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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913056
Clone id YMU001_000026_A02
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAGAGGAGAGAGGATTCTTGCGTATAGAGCTGAAGATGCTTTGAGAGTCATGCAATGTT
TGAGCAGACAGGCTGCGAGTGCTTATATGGAGGCTGAAGAGATTTTGTCCAGTCTGAGCA
CTGAACAAAGATTGTCACAATCAATGGCTGCTGTCCTAGATGAAGGGAAAGAGAACATTC
TATCAGCTGGGGATCATGGAAATGATTGGTTTTCAGTCTCTCCCGGATGCACACTGGTAG
ATATGTCATCGTGGAACATCCCATCTCAAATGACGCCAGCTCGCAGTGTTCATCAGAGAC
AAAGCTTTGAAAGTCCATCCATGTATTTGCTACGGGAGTATCGTTGATAGCATTGTCAAG
AAAATTTCTTGGTTTAACCCTCAACTACAAAGACCTTGTTGTCAGTGAACTTCTCTTTCA
CTCTCCCCAAGGTGATTACTATCTGTG
■■Homology search results ■■ -
sp_hit_id A1A4S6
Definition sp|A1A4S6|RHG10_HUMAN Rho GTPase-activating protein 10 OS=Homo sapiens
Align length 61
Score (bit) 30.8
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913056|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_A02.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1A4S6|RHG10_HUMAN Rho GTPase-activating protein 10 OS=Homo s...    31   2.7  
sp|Q0AFJ3|IF2_NITEC Translation initiation factor IF-2 OS=Nitros...    30   4.6  
sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus mus...    29   8.0  

>sp|A1A4S6|RHG10_HUMAN Rho GTPase-activating protein 10 OS=Homo
           sapiens GN=ARHGAP10 PE=1 SV=1
          Length = 786

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 105 LSSLSTEQRLSQSMAAVLDEGKENILSAGDHGNDWFSVSPGCTLVDMSSWNIPSQMTPAR 284
           L SLS+   ++ ++       K ++L+ G    DW S  PG T   M  W  P   T   
Sbjct: 638 LDSLSSPSPVTTAVPGPPGPDKNHLLADGGSFGDWASTIPGQTRSSMVQWLNPQSPTTTS 697

Query: 285 S 287
           S
Sbjct: 698 S 698


>sp|Q0AFJ3|IF2_NITEC Translation initiation factor IF-2
           OS=Nitrosomonas eutropha (strain C91) GN=infB PE=3 SV=1
          Length = 888

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +3

Query: 18  LAYRAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQRLSQSMAAVLDEGKENILSAGD- 194
           +A RAE+A +  + ++RQAA    + E+    ++ +  + +    V + G E    +G  
Sbjct: 138 IALRAEEARKRSELMARQAAELKEKQEKRRQQVTAQTEVKKESTQVQEPGSETAAVSGSV 197

Query: 195 -----HGNDWFSVSPGCTLVDMSSWNIPSQMTPA 281
                   +  +V+P  T+       + +Q TPA
Sbjct: 198 AATQPESTETAAVTPSATI------TVTTQTTPA 225


>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus
           musculus GN=Smarcc1 PE=1 SV=2
          Length = 1104

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 348 INDTPVANTWMDFQSFVSDEHCELASFEMGCSTMTYLPVCIRER 217
           I DT V N WM+ + +  DE+ +  SF    ST    PV   ER
Sbjct: 269 ILDTDVFNEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPER 312
tr_hit_id O65527
Definition tr|O65527|O65527_ARATH Putative uncharacterized protein F4D11.60 (Putative uncharacterized protein AT4g32740) OS=Arabidopsis thaliana
Align length 107
Score (bit) 40.8
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913056|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_A02.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O65527|O65527_ARATH Putative uncharacterized protein F4D11.60...    41   0.033
tr|Q7XJ57|Q7XJ57_ARATH At4g32740 OS=Arabidopsis thaliana PE=2 SV=1     40   0.044
tr|A7P5B2|A7P5B2_VITVI Chromosome chr4 scaffold_6, whole genome ...    34   3.1  
tr|Q948S5|Q948S5_TOBAC Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 ...    34   4.1  
tr|A0YZW7|A0YZW7_9CYAN L-sorbosone dehydrogenase OS=Lyngbya sp. ...    33   5.3  
tr|Q948S6|Q948S6_TOBAC Myb OS=Nicotiana tabacum GN=NtmybA1 PE=2 ...    33   5.3  
tr|B5WGT3|B5WGT3_9BURK NAD-dependent epimerase/dehydratase OS=Bu...    33   7.0  
tr|Q8X1C0|Q8X1C0_USTMA Dkh6 (Putative uncharacterized protein) O...    33   9.1  

>tr|O65527|O65527_ARATH Putative uncharacterized protein F4D11.60
           (Putative uncharacterized protein AT4g32740)
           OS=Arabidopsis thaliana GN=F4D11.60 PE=2 SV=1
          Length = 235

 Score = 40.8 bits (94), Expect = 0.033
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
 Frame = +3

Query: 27  RAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQRLSQSMAAVLDEGKENILSAGDHGND 206
           R+ DA+ +M+ LS  +A+AY +A E+L + + E  L +       +GKEN     D   +
Sbjct: 134 RSYDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKENQHQPHDQLGN 193

Query: 207 WFSVSPGCTLVDMSSWNIPSQ-MTPARSVHQRQSFESPSMYLLREYR 344
              V   C  +D S    P +   P+ S      + SPS YLL+  R
Sbjct: 194 RSQVE--CRALDFSDCGTPGKAKVPSAS---PGGYSSPSSYLLKSCR 235


