BP913085 |
Clone id |
YMU001_000026_C12 |
Library |
YMU01 |
Length |
373 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000026_C12. |
Accession |
BP913085 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL825Contig1 |
Sequence |
CCACAAGCAGCAATTTGTCCATTCTAAGGACAACACGCAAGGCATCAGGGTACTTTTCAA ACTTCATGTAGATCTTGTACGCTATATCCAAGACTTGCATATCATCCACCTCTGACATAT AGCTTGCCATGCCTGTCAGGTATGCACAAGTTCGCTTGTAATTTGCCTTCTCAATGTGAT CAGGGAGCAAGTCCAGGGTTTCCACCTCGGTAAGAAGGTCAACAGCTTCAGGTTCTGCAT TGTGCTTCACATGGAAAGGTACAATTTGTTTTACAAGCTCCATGAGATCATCTACAGGTT TATCTTCAATCTGACGAGTTTGAAACTCGACACCTATCTCTCCAGCAAGATTTCTTACAT ACTCATGTCCCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54BC6 |
Definition |
sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum |
Align length |
118 |
Score (bit) |
111.0 |
E-value |
1.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913085|Adiantum capillus-veneris mRNA, clone: YMU001_000026_C12. (373 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subun... 111 1e-24 sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=S... 100 2e-21 sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit... 91 2e-18 sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subun... 90 3e-18 sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subun... 90 3e-18 sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subun... 90 4e-18 sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subun... 89 5e-18 sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=... 84 2e-16 sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 OS=C... 73 4e-13 sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=S... 65 1e-10 sp|P38742|RMD11_YEAST Protein RMD11 OS=Saccharomyces cerevisiae ... 33 0.34 sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe ... 31 1.7 sp|Q71YS6|ADEC_LISMF Adenine deaminase OS=Listeria monocytogenes... 30 2.8 sp|A0AJJ5|ADEC_LISW6 Adenine deaminase OS=Listeria welshimeri se... 30 3.7 sp|Q8Y6E5|ADEC_LISMO Adenine deaminase OS=Listeria monocytogenes... 30 3.7 sp|Q92AR6|ADEC_LISIN Adenine deaminase OS=Listeria innocua GN=ad... 30 3.7 sp|Q9IAY2|VMH5_AGKAC Zinc metalloproteinase H5 (Fragment) OS=Agk... 29 8.3
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1 Length = 893
Score = 111 bits (277), Expect = 1e-24 Identities = 51/118 (43%), Positives = 79/118 (66%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPVDDLMELVKQIVPFHVKHNAEPEAXXXXXXXXXX 194 WGHEYV++LA EIGVE+ ++ E++ V+DL++LV +IVPF + HNAEPEA Sbjct: 165 WGHEYVKHLATEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQL 224
Query: 193 XXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRM 20 + +I++ NY R C YL + Y+ DD+ +L + +IY+K ++YPDALRV +++ Sbjct: 225 SKIFQYIDENNYSRVCLYLFKCSYYVPGPDDINILKVCVEIYIKMKQYPDALRVAMKI 282
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2 Length = 891
Score = 100 bits (249), Expect = 2e-21 Identities = 51/124 (41%), Positives = 71/124 (57%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPVDDLMELVKQIVPFHVKHNAEPEAXXXXXXXXXX 194 WGHEYVR+LA EI EF +RQ E+ P DDLMEL IVPF + HNAE +A Sbjct: 157 WGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAI 216
Query: 193 XXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMDK 14 + +E N R C Y+T + + +D+ +L A+ IY KF++ AL V +R+D Sbjct: 217 EKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQLTQALNVAIRLDD 276
Query: 13 LLLV 2 + L+ Sbjct: 277 MSLI 280
>sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1 Length = 908
Score = 90.5 bits (223), Expect = 2e-18 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPV-DDLMELVKQIVPFHVKHNAEPEAXXXXXXXXX 197 WGHEYVR+LAGE+ E+Q +K + L+ LVK+IVP+++ HNAE EA Sbjct: 154 WGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQ 213
Query: 196 XXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMD 17 L I++ Y + C YLT +Y+ E ++ +L A ++ KF ++P+ALR+ L ++ Sbjct: 214 VDMLEKDIDENAYSKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLN 273
Query: 16 KLLLV 2 + LV Sbjct: 274 DMELV 278
>sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1 Length = 908
Score = 90.1 bits (222), Expect = 3e-18 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPV-DDLMELVKQIVPFHVKHNAEPEAXXXXXXXXX 197 WGHEYVR+LAGE+ E+Q +K + L+ LVK+IVP+++ HNAE EA Sbjct: 154 WGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQ 213
