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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913053
Clone id YMU001_000025_H09
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTTTTGAAGTGAGGTTATATTCAAGATAAATAAATCCTCAAAGCGCACGTTTACAAC
ACGTTACATTTCAGTGTGCTCACTTTGATAGAACTAGTTATATGTATCTCAACAGGATCA
TGCTAATGCAGGAGACATGGTCTCTTGCATAGAAAAAAATGAGGGGAGATGCTCTCTACA
TGATTAAAGTATTTCCAAGTGCCCCCTAGCCCTAAGGGGGTTGTATGTTGAGTTTTTAAC
AAAACGAACCTGTAACTTAACTTGCTAAGCAATTTGTGAAATGGCAACCTTCTCAAGATT
TACAGCTCGATGTTTATATTGTGTGCCACGATGGGGGTGATCTCAGCCCTTGGTATTTCT
TCAATTATTCCCTTTCCATCGGACGGATCAAAAAAGAAAAAGTTCTTCAAAGGCTCGCCT
TT
■■Homology search results ■■ -
sp_hit_id Q10ZD0
Definition sp|Q10ZD0|PURA_TRIEI Adenylosuccinate synthetase OS=Trichodesmium erythraeum (strain IMS101)
Align length 62
Score (bit) 30.4
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913053|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_H09.
         (422 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10ZD0|PURA_TRIEI Adenylosuccinate synthetase OS=Trichodesmiu...    30   3.0  
sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS...    30   3.0  
sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-contain...    30   5.0  

>sp|Q10ZD0|PURA_TRIEI Adenylosuccinate synthetase OS=Trichodesmium
           erythraeum (strain IMS101) GN=purA PE=3 SV=1
          Length = 437

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 380 DGKGIIEEIPRAEITPIVAHNINIEL*ILRRLPFHKLLSKLSYRFVLLKTQHTTPLGLGG 201
           D K IIEE+ + E   I   N+ I       +P+H+++ K S +    K   TT  G+G 
Sbjct: 75  DPKVIIEELDQVEALGISTANLMISGAAHVTMPYHRMIDKASEKRRGSKKIGTTGRGIGP 134

Query: 200 TW 195
           T+
Sbjct: 135 TY 136


>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta
           OS=Dictyostelium discoideum GN=fntB PE=3 SV=1
          Length = 500

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 342 DHPHRGTQYKHRAVNLEKVAISQ 274
           DHPHRG  Y H    L  +++SQ
Sbjct: 362 DHPHRGKDYYHTCYGLSGISLSQ 384


>sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing
           protein 1 OS=Homo sapiens GN=SNED1 PE=1 SV=2
          Length = 1413

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 146 CIEKNEGRCSLHD*SISKCPLALRGLYVEF-LTKRTCNL 259
           C  +N GRC   + ++ +CPL   GL  EF +T   CN+
Sbjct: 472 CECRNGGRCLGANTTLCQCPLGFFGLLCEFEITAMPCNM 510
tr_hit_id B6TS17
Definition tr|B6TS17|B6TS17_MAIZE Ubiquitin-like 1-activating enzyme E1A OS=Zea mays
Align length 24
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913053|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_H09.
         (422 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TS17|B6TS17_MAIZE Ubiquitin-like 1-activating enzyme E1A OS...    45   0.001
tr|B4FTG1|B4FTG1_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.001
tr|A7PHI2|A7PHI2_VITVI Chromosome chr17 scaffold_16, whole genom...    45   0.002
tr|A5BME4|A5BME4_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q9LUF3|Q9LUF3_ARATH Ubiquitin activating enzyme OS=Arabidopsi...    44   0.003
tr|Q8LKN3|Q8LKN3_ARATH SUMO activating enzyme 1b OS=Arabidopsis ...    44   0.003
tr|Q8LCB9|Q8LCB9_ARATH Ubiquitin activating enzyme OS=Arabidopsi...    44   0.003
tr|Q0WNE6|Q0WNE6_ARATH Ubiquitin activating enzyme OS=Arabidopsi...    44   0.003
tr|O65078|O65078_PICMA Probable ubiquitin activating enzyme 2 (F...    44   0.004
tr|Q2R3X8|Q2R3X8_ORYSJ Os11g0497000 protein OS=Oryza sativa subs...    44   0.005
tr|B8BKM3|B8BKM3_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A3CBH1|A3CBH1_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|O82692|O82692_SOLLC Ubiquitin activating enzyme OS=Solanum ly...    43   0.009
tr|A9RTI6|A9RTI6_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|Q9SW32|Q9SW32_ARATH Ubiquitin activating enzyme-like protein ...    41   0.026
tr|Q8VY78|Q8VY78_ARATH Ubiquitin activating enzyme-like protein ...    41   0.026
tr|A1SY03|A1SY03_PSYIN Putative uncharacterized protein OS=Psych...    33   9.2  

