BP913046 |
Clone id |
YMU001_000025_G10 |
Library |
YMU01 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000025_G10. |
Accession |
BP913046 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATG GCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGGCCCCGCTGCTTCT CTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTA TCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCC TTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCT AAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATAGATACAGC CCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACT GGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTG TACAACACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAA TTCTGACACACTATGCGTCTTCCATGTCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
131 |
Score (bit) |
135.0 |
E-value |
1.0e-31 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913046|Adiantum capillus-veneris mRNA, clone: YMU001_000025_G10. (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 135 1e-31 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 134 3e-31 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 132 2e-30 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 130 4e-30 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 130 6e-30 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 124 3e-28 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 32 2.2 sp|P0C582|M2OM_NEUCR Putative mitochondrial 2-oxoglutarate/malat... 31 3.8 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 31 5.0 sp|P04710|ADT1_YEAST ADP,ATP carrier protein 1 OS=Saccharomyces ... 31 5.0 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 6.5
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 135 bits (340), Expect = 1e-31 Identities = 73/131 (55%), Positives = 86/131 (65%), Gaps = 2/131 (1%) Frame = +1
Query: 118 SLKSEFS--GVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASG 291 SLK F+ + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASG Sbjct: 10 SLKPTFTLEKISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASG 67
Query: 292 RKAKGKGVYQYTKKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXX 471 RK KGKGVYQY KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 68 RKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGA 127
Query: 472 XXVYNTSALAQ 504 VYNTSALAQ Sbjct: 128 LLVYNTSALAQ 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 134 bits (337), Expect = 3e-31 Identities = 73/131 (55%), Positives = 85/131 (64%), Gaps = 2/131 (1%) Frame = +1
Query: 118 SLKSEFS--GVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASG 291 SLK F+ V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASG Sbjct: 10 SLKPTFTLEKTSVKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASG 67
Query: 292 RKAKGKGVYQYTKKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXX 471 RK KGKGVYQY KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 68 RKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGA 127
Query: 472 XXVYNTSALAQ 504 VYNTSALAQ Sbjct: 128 LLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 132 bits (331), Expect = 2e-30 Identities = 67/119 (56%), Positives = 81/119 (68%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 328 KKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 504 KYGANVD YSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 130 bits (328), Expect = 4e-30 Identities = 73/133 (54%), Positives = 83/133 (62%), Gaps = 4/133 (3%) Frame = +1
Query: 118 SLKSEFSGVQ----VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDA 285 SLK GV V+G+PSLS S+ S + ASGVKKI PLG G K + +D+ Sbjct: 10 SLKPSSFGVDTKSAVKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDS 67
Query: 286 SGRKAKGKGVYQYTKKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXX 465 SGRK GKGVYQ+ KYGANVD YSPIY EEW+ +GD YA G TGL IWAVT Sbjct: 68 SGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAG 127
Query: 466 XXXXVYNTSALAQ 504 VYNTSALAQ Sbjct: 128 GALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 130 bits (326), Expect = 6e-30 Identities = 68/121 (56%), Positives = 79/121 (65%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 321 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 322 YTKKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 501 + KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 502 Q 504 Q Sbjct: 141 Q 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 125 bits (315), Expect = 1e-28 Identities = 67/118 (56%), Positives = 76/118 (64%) Frame = +1
Query: 151 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 330 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 331 KYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 504 KYGANVD YSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 124 bits (311), Expect = 3e-28 Identities = 68/126 (53%), Positives = 76/126 (60%) Frame = +1
Query: 124 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 303 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 304 GKGVYQYTKKYGANVDRYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 483 GKGVYQ+ KYGANVD YSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 484 NTSALA 501 +TSALA Sbjct: 132 STSALA 137
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 32.0 bits (71), Expect = 2.2 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 303 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 304 GKGVYQYTKKYGANVDRYSPIYVPEEW 384 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|P0C582|M2OM_NEUCR Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1 Length = 331
Score = 31.2 bits (69), Expect = 3.8 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1
Query: 214 VKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDRYSP 363 VK K GP G + G +D + AK +GV+++ + +G R +P Sbjct: 265 VKTRLQKQTRGPDGKLPYNGMVDCFAKVAKQEGVFRFYRGFGTYYVRIAP 314
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.8 bits (68), Expect = 5.0 Identities = 25/69 (36%), Positives = 36/69 (52%) Frame = +1
Query: 118 SLKSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRK 297 S S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K Sbjct: 34 SAHSQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSK 90
Query: 298 AKGKGVYQY 324 KGK V Y Sbjct: 91 FKGKPVVVY 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M9 |
Definition |
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
131 |
Score (bit) |
145.0 |
E-value |
2.0e-33 |
Report |
 |