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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913087
Clone id YMU001_000026_D02
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCTATCTCAGCAATGCAAACCCTCTGTGCAGCATCAACTTCTACTGCAACTGCCTGTTC
AGCTAGAGACATTATTCGAGTAACCTCTTCGTCAGCTTTGATAGCAATTTCTCTTGCCAC
CTTTGCAGCTTCTGCCAATTTCATAACCTCCTTCTGCAACTCCGACTTCGAGTCTGCGAA
GCGCATAAGCTCAGTTGCATATTGAGTTACTGCAAGCCTAAAAGCCTTTAACTCTGCCTC
AGCAGCATCTAGTTCTTCTTCTTCCTTTGACAATGTAGAAGCTTCATTTTCTGACTCTCC
ACTTACATCACCAGCAGCACCAATACTTTCCAAAGCCTCGAGCTCTGCAGAAGAATCTCG
TGAAACAAACGCTGATGCACCCTCGACAACATTTTCTAGCTCCGCTTGGG
■■Homology search results ■■ -
sp_hit_id Q6PGG2
Definition sp|Q6PGG2|GMIP_MOUSE GEM-interacting protein OS=Mus musculus
Align length 37
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913087|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D02.
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PGG2|GMIP_MOUSE GEM-interacting protein OS=Mus musculus GN=...    30   2.9  
sp|A0AIB5|RRF_LISW6 Ribosome-recycling factor OS=Listeria welshi...    29   6.5  
sp|Q8Y7G7|RRF_LISMO Ribosome-recycling factor OS=Listeria monocy...    29   6.5  
sp|Q720A8|RRF_LISMF Ribosome-recycling factor OS=Listeria monocy...    29   6.5  

>sp|Q6PGG2|GMIP_MOUSE GEM-interacting protein OS=Mus musculus
           GN=Gmip PE=1 SV=1
          Length = 971

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = -3

Query: 213 AVTQYATELMRFADSKS----ELQKEVMKLAEAAKVA 115
           A ++YA EL+ + D ++    E  K +MKLAEA KV+
Sbjct: 107 AWSRYAKELLAWTDKRANYELEFAKSIMKLAEAGKVS 143


>sp|A0AIB5|RRF_LISW6 Ribosome-recycling factor OS=Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 /
           SLCC5334) GN=frr PE=3 SV=1
          Length = 185

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 219 RLAVTQYATELMRFADSKSELQKEVMKLAEAAKVA-REIAIKADEEVTRI 73
           RL++ Q   E       + EL KEV K AE AKVA R I  +A+EE+ ++
Sbjct: 99  RLSIPQLTEE------RRKELVKEVKKEAEEAKVAVRNIRREANEELKKL 142


>sp|Q8Y7G7|RRF_LISMO Ribosome-recycling factor OS=Listeria
           monocytogenes GN=frr PE=3 SV=1
          Length = 185

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 219 RLAVTQYATELMRFADSKSELQKEVMKLAEAAKVA-REIAIKADEEVTRI 73
           RL++ Q   E       + EL KEV K AE AKVA R I  +A+EE+ ++
Sbjct: 99  RLSIPQLTEE------RRKELVKEVKKEAEEAKVAVRNIRREANEELKKL 142


>sp|Q720A8|RRF_LISMF Ribosome-recycling factor OS=Listeria
           monocytogenes serotype 4b (strain F2365) GN=frr PE=3
           SV=1
          Length = 185