Query: 196 XXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMD 17 L I++ Y + C YLT +Y+ E ++ +L A ++ KF ++P+ALR+ L ++ Sbjct: 214 VDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLN 273
Query: 16 KLLLV 2 + LV Sbjct: 274 DMELV 278
>sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2 Length = 908
Score = 90.1 bits (222), Expect = 3e-18 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPV-DDLMELVKQIVPFHVKHNAEPEAXXXXXXXXX 197 WGHEYVR+LAGE+ E+Q +K + L+ LVK+IVP+++ HNAE EA Sbjct: 154 WGHEYVRHLAGEVAKEWQELDDAEKTQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQ 213
Query: 196 XXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMD 17 L I++ Y + C YLT +Y+ E ++ +L A ++ KF ++P+ALR+ L ++ Sbjct: 214 VDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLN 273
Query: 16 KLLLV 2 + LV Sbjct: 274 DMELV 278
>sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3 Length = 908
Score = 89.7 bits (221), Expect = 4e-18 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPV-DDLMELVKQIVPFHVKHNAEPEAXXXXXXXXX 197 WGHEYVR+LAGE+ E+Q +K + L+ LVK+IVP+++ HNAE EA Sbjct: 154 WGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQ 213
Query: 196 XXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMD 17 L I++ Y + C YLT +Y+ E ++ +L A ++ KF ++P+ALR+ L ++ Sbjct: 214 VDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLN 273
Query: 16 KLLLV 2 + LV Sbjct: 274 DMELV 278
>sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1 Length = 908
Score = 89.4 bits (220), Expect = 5e-18 Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPV-DDLMELVKQIVPFHVKHNAEPEAXXXXXXXXX 197 WGHEYVR+LAGE+ E+Q +K + L+ LVK+I+P+++ HNAE EA Sbjct: 154 WGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEACDLLMEIEQ 213
Query: 196 XXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMD 17 L I++ Y + C YLT +Y+ E ++ +L A ++ KF ++P+ALR+ L ++ Sbjct: 214 VDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLN 273
Query: 16 KLLLV 2 + LV Sbjct: 274 DMELV 278
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2 Length = 902
Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/124 (33%), Positives = 69/124 (55%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPVDDLMELVKQIVPFHVKHNAEPEAXXXXXXXXXX 194 WGHEYVR+LA EIG + R D+P +L++L +VP +K NAE +A Sbjct: 159 WGHEYVRHLALEIGEVYAKRIANDEPTQELVDLALVLVPLFLKSNAEADAVDLMSELEII 218
Query: 193 XXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAYKIYMKFEKYPDALRVVLRMDK 14 LP +++ Y R C Y+ M + ++ D+ L +A+ IY K+ ++ A+ + +R++ Sbjct: 219 EELPKFLDENTYSRVCLYMVSMVNLLTYPDNETFLRVAHSIYKKYNQHTQAMVLAIRLND 278
Query: 13 LLLV 2 L L+ Sbjct: 279 LGLI 282
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1 Length = 983
Score = 73.2 bits (178), Expect = 4e-13 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 21/139 (15%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPVDD---------------------LMELVKQIVP 257 WGHEYVR+LA EIG E Q+E + D+ +++L +IVP Sbjct: 149 WGHEYVRHLALEIG-EVYNEQVEKEAEDNSTSTESSPQPPHMNFEFSKDVILQLSLEIVP 207
Query: 256 FHVKHNAEPEAXXXXXXXXXXXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDIAY 77 + +KHN E +A LP +++ YKR C Y+ + +D+ L AY Sbjct: 208 YFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQYMIACVQLLPPPEDISFLQTAY 267
Query: 76 KIYMKFEKYPDALRVVLRM 20 IY+ + P+AL + +R+ Sbjct: 268 SIYLSELQLPEALSLAIRL 286
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3 Length = 993
Score = 64.7 bits (156), Expect = 1e-10 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 23/141 (16%) Frame = -1
Query: 373 WGHEYVRNLAGEIGVEFQTRQIEDKPVD-----------------------DLMELVKQI 263 WGHEY+R+LA EIG E Q+E D D + L I Sbjct: 149 WGHEYIRHLALEIG-EVYNDQVEKDAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDI 207
Query: 262 VPFHVKHNAEPEAXXXXXXXXXXXXLPDHIEKANYKRTCAYLTGMASYMSEVDDMQVLDI 83 VP+ +KHN E +A LP +++ ++R C Y+ + +D+ L Sbjct: 208 VPYFLKHNGEEDAVDLLLEIESIDKLPQFVDENTFQRVCQYMVACVPLLPPPEDVAFLKT 267
Query: 82 AYKIYMKFEKYPDALRVVLRM 20 AY IY+ + DA+ + +R+ Sbjct: 268 AYSIYLSQNELTDAIALAVRL 288
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U198 |
Definition |
tr|A9U198|A9U198_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
118 |
Score (bit) |
169.0 |
E-value |
6.0e-41 |
Report |
|