BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913033|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F08.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P73053|THYX_SYNY3 Thymidylate synthase thyX OS=Synechocystis ...    31   3.0  

>sp|P73053|THYX_SYNY3 Thymidylate synthase thyX OS=Synechocystis sp.
           (strain PCC 6803) GN=thyX PE=3 SV=1
          Length = 215

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 38  YSKSRNLECFEIRREDSCGERNSLDHCVELSEIW 139
           YS +   EC+E RR+D    +NSLD   E ++ W
Sbjct: 92  YSCATEYECYEARRQDVKNRQNSLDDFDESTKKW 125

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913033|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F08.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6WZ13|B6WZ13_9ENTR Putative uncharacterized protein OS=Provi...    39   0.12 
tr|B6X9V7|B6X9V7_9ENTR Putative uncharacterized protein OS=Provi...    37   0.77 
tr|Q71046|Q71046_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   1.7  
tr|Q71044|Q71044_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   6.5  
tr|A7CE20|A7CE20_BURPI Thiamine-monophosphate kinase OS=Ralstoni...    33   6.5  
tr|B2Q6J8|B2Q6J8_PROST Putative uncharacterized protein OS=Provi...    33   8.5  

>tr|B6WZ13|B6WZ13_9ENTR Putative uncharacterized protein
           OS=Providencia rustigianii DSM 4541 GN=PROVRUST_00166
           PE=4 SV=1
          Length = 136

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -2

Query: 240 DNTCIDHQSIRQLSSPITIACWIMGALLFLRNVPHISESSTQWSRL-FLSPQESSLLISK 64
           D  CI+ + ++ + +PITI CW++G           +E   + S+  F+SP  S L+ S 
Sbjct: 66  DMVCINSEQLKLIPTPITIPCWVLG-----------NEIHPEGSKFTFISPVLSELIASS 114

Query: 63  HSKFLLFE 40
           H+K  L++
Sbjct: 115 HAKQALWK 122


>tr|B6X9V7|B6X9V7_9ENTR Putative uncharacterized protein
           OS=Providencia alcalifaciens DSM 30120
           GN=PROVALCAL_00103 PE=4 SV=1
          Length = 136

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = -2

Query: 243 IDNTCIDHQSIRQLSSPITIACWIMGALLFLRNVPHISESSTQWSRLFLSPQESSLLISK 64
           +D  CI+ Q ++ + +PITI CW++G  +      H   S       F+SP  S L+ S 
Sbjct: 65  VDIVCINSQQLKLIPTPITIPCWVIGDGI------HPEGSKV----TFISPVLSELIASS 114

Query: 63  HSKFLLFE 40
           ++K  L++
Sbjct: 115 NAKQALWK 122


>tr|Q71046|Q71046_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 358

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
 Frame = -1

Query: 481 NNRKHLAMACDL*ALHIETSCCCNLQFFQIYSHEVISR*HAQALGGACMPEGFSVSKHSM 302
           NNR H  ++CD     + T  C  + F  I  H              C P G ++ K + 
Sbjct: 73  NNRFHRLISCDT---SVITQACPKVSFEPIRIHY-------------CAPAGLAILKCNN 116

Query: 301 RT------CVNVCTSECIAPYIQQIN*QHMHRSSINKAAFLAHNNSMLDNGRSS 158
           +T      C NVCT +C       ++ Q +   S+++   +  + +  DN +++
Sbjct: 117 KTFNGTGPCTNVCTVQCTHGIRPVVSTQLLLIGSLSEEGVIIRSENFSDNAKTT 170


>tr|Q71044|Q71044_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 358

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
 Frame = -1

Query: 481 NNRKHLAMACDL*ALHIETSCCCNLQFFQIYSHEVISR*HAQALGGACMPEGFSVSKHSM 302
           NNR +  ++CD   +   T  C  + F  I  H              C P GF++ K + 
Sbjct: 73  NNRFYRLISCDTSDI---TQGCPKVSFEPIPIHY-------------CAPAGFAILKCNN 116

Query: 301 RT------CVNVCTSECIAPYIQQIN*QHMHRSSINKAAFLAHNNSMLDNGRS 161
           +T      C NVCT +C       ++ Q +   S+++   +  + +  DN ++
Sbjct: 117 KTFNGTGPCTNVCTVQCTHGIRPVVSTQLLLNGSLSEEGVIIRSENFSDNAKT 169


>tr|A7CE20|A7CE20_BURPI Thiamine-monophosphate kinase OS=Ralstonia
           pickettii 12D GN=Rpic12DDRAFT_3038 PE=4 SV=1
          Length = 361

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +2

Query: 98  RNSLDHCVELSEIWGTLRRKRRAPIIQHAIVMGEESCLID**SMHVLSI--DLLYIRGNT 271
           RNS DH  +LSE +G +RR    P  +  + +G++  L+     H L+I  D+L    + 
Sbjct: 34  RNSADHATDLSE-FGLIRRYFTRPTPRAILGVGDDCALLGPRPGHELAISTDMLVAGRHF 92

Query: 272 FRRAHIHACPHRMLA 316
           F  A   A  H+ LA
Sbjct: 93  FPHAEPRALGHKALA 107


>tr|B2Q6J8|B2Q6J8_PROST Putative uncharacterized protein
           OS=Providencia stuartii ATCC 25827 GN=PROSTU_04529 PE=4
           SV=1
          Length = 136

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 240 DNTCIDHQSIRQLSSPITIACWIMGALLFLRNVPHISESSTQWSRLFLSPQESSLLISKH 61
           D  CI+ + +  L +PITI CW++G                  +  F+SP    L  S  
Sbjct: 66  DVVCINSEQLAMLPTPITINCWVLGG----------QSHPEGLNTTFISPVLDELAASNS 115

Query: 60  SKFLLFE 40
           +K  L+E
Sbjct: 116 AKRALWE 122