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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913043
Clone id YMU001_000025_G07
Library
Length 456
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGAATTATACGAGAAGGCTGTCATCAATTCCAAGAAAGAGGTCGAATCTAGTGAGTTCA
GTTTGTCTGCGATGTCAATGGTTCCTGAGGCAGTTCATGTTGGTGCTGTGGCAGGTCTGG
GTTAGCTTCTAACAGTTACTGGGGATTTTGAAGAAGCTGAGCAGCACCTTACTCATGCTT
TGAAAGAGACAGAGAAGAATAAAGGGCATGTATAAAAGTGCTTTAGATTTGATGAAGACT
CCTCCCTTGAACAATGTGAAAGAACAAGGTTGGCGCCTAGCAGAGATTGTGGCTCTAACT
AGAGCTCGGTTAGGTGTGGCTCTAGCGCCAGCTCAATATCGGCGTAGCGAAGTCTAAAAA
CTAAGAGATTGGGTAGAGGCAACCTGGAAGAATTCGAGACCCCTACCGGAACTTGGATAT
TTAAATAGGCTTCTTGCTGGAGAAAGCAAAGATGAG
■■Homology search results ■■ -
sp_hit_id Q6FNY7
Definition sp|Q6FNY7|DPOE_CANGA DNA polymerase epsilon catalytic subunit A OS=Candida glabrata
Align length 58
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913043|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G07.
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FNY7|DPOE_CANGA DNA polymerase epsilon catalytic subunit A ...    30   3.8  

>sp|Q6FNY7|DPOE_CANGA DNA polymerase epsilon catalytic subunit A
            OS=Candida glabrata GN=POL2 PE=3 SV=1
          Length = 2217

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 188  LFQSMSKVLLSFFKIPSNC*KLTQTCHSTNMNCLRNH*HRRQTELTRFDLFLGIDDSL 15
            +F+S    L  F K PSN     +   ST +   +   H+R+  +T+F+ ++ + D++
Sbjct: 1498 IFRSWENKLSIFVKKPSN--NAQELLESTIIGIFKEQYHKRKDRITKFNKYINLSDNV 1553
tr_hit_id B8AZ32
Definition tr|B8AZ32|B8AZ32_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 69
Score (bit) 46.6
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913043|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G07.
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AZ32|B8AZ32_ORYSI Putative uncharacterized protein OS=Oryza...    47   1e-08
tr|Q65XG4|Q65XG4_ORYSJ Os05g0457700 protein OS=Oryza sativa subs...    48   2e-08
tr|A3B4R7|A3B4R7_ORYSJ Putative uncharacterized protein OS=Oryza...    48   2e-08
tr|A5BWH7|A5BWH7_VITVI Putative uncharacterized protein OS=Vitis...    43   1e-06
tr|A7PNQ9|A7PNQ9_VITVI Chromosome chr8 scaffold_23, whole genome...    43   1e-06
tr|A9SNQ4|A9SNQ4_PHYPA Predicted protein OS=Physcomitrella paten...    38   2e-06
tr|Q9LZL9|Q9LZL9_ARATH Putative uncharacterized protein T7H20_18...    54   5e-06
tr|Q8LFK4|Q8LFK4_ARATH Putative uncharacterized protein OS=Arabi...    54   5e-06
tr|A9P842|A9P842_POPTR Putative uncharacterized protein OS=Popul...    45   0.002
tr|B7ZZX8|B7ZZX8_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.003
tr|B4FQF7|B4FQF7_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.003
tr|B0TTK2|B0TTK2_SHEHH Putative uncharacterized protein OS=Shewa...    36   1.1  
tr|B8CT97|B8CT97_9GAMM SMC family protein, putative OS=Shewanell...    35   1.4  
tr|B1KEM8|B1KEM8_SHEWM Putative uncharacterized protein OS=Shewa...    34   3.2  
tr|A8H0F6|A8H0F6_SHEPA Putative uncharacterized protein OS=Shewa...    34   4.1  
tr|B4FD11|B4FD11_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|A7RYL8|A7RYL8_NEMVE Predicted protein OS=Nematostella vectens...    33   9.3  

>tr|B8AZ32|B8AZ32_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20207 PE=4 SV=1
          Length = 416