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 219 RLAVTQYATELMRFADSKSELQKEVMKLAEAAKVA-REIAIKADEEVTRI 73
           RL++ Q   E       + EL KEV K AE AKVA R I  +A+EE+ ++
Sbjct: 99  RLSIPQLTEE------RRKELVKEVKKEAEEAKVAVRNIRREANEELKKL 142
tr_hit_id A7PZ88
Definition tr|A7PZ88|A7PZ88_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera
Align length 43
Score (bit) 39.3
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913087|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D02.
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PZ88|A7PZ88_VITVI Chromosome chr15 scaffold_40, whole genom...    39   0.100
tr|Q9LQ77|Q9LQ77_ARATH T1N6.20 protein OS=Arabidopsis thaliana G...    39   0.17 
tr|Q7XPW1|Q7XPW1_ORYSJ Os04g0682800 protein OS=Oryza sativa subs...    38   0.29 
tr|Q259F9|Q259F9_ORYSA H0124B04.17 protein OS=Oryza sativa GN=H0...    38   0.29 
tr|B8ARS2|B8ARS2_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A3AYR9|A3AYR9_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|O65273|O65273_ARATH F6N23.14 protein (Putative uncharacterize...    37   0.38 
tr|A9RVH0|A9RVH0_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.38 

>tr|A7PZ88|A7PZ88_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026787001
           PE=4 SV=1
          Length = 499

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = -3

Query: 192 ELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
           EL R    K ELQKEV KL E A+  +  A+KA+EEV  IM L
Sbjct: 206 ELKRLQCRKEELQKEVDKLNEKAEKTQMDALKAEEEVANIMLL 248


>tr|Q9LQ77|Q9LQ77_ARATH T1N6.20 protein OS=Arabidopsis thaliana
           GN=T1N6.20 PE=4 SV=1
          Length = 526

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -3

Query: 342 LEALESIGAAGDVSGESENEASTLSXXXXXXXXXXXXXXAFRLAVT--QYATELMRFADS 169
           +E+LE+ GA  D+   SE    T+                    V      ++L      
Sbjct: 229 VESLEA-GAGNDIPHVSEETEETIDVNDKEEALLAAKDDIKECQVNLDNCESQLSALLSK 287

Query: 168 KSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
           K ELQKEV KL E A+  +  ++KA+E+VT IM L
Sbjct: 288 KDELQKEVDKLNEFAETIQISSLKAEEDVTNIMKL 322


>tr|Q7XPW1|Q7XPW1_ORYSJ Os04g0682800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0032F06.20 PE=2 SV=2
          Length = 1154

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = -3

Query: 192 ELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
           EL R  + K ELQKEV +L E A+ A   A KA+E+V  IM L
Sbjct: 250 ELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVL 292


>tr|Q259F9|Q259F9_ORYSA H0124B04.17 protein OS=Oryza sativa
            GN=H0124B04.17 PE=3 SV=1
          Length = 2505

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = -3

Query: 192  ELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
            EL R  + K ELQKEV +L E A+ A   A KA+E+V  IM L
Sbjct: 1576 ELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVL 1618


>tr|B8ARS2|B8ARS2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_17972 PE=4 SV=1
          Length = 2246

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = -3

Query: 192  ELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
            EL R  + K ELQKEV +L E A+ A   A KA+E+V  IM L
Sbjct: 1342 ELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVL 1384


>tr|A3AYR9|A3AYR9_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_015941 PE=3 SV=1
          Length = 2351

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = -3

Query: 192  ELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
            EL R  + K ELQKEV +L E A+ A   A KA+E+V  IM L
Sbjct: 1426 ELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVL 1468


>tr|O65273|O65273_ARATH F6N23.14 protein (Putative uncharacterized
           protein AT4g00640) OS=Arabidopsis thaliana GN=AT4g00640
           PE=2 SV=1
          Length = 425

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -3

Query: 183 RFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMSL 64
           R    K ELQKEV +L EAA+ A+  A+KA+E+V  IM L
Sbjct: 239 RLQVKKDELQKEVDRLNEAAERAQISALKAEEDVANIMVL 278


>tr|A9RVH0|A9RVH0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_120036 PE=4 SV=1
          Length = 1043

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -3

Query: 213 AVTQYATELMRFADSKSELQKEVMKLAEAAKVAREIAIKADEEVTRIMS 67
           A+ +   EL +    K ELQKE ++ +E ++VA + A+ ADE+V   M+
Sbjct: 130 ALAECEAELAQIQTVKMELQKEALRRSELSQVAEDAAVLADEDVASAMT 178