NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913048
Clone id YMU001_000025_G12
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCCGCAGGAATTTTTTTTTTTTTTAGTGTGTCACCTTCTTCAGGTAACTCGTAAAATC
TAAGCATGCCTTGTTTAGAGTCTTATAAGATCCACAAAAATATTGTTCCACATTGTGTAA
GGGAAGCCCTTCTCCGAAGATCTTATGAATTGTTTCTTACCTTTTTCCCTTGTCTTTGTT
GCGCAAGAAGCATAAAGGGAAGTTAGCATTGTGTCCACAATATGTAGGTATGTCCTAATG
CGGGAGAACACATCTTCGTTTGTGGACTTCTTTGTGAGGTTGACCTTGTGAAGAATGAAA
AATAGGTTTTCCACAATGCCATGCTCTTTGAGGGCATCCTTTAAGAGTTGGAAAATAGCT
TGATAGGCTTTGGTGCTGATTCCAGCTTCATCACAAGCTTGTTGCACGTCATCATCACTA
ACCACATTTCTCAATT
■■Homology search results ■■ -
sp_hit_id Q2M2E3
Definition sp|Q2M2E3|ODFP4_HUMAN Outer dense fiber protein 4 OS=Homo sapiens
Align length 49
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913048|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G12.
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2M2E3|ODFP4_HUMAN Outer dense fiber protein 4 OS=Homo sapien...    33   0.34 
sp|Q06163|TERT_YEAST Telomerase reverse transcriptase OS=Sacchar...    32   0.77 
sp|Q6DDY6|SNX31_XENLA Sorting nexin-31 OS=Xenopus laevis GN=snx3...    32   0.77 
sp|A6T3X6|KUP_JANMA Probable potassium transport system protein ...    32   0.77 
sp|A4GA77|KUP_HERAR Probable potassium transport system protein ...    32   1.00 
sp|A2T7L7|ZSC21_PONPY Zinc finger and SCAN domain-containing pro...    32   1.3  
sp|A2T712|ZSC21_PANTR Zinc finger and SCAN domain-containing pro...    32   1.3  
sp|A1YG26|ZSC21_PANPA Zinc finger and SCAN domain-containing pro...    32   1.3  
sp|Q9Y5A6|ZSC21_HUMAN Zinc finger and SCAN domain-containing pro...    32   1.3  
sp|A1YEV9|ZSC21_GORGO Zinc finger and SCAN domain-containing pro...    32   1.3  
sp|Q07231|ZSC21_MOUSE Zinc finger and SCAN domain-containing pro...    31   1.7  
sp|Q14DN9|YE015_MOUSE Ankyrin repeat and death domain-containing...    30   2.9  
sp|Q28HD5|SNX31_XENTR Sorting nexin-31 OS=Xenopus tropicalis GN=...    30   2.9  
sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN dom...    30   5.0  
sp|A6NHY2|YE015_HUMAN Ankyrin repeat and death domain-containing...    30   5.0  
sp|A4J536|RUVA_DESRM Holliday junction ATP-dependent DNA helicas...    29   6.5  
sp|A7HNZ1|RS20_PARL1 30S ribosomal protein S20 OS=Parvibaculum l...    29   8.5  
sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis...    29   8.5  
sp|Q9FFN9|ARI13_ARATH Probable E3 ubiquitin-protein ligase ARI13...    29   8.5  

>sp|Q2M2E3|ODFP4_HUMAN Outer dense fiber protein 4 OS=Homo sapiens
           GN=ODF4 PE=1 SV=2
          Length = 257

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 228 DVFSRIRTYLHIVDTMLTSLYASCATKTREKGKKQFIRSSEKGFPYTMW 82
           DV +RI T  H++   L   Y S +    E GK  FI S+   FP  +W
Sbjct: 119 DVSNRIHTSAHVMSMGLLHFYKSRSCSDLENGKVTFIFSTLMLFPINIW 167


>sp|Q06163|TERT_YEAST Telomerase reverse transcriptase
           OS=Saccharomyces cerevisiae GN=EST2 PE=1 SV=1
          Length = 884

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
 Frame = +1

Query: 22  NS*NLSMPCLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSIKGS*HCVH--- 192
           NS  +++PCL     HK ++ HC+   L    Y   LTF   +     +  S  C     
Sbjct: 46  NSRKIALPCLPGDLSHKAVIDHCIIYLLTGELYNNVLTFGYKIARNEDVNNSLFCHSANV 105

