BP913065 |
Clone id |
YMU001_000026_B01 |
Library |
YMU01 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000026_B01. |
Accession |
BP913065 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL10Contig1 |
Sequence |
CGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGT TTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACACCTGCTCGCACTGGTGC TTCCATCTGGGGCGGAACGCTCCCCTACCGATGTTTTTTGACATCCCACAGCTTCGGCAG ACCGCTTAGTCCCGCTCATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACT CTTTCAAGGGTGGCTGCTTCTAGACAAACCTCCTGGCTGTCTTTGCACTCCTACCTCCTT TACCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTCCCCTCTCGACG GTGAAGCTTATCCCTCATCGTCTCACTGGTTGACCCTTTTCCTTCGTTCCTTTTACTTGA ACGTTACATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCAGCCCGCACCG GAACGGTGCTTTACCCCTAGATGGTCTAGTCAACTGCTGCGCCTCAACGCATTTCGGGGA GAACCAGCTAGCTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q80WV7 |
Definition |
sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus |
Align length |
120 |
Score (bit) |
32.7 |
E-value |
1.2 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6N1H4 |
Definition |
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica |
Align length |
109 |
Score (bit) |
124.0 |
E-value |
3.0e-27 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913065|Adiantum capillus-veneris mRNA, clone: YMU001_000026_B01. (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s... 124 3e-27 tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic... 115 2e-24 tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ... 99 2e-19 tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino... 87 6e-16 tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino... 87 6e-16 tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ... 61 3e-13 tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 77 8e-13 tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh... 70 1e-10 tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul... 51 1e-10 tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, who... 64 4e-09 tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 44 7e-07 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 56 1e-06 tr|A1XNB2|A1XNB2_VICSA Putative cysteine synthase Voas-tl5 OS=Vi... 49 1e-04 tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome... 44 0.006 tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm... 41 0.049 tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ... 40 0.085 tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who... 31 0.13 tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein OSJNBb01... 37 0.54 tr|A8LKH8|A8LKH8_DINSH H+transporting two-sector ATPase B/B' sub... 37 0.70 tr|B1N6J8|B1N6J8_9PROT Putative uncharacterized protein OS=uncul... 37 0.70 tr|B4DYX4|B4DYX4_HUMAN cDNA FLJ60980, highly similar to Cell div... 37 0.92 tr|Q9CVL4|Q9CVL4_MOUSE Putative uncharacterized protein (Fragmen... 36 1.2 tr|Q3TNY6|Q3TNY6_MOUSE Putative uncharacterized protein (Fragmen... 36 1.2 tr|B5GYY5|B5GYY5_STRCL Putative uncharacterized protein OS=Strep... 30 4.1 tr|B4VCZ3|B4VCZ3_9ACTO Putative uncharacterized protein OS=Strep... 30 4.1 tr|Q4Q6C1|Q4Q6C1_LEIMA Putative uncharacterized protein OS=Leish... 34 4.6 tr|B5GFB2|B5GFB2_9ACTO Predicted protein OS=Streptomyces sp. SPB... 30 5.4 tr|Q9L0P2|Q9L0P2_STRCO Putative uncharacterized protein SCO4249 ... 34 6.0 tr|Q81P01|Q81P01_BACAN Major facilitator family transporter OS=B... 34 6.0 tr|Q81BY8|Q81BY8_BACCR Proline/betaine transporter OS=Bacillus c... 34 6.0
>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica PE=4 SV=1 Length = 109
Score = 124 bits (311), Expect = 3e-27 Identities = 70/109 (64%), Positives = 75/109 (68%), Gaps = 2/109 (1%) Frame = -1
Query: 555 RASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RSSKRNEGKGSTSE 382 RASWFSPKCVEAQQLT K F G + + N+ Y + G S SE Sbjct: 6 RASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGVRSASE 60
Query: 381 TMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLSRSSHP*KSA 235 TM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGL RSSHP KSA Sbjct: 61 TMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109
>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 102
Score = 115 bits (287), Expect = 2e-24 Identities = 64/103 (62%), Positives = 71/103 (68%) Frame = -1
Query: 555 RASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY*M*RSSKRNEGKGSTSETM 376 RASWFSPKCVEAQQLT K F G E+ ++ +++ S SE M Sbjct: 6 RASWFSPKCVEAQQLTGHLGVKHCFGAGR------ESGTKSRQTLNTRYPWRVKSASEAM 59
