BP913086
Clone id YMU001_000026_D01
Library
Length 594
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGTTTAAAGGTCACTTCTCTGGTTGCTTGCCTTGCACCATCTCAGTGTGATGTGGACAAC
TGCATGCTCATCTAGCAACCAGCAGGGAGAAGTGCCACCTCTCAAAGACATGTAAGCAAG
AGGAATGCTAAAGGTGAACATGAAATCACTATCACCAACATATGAAGCCACTGCTCTAGC
ATGTGTCAAAACCATCTTTTCCACTTGAATACATTGCTGTCACTACCTCATATGTCAAAA
GCAACACCTAATATGCCCTGTGTGACCACAATGCCAACGATGCAAGTATCGGCATGAAAA
AGACCTTTGTCTCTCAAGAGTCATATCTACAGACTCTGAAACGTCACACATATCTAGTAT
ATGGATATCAAGAGACCAAAACTATGGCGAGAAATCTTGGGAGAAATTTGACAAAGTCTC
CCTTGTAAATTGACCGAAATCTCAATCAAAATAGCAACCATAAATCATCCTAGAATATCA
ATCATAAACCATGCCAAAATGGCAACAAATTGGAAGATCACTCAATCACTACACAATCAT
AACCATGATCAATGCATCAATCCGATGCTTGCATATGCAAAGTGTAGCTCTATG
■■Homology search results ■■ -
sp_hit_id Q9ZJV0
Definition sp|Q9ZJV0|TRPA_HELPJ Tryptophan synthase alpha chain OS=Helicobacter pylori J99
Align length 41
Score (bit) 31.2
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913086|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D01.
(594 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZJV0|TRPA_HELPJ Tryptophan synthase alpha chain OS=Helicoba... 31 4.1
sp|P55998|RF1_HELPY Peptide chain release factor 1 OS=Helicobact... 31 5.4
sp|Q9ZMZ0|RF1_HELPJ Peptide chain release factor 1 OS=Helicobact... 31 5.4
sp|Q1CV77|RF1_HELPH Peptide chain release factor 1 OS=Helicobact... 31 5.4
sp|Q17VT1|RF1_HELAH Peptide chain release factor 1 OS=Helicobact... 31 5.4
sp|Q8BZ52|FSD2_MOUSE Fibronectin type III and SPRY domain-contai... 30 7.0

>sp|Q9ZJV0|TRPA_HELPJ Tryptophan synthase alpha chain
OS=Helicobacter pylori J99 GN=trpA PE=3 SV=1
Length = 262

Score = 31.2 bits (69), Expect = 4.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1

Query: 457 TINHPRISIINHAKMATNWKITQSLHNHNHDQCINPMLAYA 579
TI + + HA MA N+++ + + +NHD I +LAYA
Sbjct: 62 TIQASHLRALKHASMAKNFQLLKKIRGYNHDIPIG-LLAYA 101


>sp|P55998|RF1_HELPY Peptide chain release factor 1 OS=Helicobacter
pylori GN=prfA PE=3 SV=1
Length = 352

Score = 30.8 bits (68), Expect = 5.4
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 442 SIKIATINHPRISIINHAKMATNWKITQSLHNHNHDQCINPMLAYAK 582
S +I T N+P+ + H T + + + + + N D+ INP++A+A+
Sbjct: 302 SERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQ 348


>sp|Q9ZMZ0|RF1_HELPJ Peptide chain release factor 1 OS=Helicobacter
pylori J99 GN=prfA PE=3 SV=1
Length = 352

Score = 30.8 bits (68), Expect = 5.4
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 442 SIKIATINHPRISIINHAKMATNWKITQSLHNHNHDQCINPMLAYAK 582
S +I T N+P+ + H T + + + + + N D+ INP++A+A+
Sbjct: 302 SERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQ 348


>sp|Q1CV77|RF1_HELPH Peptide chain release factor 1 OS=Helicobacter
pylori (strain HPAG1) GN=prfA PE=3 SV=1
Length = 352