Query: 193 NM*VCPNAGEHIF--VCGLLCEVDLVKNEK*VFHNAMLFEGIL 315
           N+ +   A   +F  + G    VDL+ N   +  N   F  I+
Sbjct: 106 NVTLLKGAAWKMFHSLVGTYAFVDLLINYTVIQFNGQFFTQIV 148


>sp|Q6DDY6|SNX31_XENLA Sorting nexin-31 OS=Xenopus laevis GN=snx31
           PE=2 SV=1
          Length = 431

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 196 YCGHNANFPLCFLRNKDKGKR*ETIHKIFGEGLPLHNVEQYFCGSYKTLNKACLDFTSYL 17
           Y  +   F L  +R KD     E IH++FG GLP    + Y   +    N+  L    YL
Sbjct: 22  YSVYLEGFLLFKVRYKDLHLWNEQIHRVFGNGLPKFPPKHYLAMTKNMANERRLQLEQYL 81

Query: 16  KKV 8
           +++
Sbjct: 82  QQI 84


>sp|A6T3X6|KUP_JANMA Probable potassium transport system protein kup
           OS=Janthinobacterium sp. (strain Marseille) GN=kup PE=3
           SV=1
          Length = 625

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 270 ILHKVNLTKKSTNEDVFSRIRTYLHIVDTMLTSLYASCATKTREKGKKQFIRSSEKGFPY 91
           IL  + LT K   E VF  ++ +   ++  L SL+ S    TR  G   F+R    G P+
Sbjct: 435 ILFTLMLTWKRGRELVFENLQKHAIPLEDFLASLFIS--PPTRVPGTAIFLRGESDGVPH 492

Query: 90  TMWNNI 73
            M +N+
Sbjct: 493 AMLHNL 498


>sp|A4GA77|KUP_HERAR Probable potassium transport system protein kup
           OS=Herminiimonas arsenicoxydans GN=kup PE=3 SV=2
          Length = 625

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 270 ILHKVNLTKKSTNEDVFSRIRTYLHIVDTMLTSLYASCATKTREKGKKQFIRSSEKGFPY 91
           +L  + LT K   E VF  ++ +   ++  L SL+ S    TR  G   F+R    G P+
Sbjct: 435 VLFTLMLTWKRGRELVFENLQKHAIPLEDFLASLFIS--PPTRVPGTAIFLRGESDGVPH 492

Query: 90  TMWNNI 73
            M +N+
Sbjct: 493 AMLHNL 498


>sp|A2T7L7|ZSC21_PONPY Zinc finger and SCAN domain-containing
           protein 21 OS=Pongo pygmaeus GN=ZSCAN21 PE=3 SV=1
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 361 SWNQHQSLSSYFPTLKG-CPQRAWHCGKPIFHSSQGQPHKEVHKRRCVLPH*DIPTYCGH 185
           S++QH  LSS+     G  P +   CGK   HSS    H  +H         + P +C H
Sbjct: 396 SFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTG-------EKPYWC-H 447

Query: 184 NANFPLCFLRNKDKGKR*ETIHKIFGEG 101
           +     C   N  K +R  T     GEG
Sbjct: 448 HCGKTFCSKSNLSKHQRVHT-----GEG 470


>sp|A2T712|ZSC21_PANTR Zinc finger and SCAN domain-containing
           protein 21 OS=Pan troglodytes GN=ZSCAN21 PE=3 SV=1
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 361 SWNQHQSLSSYFPTLKG-CPQRAWHCGKPIFHSSQGQPHKEVHKRRCVLPH*DIPTYCGH 185
           S++QH  LSS+     G  P +   CGK   HSS    H  +H         + P +C H
Sbjct: 396 SFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTG-------EKPYWC-H 447

Query: 184 NANFPLCFLRNKDKGKR*ETIHKIFGEG 101
           +     C   N  K +R  T     GEG
Sbjct: 448 HCGKTFCSKSNLSKHQRVHT-----GEG 470


