGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKM 190
           CL+  +L    +            +Y G + D   +   +  S     + ++ E  ++K+
Sbjct: 8   CLVVVALAKHEIKDKSSSEESSASIYPGSKLDNSVFFQTTKDSASSSSSEESSEEVSEKI 67

Query: 191 LFSDNQQSSLKRCYELKEEDFPPLSTSSQIGKSTTPL-SAQKDSITEWPHLQACVTDSSI 367
           + S+ Q+ +L      +++ F   S  S   +  TPL   Q+ S+ +WP        ++I
Sbjct: 68  VQSEEQKVNLN-----QQKKFKQFSQESSFSQCCTPLHQQQQSSVNQWPQ------PNAI 116

Query: 368 WNSPNLQESV 397
            N+P  QES+
Sbjct: 117 HNTPT-QESI 125


>tr|Q23EB6|Q23EB6_TETTH Cation channel family protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00717620 PE=4 SV=2
          Length = 1321

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 104  DQDGWRSQSSQS-LKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQI 280
            DQ+   +Q+SQS LK  D + N  +  K M  SD   +S  + +++       + +  QI
Sbjct: 786  DQNSSTNQTSQSSLK--DNSSNKSINEKYMFKSDRSLNSTLKDHQVNNNSLKLIKSQIQI 843

Query: 281  GKSTTPLSAQKDSITE 328
            GK ++ +  Q+DS+ +
Sbjct: 844  GKQSSQVKNQRDSLKD 859


>tr|B5Y5D8|B5Y5D8_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATR_33473 PE=4 SV=1
          Length = 383

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
 Frame = +2

Query: 50  PGFLGNSKKVLVYDGGR----RDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSS 217
           P  +G SK +     G+    + Q GW  + S S KG    +  +V  KK+++    + +
Sbjct: 192 PKAMGASKPLKAVQKGKAVEAKKQGGWFGKPSNSKKGATAAEPKQV--KKIVYKVPAKQN 249

Query: 218 LK-RCYELKEEDFPPLSTSSQIGKSTTPLSAQKDSIT 325
           L     E K+E   P   S+++ KSTTPL+A   S+T
Sbjct: 250 LPPSASETKQE---PAFVSARL-KSTTPLAAASSSVT 282


>tr|B4HME4|B4HME4_DROSE GM20545 OS=Drosophila sechellia GN=GM20545
           PE=4 SV=1
          Length = 845

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 24/81 (29%), Positives = 31/81 (38%)
 Frame = +2

Query: 119 RSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQIGKSTTP 298
           RS S  SL    +  N     K M  + +Q+ SLKR  E      PPL+T      ST  
Sbjct: 330 RSSSFSSLSSFSSISNISSVCKNMASNTSQEGSLKRTKERTPPPMPPLTTHKPAATSTAT 389

Query: 299 LSAQKDSITEWPHLQACVTDS 361
            +    S T      A  T +
Sbjct: 390 SATSAASATSAATASATATSA 410


>tr|Q5U9P6|Q5U9P6_CHEDE PaxIII-PAID (Fragment) OS=Cherax destructor
           PE=2 SV=1
          Length = 139

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 31/140 (22%)
 Frame = +2

Query: 2   NEGC---LLTESLEFGSLGPGFLGNSK-KVLVYD---------------GGRRDQDGWRS 124
           + GC   +L    E GS+ PG +G SK K  V D               GG+RD D  + 
Sbjct: 4   SHGCVSKILNRYQETGSIRPGVIGGSKPKEGVVDKASAPSVSSISRILRGGKRDDDPRKD 63

Query: 125 QSSQSLKGGDTTDNGEVTAK------------KMLFSDNQQSSLKRCYELKEEDFPPLST 268
            S   + GG  +D  ++ ++            +  F+  Q   L+R +E  +  +P + T
Sbjct: 64  HSIDGILGGGGSDESDIESEPGIPLKRKQRRSRTTFTAEQLEVLERSFE--KTQYPDVYT 121

Query: 269 SSQIGKSTTPLSAQKDSITE 328
             ++        AQK  +TE
Sbjct: 122 REEL--------AQKAKLTE 133


>tr|A8P077|A8P077_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13126 PE=4
           SV=1
          Length = 286

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
 Frame = +2

Query: 47  GPGFLGNSKKVLVYDGGRRDQDGWR--SQSSQSLKG-GDTTDNGEVTAKKMLFSDNQQSS 217
           G G  G  K       G+   + W   S  +++LK   D  ++   T     FSDN  +S
Sbjct: 84  GSGLKGKGK-------GKEKGNAWSPFSDEAEALKWFADLPEHQAATLFSGYFSDNIATS 136

Query: 218 LKRCYEL--KEEDFP----------PLSTSSQIG--KSTTPLSAQKDSITE-----WPHL 340
            +   E+  K  DFP          P +TSS+ G  K+  P++ Q D I +      P  
Sbjct: 137 GRPHREIFPKNSDFPLASDLKSARGPAATSSEAGASKAGAPVNEQMDGILKGLLDTMPES 196

Query: 341 --QACVTDSS--IWNSPNLQES 394
                V+D S  IWN PNL+++
Sbjct: 197 IRNEIVSDESQLIWNLPNLEDA 218


>tr|B4IDY1|B4IDY1_DROSE GM11265 OS=Drosophila sechellia GN=GM11265
           PE=4 SV=1
          Length = 2214

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 27/102 (26%), Positives = 46/102 (45%)
 Frame = +2

Query: 95  GRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSS 274
           G+R  D +  Q+ Q  + G     G  T  +       Q   +   + KEE+ PPL+T S
Sbjct: 504 GQRAADAFAVQADQGEQSGSGAIRGRGTGGQRSRRPAGQVHHRNRNQRKEEEPPPLATPS 563

Query: 275 QIGKSTTPLSAQKDSITEWPHLQACVTDSSIWNSPNLQESVD 400
              +S++  +AQ+    +    Q+    ++  N   LQESV+
Sbjct: 564 SKSRSSSRAAAQRQQQNQHQQSQSHQQTAAAGNMA-LQESVN 604


>tr|Q2NDZ8|Q2NDZ8_ERYLH Putative uncharacterized protein
           OS=Erythrobacter litoralis (strain HTCC2594)
           GN=ELI_15060 PE=4 SV=1
          Length = 2409

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2   NEGCLLTESLEFGSLGPGFLGNSKKVLVYDGGRRDQDGWRS-QSSQSLKGGDTTDNGEVT 178
           + G +L ES   GSL  G L     + +   G     G  S QS  +  GG TT +G+VT
Sbjct: 484 SSGSILAESSAGGSLSLGVLSAGTTITLNTTGSTAVGGVNSAQSLATDAGGTTTFSGDVT 543

Query: 179 AKKMLFSDNQQSS 217
              +  +DN  S+
Sbjct: 544 TGTLTINDNLTSA 556