 Score = 46.6 bits (109), Expect(2) = 1e-08
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNV---KEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDW 372
           +G+Y+ AL++++ P +N+    K+  WR  +I++L R      L     R++E  ++++W
Sbjct: 324 EGLYRKALEVLRAPAINSEGVSKQMDWR--DIISLARGEYAELLLIQSNRKAEGERMKEW 381

Query: 373 VEATWKNSR 399
            E  W+NSR
Sbjct: 382 AEHAWRNSR 390



 Score = 35.4 bits (80), Expect(2) = 1e-08
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +3

Query: 3   ELYEKAVINSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTHAL 182
           ++YE+ +     E  S  F L+A +MVPE              + +G F EAE +LT AL
Sbjct: 225 QMYERVLEALTMEDMSGNF-LAACNMVPEEVSLGATCSYGQLLSHSGKFSEAEDYLTRAL 283

Query: 183 KETEKNKG 206
           K+ E   G
Sbjct: 284 KKAEDQFG 291


>tr|Q65XG4|Q65XG4_ORYSJ Os05g0457700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1362_D02.3 PE=4 SV=1
          Length = 416

 Score = 47.8 bits (112), Expect(2) = 2e-08
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNV---KEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDW 372
           +G+Y+ AL++++ P +N+    K+  WR  +I++L R      L     RR+E  ++++W
Sbjct: 324 EGLYRKALEVLRAPAINSEGVSKQMDWR--DIISLARGEYAELLLIQSNRRAEGERMKEW 381

Query: 373 VEATWKNSR 399
            E  W+NSR
Sbjct: 382 AEHAWRNSR 390



 Score = 33.9 bits (76), Expect(2) = 2e-08
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 3   ELYEKAVINSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTHAL 182
           ++YE+ +     E  S  F L+  +MVPE              + +G F EAE +LT AL
Sbjct: 225 QMYERVLEALTMEDMSGNF-LATCNMVPEEVSLGATCSYGQLLSHSGKFSEAEDYLTRAL 283

Query: 183 KETEKNKG 206
           K+ E   G
Sbjct: 284 KKAEDQFG 291


>tr|A3B4R7|A3B4R7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018039 PE=4 SV=1
          Length = 392

 Score = 47.8 bits (112), Expect(2) = 2e-08
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNV---KEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDW 372
           +G+Y+ AL++++ P +N+    K+  WR  +I++L R      L     RR+E  ++++W
Sbjct: 300 EGLYRKALEVLRAPAINSEGVSKQMDWR--DIISLARGEYAELLLIQSNRRAEGERMKEW 357

Query: 373 VEATWKNSR 399
            E  W+NSR
Sbjct: 358 AEHAWRNSR 366



 Score = 33.9 bits (76), Expect(2) = 2e-08
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 3   ELYEKAVINSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTHAL 182
           ++YE+ +     E  S  F L+  +MVPE              + +G F EAE +LT AL
Sbjct: 201 QMYERVLEALTMEDMSGNF-LATCNMVPEEVSLGATCSYGQLLSHSGKFSEAEDYLTRAL 259

Query: 183 KETEKNKG 206
           K+ E   G
Sbjct: 260 KKAEDQFG 267


>tr|A5BWH7|A5BWH7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003114 PE=4 SV=1
          Length = 595

 Score = 43.1 bits (100), Expect(2) = 1e-06
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQG-WRLAEIVALTRARLGVALAPAQYRRSEV*KLRDWVE 378
           +G+Y+ ALDL+K P L     +      +IVAL R      L   Q R+ E  +++ W +
Sbjct: 297 EGLYRRALDLLKAPSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQ 356

Query: 379 ATWKNSR 399
             W+N R
Sbjct: 357 TAWRNRR 363



 Score = 32.3 bits (72), Expect(2) = 1e-06
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 3   ELYEKAV--INSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTH 176
           ELY+KA+  I++ KE  +  ++L+A SM                    G+F EAE+ LT 
Sbjct: 196 ELYQKAIEGISANKEF-ADPYALAACSMSGREXQLAATCALGQLEGQLGNFSEAEEILTR 254

Query: 177 ALKETEKNKG 206
            L +TE++ G
Sbjct: 255 VLTKTEEHFG 264


>tr|A7PNQ9|A7PNQ9_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021355001
           PE=4 SV=1
          Length = 431