>sp|A1YG26|ZSC21_PANPA Zinc finger and SCAN domain-containing
           protein 21 OS=Pan paniscus GN=ZSCAN21 PE=3 SV=1
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 361 SWNQHQSLSSYFPTLKG-CPQRAWHCGKPIFHSSQGQPHKEVHKRRCVLPH*DIPTYCGH 185
           S++QH  LSS+     G  P +   CGK   HSS    H  +H         + P +C H
Sbjct: 396 SFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTG-------EKPYWC-H 447

Query: 184 NANFPLCFLRNKDKGKR*ETIHKIFGEG 101
           +     C   N  K +R  T     GEG
Sbjct: 448 HCGKTFCSKSNLSKHQRVHT-----GEG 470


>sp|Q9Y5A6|ZSC21_HUMAN Zinc finger and SCAN domain-containing
           protein 21 OS=Homo sapiens GN=ZSCAN21 PE=2 SV=2
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 361 SWNQHQSLSSYFPTLKG-CPQRAWHCGKPIFHSSQGQPHKEVHKRRCVLPH*DIPTYCGH 185
           S++QH  LSS+     G  P +   CGK   HSS    H  +H         + P +C H
Sbjct: 396 SFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTG-------EKPYWC-H 447

Query: 184 NANFPLCFLRNKDKGKR*ETIHKIFGEG 101
           +     C   N  K +R  T     GEG
Sbjct: 448 HCGKTFCSKSNLSKHQRVHT-----GEG 470


>sp|A1YEV9|ZSC21_GORGO Zinc finger and SCAN domain-containing
           protein 21 OS=Gorilla gorilla gorilla GN=ZSCAN21 PE=3
           SV=1
          Length = 473

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 361 SWNQHQSLSSYFPTLKG-CPQRAWHCGKPIFHSSQGQPHKEVHKRRCVLPH*DIPTYCGH 185
           S++QH  LSS+     G  P +   CGK   HSS    H  +H         + P +C H
Sbjct: 396 SFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTG-------EKPYWC-H 447

Query: 184 NANFPLCFLRNKDKGKR*ETIHKIFGEG 101
           +     C   N  K +R  T     GEG
Sbjct: 448 HCGKTFCSKSNLSKHQRVHT-----GEG 470
tr_hit_id A0SPV6
Definition tr|A0SPV6|A0SPV6_9MAGN Maturase K OS=Manekia naranjoana
Align length 98
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913048|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G12.
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0SPV6|A0SPV6_9MAGN Maturase K OS=Manekia naranjoana GN=matK ...    35   2.5  
tr|A0SPV5|A0SPV5_9MAGN Maturase K OS=Manekia sydowii GN=matK PE=...    35   2.5  
tr|A2ER84|A2ER84_TRIVA Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q8Y739|Q8Y739_LISMO ComEB protein OS=Listeria monocytogenes G...    34   4.2  
tr|Q71ZI7|Q71ZI7_LISMF Zinc-binding, ComEB family protein OS=Lis...    34   4.2  
tr|Q8RT79|Q8RT79_LISMO Competence protein OS=Listeria monocytoge...    34   4.2  
tr|Q4ETZ1|Q4ETZ1_LISMO ComE operon protein 2 OS=Listeria monocyt...    34   4.2  
tr|Q4EEX0|Q4EEX0_LISMO ComE operon protein 2 OS=Listeria monocyt...    34   4.2  
tr|B8DE28|B8DE28_LISMO ComE operon protein 2 OS=Listeria monocyt...    34   4.2  
tr|Q92BN0|Q92BN0_LISIN ComEB protein OS=Listeria innocua GN=comE...    33   5.5  
tr|Q02WG8|Q02WG8_LACLS Oxidoreductase of aryl-alcohol dehydrogen...    33   5.5  
tr|A0AIT2|A0AIT2_LISW6 ComEB protein OS=Listeria welshimeri sero...    33   7.1  
tr|Q9ZB20|Q9ZB20_9LACT Putative uncharacterized protein OS=Lacto...    33   7.1  
tr|B1TXB6|B1TXB6_MICLU Squalene/phytoene synthase OS=Micrococcus...    33   7.1  
tr|A6NSI1|A6NSI1_9BACE Putative uncharacterized protein OS=Bacte...    33   7.1  
tr|A3U4I4|A3U4I4_9FLAO Putative uncharacterized protein OS=Croce...    33   7.1  
tr|Q4V7Q9|Q4V7Q9_XENLA LOC495122 protein (Fragment) OS=Xenopus l...    33   9.3  
tr|A8SLY3|A8SLY3_9FIRM Putative uncharacterized protein OS=Parvi...    33   9.3  

