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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913073
Clone id YMU001_000026_B12
Library
Length 252
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAAGTCTTGCAATTCATCCTTCCAAGGCATCTTCTAAATCATGTTGCATGCAGAATCCT
CTGGTATAAGAGGTCAAAATTGGAATAGAAGAGGTCAAACCTTTTCATTCTTCAAGATCG
GCCGTAACAATTGCTGGCCATATGGGACAAAATACACCAGCCATGGCACACACAACAGCA
ACATCCCTTGCGCCATTTGATAGGCGATGCTTGTTAACTCCCTATTTTGGTATATCGATA
AAAGTGCTGCCC
■■Homology search results ■■ -
sp_hit_id Q5TBA9
Definition sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens
Align length 49
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913073|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_B12.
         (252 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY...    30   2.8  
sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fasciculari...    29   6.3  
sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RB...    29   6.3  
sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4...    29   6.3  
sp|P20584|PPA1_ASPNG Phosphate-repressible acid phosphatase OS=A...    29   6.3  
sp|O67691|PURL_AQUAE Phosphoribosylformylglycinamidine synthase ...    29   6.3  
sp|Q88DB9|PSD_PSEPK Phosphatidylserine decarboxylase proenzyme O...    29   8.3  
sp|Q3KJ03|PSD_PSEPF Phosphatidylserine decarboxylase proenzyme O...    29   8.3  
sp|A5W9U4|PSD_PSEP1 Phosphatidylserine decarboxylase proenzyme O...    29   8.3  
sp|Q4KJ87|PSD_PSEF5 Phosphatidylserine decarboxylase proenzyme O...    29   8.3  

>sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1
            SV=1
          Length = 3013

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 103  FHSSRSAVTIAGHMGQNTPAMAHTTATSLAPFDRRCLLTPYFGISIKVL 249
            F  ++ ++   GH+  +TP +  TT      +D + + TP  G+ +K L
Sbjct: 923  FGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQL 971


>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis
           GN=RBM4 PE=2 SV=1
          Length = 364

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 QNTPAMAHTTATSLAPFDRRCLLT 219
           QNT   +H T+TSL P+DR  L T
Sbjct: 256 QNTAMASHLTSTSLDPYDRHLLPT 279


>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4
           PE=1 SV=1
          Length = 364

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 QNTPAMAHTTATSLAPFDRRCLLT 219
           QNT   +H T+TSL P+DR  L T
Sbjct: 256 QNTAMASHLTSTSLDPYDRHLLPT 279


>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4
           PE=2 SV=1
          Length = 362

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 QNTPAMAHTTATSLAPFDRRCLLT 219
           QNT   +H T+TSL P+DR  L T
Sbjct: 256 QNTAMASHLTSTSLDPYDRHLLPT 279


>sp|P20584|PPA1_ASPNG Phosphate-repressible acid phosphatase
           OS=Aspergillus niger GN=pacA PE=4 SV=1
          Length = 436

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 252 GQHFYRYTKIGS*QASPIKWRKGXXXXXCHGWCILSHMASNCYGRS 115
           G H +  T  G  Q   ++W K       HG  +LSH      GRS
Sbjct: 83  GMHIHYQTPFGLGQLPAVRWGKDPRNLKQHGAGLLSHFQDWSSGRS 128


>sp|O67691|PURL_AQUAE Phosphoribosylformylglycinamidine synthase II
           OS=Aquifex aeolicus GN=purL PE=3 SV=1
          Length = 745

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 244 LLSIYQNRELTSIAYQMAQGMLLLCVPWLVYFVPYGQQL 128
           LL  + N+EL + A+ ++ G LL+ +  +V+  PYG ++
Sbjct: 620 LLISFNNKELITCAHDVSVGGLLIALLEMVFRTPYGLEV 658


>sp|Q88DB9|PSD_PSEPK Phosphatidylserine decarboxylase proenzyme
          OS=Pseudomonas putida (strain KT2440) GN=psd PE=3 SV=1
          Length = 287

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +2

Query: 5  VLQFILPRHLLNHVA-----CRILWYKRS 76
          + Q++LP HLL+ +A     CR+ W+K +
Sbjct: 8  ISQYLLPHHLLSRLAGCIAECRVRWFKNA 36


>sp|Q3KJ03|PSD_PSEPF Phosphatidylserine decarboxylase proenzyme
          OS=Pseudomonas fluorescens (strain Pf0-1) GN=psd PE=3
          SV=1
          Length = 286

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +2

Query: 5  VLQFILPRHLLNHVA-----CRILWYKRS 76
          + Q++LP HLL+ +A     CR+ W+K +
Sbjct: 8  ISQYLLPHHLLSRLAGCIAECRVRWFKNA 36


>sp|A5W9U4|PSD_PSEP1 Phosphatidylserine decarboxylase proenzyme
          OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=psd
          PE=3 SV=1
          Length = 287

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +2

Query: 5  VLQFILPRHLLNHVA-----CRILWYKRS 76
          + Q++LP HLL+ +A     CR+ W+K +
Sbjct: 8  ISQYLLPHHLLSRLAGCIAECRVRWFKNA 36


>sp|Q4KJ87|PSD_PSEF5 Phosphatidylserine decarboxylase proenzyme
          OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
          GN=psd PE=3 SV=1
          Length = 288

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +2

Query: 5  VLQFILPRHLLNHVA-----CRILWYKRS 76
          + Q++LP HLL+ +A     CR+ W+K +
Sbjct: 8  ISQYLLPHHLLSRLAGCIAECRVRWFKNA 36
tr_hit_id A8IT18
Definition tr|A8IT18|A8IT18_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 31
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913073|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_B12.
         (252 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IT18|A8IT18_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   5.5  

>tr|A8IT18|A8IT18_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_145788 PE=4 SV=1
          Length = 1000

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 215 NKHRLSNGARDVAVVCAMAGVFCPIWPAIVT 123
           NK  L+ G R + VV A A VFC +WPA  T
Sbjct: 541 NKEVLARGKRALLVVDAAADVFCRLWPAYET 571