 Score = 43.1 bits (100), Expect(2) = 1e-06
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQG-WRLAEIVALTRARLGVALAPAQYRRSEV*KLRDWVE 378
           +G+Y+ ALDL+K P L     +      +IVAL R      L   Q R+ E  +++ W +
Sbjct: 338 EGLYRRALDLLKAPSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQ 397

Query: 379 ATWKNSR 399
             W+N R
Sbjct: 398 TAWRNRR 404



 Score = 32.3 bits (72), Expect(2) = 1e-06
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 3   ELYEKAV--INSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTH 176
           ELY+KA+  I++ KE  +  ++L+A SM                    G+F EAE+ LT 
Sbjct: 237 ELYQKAIEGISANKEF-ADPYALAACSMSGREVQLAATCDLGQLEGQLGNFSEAEEILTR 295

Query: 177 ALKETEKNKG 206
            L +TE++ G
Sbjct: 296 VLTKTEEHFG 305


>tr|A9SNQ4|A9SNQ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_81773 PE=4 SV=1
          Length = 624

 Score = 38.1 bits (87), Expect(2) = 2e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQGW--RLAEIVALTRARLGVALAPAQYRRSEV*KLRDWV 375
           +G+Y+   D +++P ++ V + G    L +++ L+RAR    +     R  E  K++ W 
Sbjct: 415 EGLYRRCQDYLRSPSID-VPDTGKIVDLVDVMCLSRARYAEIIHKFPNRDEEADKIQKWA 473

Query: 376 EATWKNSRPLPEL 414
              WK  RPL +L
Sbjct: 474 SKMWKGPRPLLDL 486



 Score = 36.6 bits (83), Expect(2) = 2e-06
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 3   ELYEK--AVINSKKEVESSEFSLSAMSMVPEXXXXXXXXXXXXXXTVTGDFEEAEQHLTH 176
           +LY +  +++ + KE  SS+ +L++ +M PE                 GDF+EAE  +T 
Sbjct: 313 DLYRRTISILQNSKE-SSSKVTLASCAMTPEEVQVGALAGLGQLACHVGDFDEAESKITE 371

Query: 177 ALKETEKNKG 206
           AL + EK  G
Sbjct: 372 ALTQAEKING 381


>tr|Q9LZL9|Q9LZL9_ARATH Putative uncharacterized protein T7H20_180
           OS=Arabidopsis thaliana GN=T7H20_180 PE=2 SV=1
          Length = 420

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 39/66 (59%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDWVEA 381
           +G+Y+ AL+LMK PPL++         E++AL RA     L   + R+SE  K++ W E+
Sbjct: 328 EGLYRKALELMKAPPLDSKGIINMENQEVIALARAGYAELLLIQENRKSEGEKMKSWAES 387

Query: 382 TWKNSR 399
            W+N R
Sbjct: 388 AWRNKR 393


>tr|Q8LFK4|Q8LFK4_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 420

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 39/66 (59%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDWVEA 381
           +G+Y+ AL+LMK PPL++         E++AL RA     L   + R+SE  K++ W E+
Sbjct: 328 EGLYRKALELMKAPPLDSKGIINMENQEVIALARAGYAELLLIQENRKSEGEKMKSWAES 387

Query: 382 TWKNSR 399
            W+N R
Sbjct: 388 AWRNKR 393


>tr|A9P842|A9P842_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 380

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNVKEQGWRLA-EIVALTRARLGVALAPAQYRRSEV*KLRDWVE 378
           +G+Y+ A++L+K PPL+    +  R   +I+AL R      L   + R+ E  K++ W E
Sbjct: 287 EGLYRRAIELLKAPPLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAE 346

Query: 379 ATWKN 393
           A W+N
Sbjct: 347 AAWRN 351


>tr|B7ZZX8|B7ZZX8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 417

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 202 KGMYKSALDLMKTPPLNNV---KEQGWRLAEIVALTRARLGVALAPAQYRRSEV*KLRDW 372
           +G+Y+ AL+++K P +N+    K+  WR  +I++L R      L     R++E  +++ W
Sbjct: 324 EGLYRKALEVLKAPAINSEGTSKQVDWR--DIISLARGEYAELLLIQSNRKAEGERMKQW 381

Query: 373 VEATWKNSR 399
            E  W+N R
Sbjct: 382 AEDAWRNRR 390