Score = 30.8 bits (68), Expect = 5.4
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 442 SIKIATINHPRISIINHAKMATNWKITQSLHNHNHDQCINPMLAYAK 582
S +I T N+P+ + H T + + + + + N D+ INP++A+A+
Sbjct: 302 SERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQ 348


>sp|Q17VT1|RF1_HELAH Peptide chain release factor 1 OS=Helicobacter
acinonychis (strain Sheeba) GN=prfA PE=3 SV=1
Length = 352

Score = 30.8 bits (68), Expect = 5.4
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 442 SIKIATINHPRISIINHAKMATNWKITQSLHNHNHDQCINPMLAYAK 582
S +I T N+P+ + H T + + + + + N D+ INP++A+A+
Sbjct: 302 SERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQ 348


>sp|Q8BZ52|FSD2_MOUSE Fibronectin type III and SPRY
domain-containing protein 2 OS=Mus musculus GN=Fsd2 PE=2
SV=1
Length = 692

Score = 30.4 bits (67), Expect = 7.0
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2

Query: 239 KQHLICPV*PQCQRCKYRHEKDLCL--SRVISTDSETSHISSIWISRDQNYGEK 394
K+H + P+ + K K++C ++I ++ SH+ ++I+ ++N+G +
Sbjct: 141 KEHEVTPISKALEHAKDEVHKNMCKLEQQIIEMENFASHLEEVFITVEENFGRQ 194


tr_hit_id A0E2M9
Definition tr|A0E2M9|A0E2M9_PARTE Chromosome undetermined scaffold_75, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 67
Score (bit) 37.4
E-value 0.65
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913086|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D01.
(594 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0E2M9|A0E2M9_PARTE Chromosome undetermined scaffold_75, whol... 37 0.65
tr|A8PU36|A8PU36_BRUMA Vacuolar assembly protein VPS41 homolog, ... 35 2.5
tr|B4MWR8|B4MWR8_DROWI GK14603 OS=Drosophila willistoni GN=GK146... 35 3.3

>tr|A0E2M9|A0E2M9_PARTE Chromosome undetermined scaffold_75, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00022718001 PE=4 SV=1
Length = 506

Score = 37.4 bits (85), Expect = 0.65
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2

Query: 350 ISSIWISRDQNYGEKSWEKFDKVSLVN*P--KSQSK*QP*IILEYQS*TM-PKWQQIGRS 520
IS + RD++ ++ W + K++L + P + K IIL+YQS M KW QI +
Sbjct: 129 ISKMICRRDKDQCKQKWSQMQKIALQSQPFQPEEDKILYEIILKYQSVDMGQKWSQIAQE 188

Query: 521 LNHYTII 541
LN ++II
Sbjct: 189 LNQHSII 195


>tr|A8PU36|A8PU36_BRUMA Vacuolar assembly protein VPS41 homolog,
putative OS=Brugia malayi GN=Bm1_34430 PE=4 SV=1
Length = 650

Score = 35.4 bits (80), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1

Query: 357 LDMCDVSESVDMTLERQRSFSCRYLHR----WHCGHTGHIRCCF 238
L+ C + + + LER++S CR+ + + CGH+ HIRC +
Sbjct: 581 LEQCCIVCRIAVLLEREKSTDCRHANCDIIVYDCGHSAHIRCIY 624


>tr|B4MWR8|B4MWR8_DROWI GK14603 OS=Drosophila willistoni GN=GK14603
PE=4 SV=1
Length = 409

Score = 35.0 bits (79), Expect = 3.3
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1

Query: 393 FSP*FWSLDIHILDMCDVSESVDMTLERQRSFSCRYLHRWHCGHTGHIRCCF 238
+ P FW H + M D+ +VD L+R R+FS +L GH+ C F
Sbjct: 133 YQPQFWDFSFHEVGMYDLPAAVDYILQRSRNFSQVHL----VGHSQGTTCIF 180