>tr|A0SPV6|A0SPV6_9MAGN Maturase K OS=Manekia naranjoana GN=matK
           PE=3 SV=1
          Length = 512

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
 Frame = -3

Query: 339 YQAIFQLLKDALKEHGIVENLFFILHKVNLTKKSTNEDVFSRIR---------------T 205
           Y++I  L  D      IV+ L   +HK NL   S NE+ F + R                
Sbjct: 45  YESIENLAYDNKSSSLIVKRLIIRMHKQNLFLISFNENDFQQNRLLGSKNYFDSKIISEA 104

Query: 204 YLHIVDTMLTSLYASCATKTREKGKKQFIRSSEKGFPY 91
           +  IV+   +   ASC  K RE  K   +RS    FP+
Sbjct: 105 FSVIVEIPFSFQLASCLEKKREIKKSHNLRSIHSVFPF 142


>tr|A0SPV5|A0SPV5_9MAGN Maturase K OS=Manekia sydowii GN=matK PE=3
           SV=1
          Length = 514

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
 Frame = -3

Query: 339 YQAIFQLLKDALKEHGIVENLFFILHKVNLTKKSTNEDVFSRIR---------------T 205
           Y++I  L  D      IV+ L   +HK NL   S NE+ F + R                
Sbjct: 45  YESIENLAYDNKSSSLIVKRLIIRMHKQNLFLISFNENDFQQNRLLGSKNYFDSKIISEA 104

Query: 204 YLHIVDTMLTSLYASCATKTREKGKKQFIRSSEKGFPY 91
           +  IV+   +   ASC  K RE  K   +RS    FP+
Sbjct: 105 FSVIVEIPFSFQLASCLEKKREIKKSHNLRSIHSVFPF 142


>tr|A2ER84|A2ER84_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_226500 PE=4 SV=1
          Length = 385

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = -3

Query: 351 STKAYQAIFQLLKDALKEHGIVENLFFILHKVNLTKKSTNEDVFSRIRTYLHIVDTMLTS 172
           ++K Y  +F L+ D L  H I+ N  +ILH      +ST+E   + +       DT    
Sbjct: 296 NSKGYN-MFNLVYDFLNSHSILFNKTYILHDSVYNPQSTDE--INPVTNSTFSGDTTFVK 352

Query: 171 LYASCATKTREKGKKQFIRSSEKGFP 94
            Y  C     EK  +Q I    K  P
Sbjct: 353 SYFGCRLNKTEKESEQIIDDYVKKHP 378


>tr|Q8Y739|Q8Y739_LISMO ComEB protein OS=Listeria monocytogenes
           GN=comEB PE=4 SV=1
          Length = 186

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 65  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 105


>tr|Q71ZI7|Q71ZI7_LISMF Zinc-binding, ComEB family protein
           OS=Listeria monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_1502 PE=4 SV=1
          Length = 186

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 65  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 105


>tr|Q8RT79|Q8RT79_LISMO Competence protein OS=Listeria monocytogenes
           PE=4 SV=1
          Length = 176

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 55  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 95


>tr|Q4ETZ1|Q4ETZ1_LISMO ComE operon protein 2 OS=Listeria
           monocytogenes str. 1/2a F6854 GN=comEB PE=4 SV=1
          Length = 186

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 65  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 105


>tr|Q4EEX0|Q4EEX0_LISMO ComE operon protein 2 OS=Listeria
           monocytogenes str. 4b H7858 GN=comEB PE=4 SV=1
          Length = 160

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 39  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 79


>tr|B8DE28|B8DE28_LISMO ComE operon protein 2 OS=Listeria
           monocytogenes HCC23 GN=LMHCC_1087 PE=4 SV=1
          Length = 160

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 39  CIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSI 79


>tr|Q92BN0|Q92BN0_LISIN ComEB protein OS=Listeria innocua GN=comEB
           PE=4 SV=1
          Length = 186

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  CLESYKIHKNIVPHCVREALLRRSYELFLTFFPCLCCARSI 168
           C+ +     N +  C +        EL++T FPCL C +SI
Sbjct: 65  CIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCLACTKSI 105