Query: 375 RDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLSRSSHP 247 DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGL RSSHP Sbjct: 60 GDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102
>tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 (Fragment) OS=Phillyrea latifolia GN=ophh-69 PE=2 SV=1 Length = 166
Score = 99.0 bits (245), Expect = 2e-19 Identities = 49/65 (75%), Positives = 53/65 (81%) Frame = -3
Query: 196 SGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSS 17 +G + AVGC+ TSVGERSA +GS AS GRSGSENVGLSN NIGENPMPRKPKGSS Sbjct: 100 AGDVQGCRAVGCKNTSVGERSALEGSPRASSGGRSGSENVGLSNANIGENPMPRKPKGSS 159
Query: 16 ARFVH 2 ARFVH Sbjct: 160 ARFVH 164
Score = 92.4 bits (228), Expect = 1e-17 Identities = 46/57 (80%), Positives = 48/57 (84%) Frame = -3
Query: 172 AVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSSARFVH 2 AVGC+ TSVGERSA +GS S GRSGSENVGLSN NIGENPMPRKPKGSSA FVH Sbjct: 3 AVGCKNTSVGERSALEGSPRVSSGGRSGSENVGLSNANIGENPMPRKPKGSSAWFVH 59
>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1 Length = 139
Score = 87.0 bits (214), Expect = 6e-16 Identities = 55/112 (49%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Frame = +2
Query: 5 DEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLPYRCFLT---SHSF 175 D+P GTL + ILT+ VT A I S ST AS P R + S + Sbjct: 28 DDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPRTERSPTRQLASRVESIAS 87
Query: 176 GRPLSPAHLRRKSA*SVSYYALFQGWLLLDKPPGCLCTPTSFTTERSFRGLS 331 LSP H RR VSYYALF+GWLLL +PPGCLC TS TTERSFR LS Sbjct: 88 VDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139
>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1 Length = 133
Score = 87.0 bits (214), Expect = 6e-16 Identities = 55/112 (49%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Frame = +2
Query: 5 DEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLPYRCFLT---SHSF 175 D+P GTL + ILT+ VT A I S ST AS P R + S + Sbjct: 22 DDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPRTERSPTRQLASRVESIAS 81
Query: 176 GRPLSPAHLRRKSA*SVSYYALFQGWLLLDKPPGCLCTPTSFTTERSFRGLS 331 LSP H RR VSYYALF+GWLLL +PPGCLC TS TTERSFR LS Sbjct: 82 VDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133
>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum GN=orf106b PE=4 SV=1 Length = 106
Score = 60.8 bits (146), Expect(2) = 3e-13 Identities = 31/47 (65%), Positives = 35/47 (74%) Frame = +1
Query: 361 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 501 +KLIPHRLT P P +LVFRVCLDLVPLS+PAP+ CFTPR Sbjct: 1 MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45
Score = 37.4 bits (85), Expect(2) = 3e-13 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +2
Query: 509 VNCCASTHFGENQLA 553 VNCCASTHFGENQLA Sbjct: 48 VNCCASTHFGENQLA 62
>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 Length = 46
Score = 76.6 bits (187), Expect = 8e-13 Identities = 37/41 (90%), Positives = 37/41 (90%) Frame = -1
Query: 555 RASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 433 RASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY Sbjct: 6 RASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46
>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=BMULJ_05092 PE=4 SV=1 Length = 123
Score = 69.7 bits (169), Expect = 1e-10 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = +2
Query: 5 DEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLPYR-CFLTSHSFGR 181 DE C G L + T T I S +S+ S GTL Y C S + Sbjct: 22 DERCVGNLGLTARGPFTPFIATHVSIRTSDTSSTLYKAPSQAYGTLSYHACKHASAASVY 81
Query: 182 PLSPAHLRRKSA*SVSYYALFQGWLLLDKPPGCLCTPTSFTT 307 L+P HL R++ SVSYYA F+GWLLL +PP C PTSF T Sbjct: 82 GLAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123
>tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 59
Score = 51.2 bits (121), Expect(2) = 1e-10 Identities = 24/34 (70%), Positives = 28/34 (82%) Frame = -2
Query: 503 HLGVKHRSGAGCESGTKSRQTLNTRCNVQVKGTK 402 HLGVKH GAG ESGTKSRQTLNTR ++++ G K Sbjct: 23 HLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVK 56
Score = 38.1 bits (87), Expect(2) = 1e-10 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -1
Query: 555 RASWFSPKCVEAQQLT 508 RASWFSPKCVEAQQLT Sbjct: 6 RASWFSPKCVEAQQLT 21
>tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009678001 PE=4 SV=1 Length = 114
Score = 64.3 bits (155), Expect = 4e-09 Identities = 39/77 (50%), Positives = 45/77 (58%) Frame = -3
Query: 232 IAH*SSALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIG 53 I H ++ PK+ K + SVGERSA +GST ASR + N NIG Sbjct: 46 INHRGFSILPKLWDVKS-------KNASVGERSALEGSTRASRRVDEAEARI---NANIG 95
Query: 52 ENPMPRKPKGSSARFVH 2 ENPMPRKPKGSSARFVH Sbjct: 96 ENPMPRKPKGSSARFVH 112
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