>tr|B6TS17|B6TS17_MAIZE Ubiquitin-like 1-activating enzyme E1A
           OS=Zea mays PE=2 SV=1
          Length = 333

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 17/24 (70%), Positives = 23/24 (95%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEIP 351
           KG+P+KNFF+FD +DGKG+IE+IP
Sbjct: 304 KGDPVKNFFYFDVADGKGVIEDIP 327


>tr|B4FTG1|B4FTG1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 333

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 17/24 (70%), Positives = 23/24 (95%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEIP 351
           KG+P+KNFF+FD +DGKG+IE+IP
Sbjct: 304 KGDPVKNFFYFDVADGKGVIEDIP 327


>tr|A7PHI2|A7PHI2_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017952001
           PE=4 SV=1
          Length = 323

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KG+PLKNFFFFD  DGKGIIE+I
Sbjct: 294 KGDPLKNFFFFDAIDGKGIIEDI 316


>tr|A5BME4|A5BME4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022139 PE=4 SV=1
          Length = 288

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KG+PLKNFFFFD  DGKGIIE+I
Sbjct: 259 KGDPLKNFFFFDAIDGKGIIEDI 281


>tr|Q9LUF3|Q9LUF3_ARATH Ubiquitin activating enzyme OS=Arabidopsis
           thaliana GN=At5g50580 PE=2 SV=1
          Length = 320

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KGEPLKNFF+FD  DGKG+IE++
Sbjct: 294 KGEPLKNFFYFDAEDGKGVIEDL 316


>tr|Q8LKN3|Q8LKN3_ARATH SUMO activating enzyme 1b OS=Arabidopsis
           thaliana GN=SAE1b PE=2 SV=1
          Length = 320

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KGEPLKNFF+FD  DGKG+IE++
Sbjct: 294 KGEPLKNFFYFDAEDGKGVIEDL 316


>tr|Q8LCB9|Q8LCB9_ARATH Ubiquitin activating enzyme OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 318

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KGEPLKNFF+FD  DGKG+IE++
Sbjct: 292 KGEPLKNFFYFDAEDGKGVIEDL 314


>tr|Q0WNE6|Q0WNE6_ARATH Ubiquitin activating enzyme OS=Arabidopsis
           thaliana GN=At5g50680 PE=2 SV=1
          Length = 218

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KGEPLKNFF+FD  DGKG+IE++
Sbjct: 192 KGEPLKNFFYFDAEDGKGVIEDL 214


>tr|O65078|O65078_PICMA Probable ubiquitin activating enzyme 2
           (Fragment) OS=Picea mariana GN=Sb53 PE=2 SV=1
          Length = 241

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEI 354
           KG+P+KNFFFFD  DGKGIIE+I
Sbjct: 213 KGDPIKNFFFFDVMDGKGIIEDI 235


>tr|Q2R3X8|Q2R3X8_ORYSJ Os11g0497000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0497000 PE=2 SV=1
          Length = 328

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = -1

Query: 422 KGEPLKNFFFFDPSDGKGIIEEIP 351
           KG+P+KNFF++D +DGKGI E+IP
Sbjct: 300 KGDPIKNFFYYDAADGKGIAEDIP 323