>tr|Q7XJ57|Q7XJ57_ARATH At4g32740 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 216

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
 Frame = +3

Query: 27  RAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQRLSQSMAAVLDEGKENILSAGDHGND 206
           R+ DA+ +M+ LS  +A+AY +A E+L + + E  L +       +GKEN     D   +
Sbjct: 115 RSYDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKENQHQPHDQLGN 174

Query: 207 WFSVSPGCTLVDMSSWNIPSQ-MTPARSVHQRQSFESPSMYLLREYR 344
              V   C  +D S    P +   P+ S      + SPS YLL+  R
Sbjct: 175 RSQVE--CRALDFSDCGTPGKAKIPSAS---PGGYSSPSSYLLKSCR 216


>tr|A7P5B2|A7P5B2_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032464001
           PE=4 SV=1
          Length = 229

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 28/106 (26%), Positives = 43/106 (40%)
 Frame = +3

Query: 27  RAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQRLSQSMAAVLDEGKENILSAGDHGND 206
           R+ DA+ +M+ LS   A  + +A+E+L       R+  S     +    N     DH  +
Sbjct: 131 RSYDAIGLMKQLSEHTAETFADAKEVL-------RIGASEVMSKERCSSNNNHDPDHQLE 183

Query: 207 WFSVSPGCTLVDMSSWNIPSQMTPARSVHQRQSFESPSMYLLREYR 344
             S      ++D S    P + T          F SPS YLL+  R
Sbjct: 184 NHSHLASERVLDFSDCGTPGKETTKGKSSAAPGFSSPSSYLLKGCR 229


>tr|Q948S5|Q948S5_TOBAC Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 SV=1
          Length = 1042

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = +3

Query: 27   RAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQ--RLSQSMAAVLDEGKENILSAGDHG 200
            R+ DA+ +M+ LS Q A A+ +A+E+L   + E   R   S     DE   ++LSA    
Sbjct: 943  RSYDAIGLMKQLSEQTAGAFADAQEVLGGETPESILRGRNSKNQKADE-NHSLLSA---- 997

Query: 201  NDWFSVSPGCTLVDMSSWNIPSQMTPARS-VHQRQSFESPSMYLLREYR 344
                +V      +D S    P +     +      SF SPS YLL+  R
Sbjct: 998  ----NVMSERRTLDFSECGSPGKGKETENFCTSNNSFSSPSSYLLKGCR 1042


>tr|A0YZW7|A0YZW7_9CYAN L-sorbosone dehydrogenase OS=Lyngbya sp. PCC
           8106 GN=L8106_03849 PE=4 SV=1
          Length = 617

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 96  EEILSSLSTEQRLSQSMAAVLDEGKENILSAGDHGNDWFS 215
           +++  +L  +Q L  S    L  GK+N +  GD GNDW S
Sbjct: 85  DQLFGNLGDDQLLGNSGNDTLWGGKQNDILTGDEGNDWLS 124


>tr|Q948S6|Q948S6_TOBAC Myb OS=Nicotiana tabacum GN=NtmybA1 PE=2 SV=1
          Length = 1003

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +3

Query: 27   RAEDALRVMQCLSRQAASAYMEAEEILSSLSTEQRLSQSMAAVLDEGKENILSAGDHGND 206
            R+ DA+ +M+ LS Q A +  +A +IL S + E  LS+  +      +   L A +    
Sbjct: 904  RSYDAIGLMKQLSEQTAPSIADAHQILGSETPETNLSKRNSKKPKADENCTLLASN---- 959

Query: 207  WFSVSPGCTLVDMSSWNIPSQ-MTPARSVHQRQSFESPSMYLLREYR 344
              + S   TL D +   IP +     +      SF SPS YLL+  R
Sbjct: 960  --ATSERRTL-DFNECGIPGKGKETTKFGSNNNSFSSPSSYLLKYCR 1003


>tr|B5WGT3|B5WGT3_9BURK NAD-dependent epimerase/dehydratase
           OS=Burkholderia sp. H160 GN=BH160DRAFT_2284 PE=4 SV=1
          Length = 216

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 132 LSQSMAAVLDEGKENILSAGDHGNDWFSVSPGCTLVDMSSWNIPSQMTPARSVH 293
           + +++AAV   G   ++ AG  G+ WF  SPG T+++   W  P ++ P  + H
Sbjct: 91  IERAIAAVRKAGVARLVMAGGCGSLWF--SPGVTVLESGRW--PEKLVPIATSH 140


>tr|Q8X1C0|Q8X1C0_USTMA Dkh6 (Putative uncharacterized protein)
           OS=Ustilago maydis GN=dkh6 PE=4 SV=1
          Length = 532

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = +3

Query: 57  CLSRQAASAYMEAEEILS---SLSTEQRLSQSMAAVLDEGKENILSAGDHGNDWFSVSPG 227
           C SR+ A+AY++   ++     LS+      SMAA L  G  N +   DH     + S  
Sbjct: 258 CASRRVAAAYLDVHRLVCINLILSSIGAFCISMAAGL-YGVPNSVYLVDHACSLDATSAA 316

Query: 228 CTL--VDMSSWNIPSQMTPARSVHQRQSFESPS 320
           CT+  V  + W I    +  RS H  Q+  SPS
Sbjct: 317 CTMNHVQKTMWLI----SRGRSTHSDQAAGSPS 345