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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913089
Clone id YMU001_000026_D04
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCGGCTCCTCGGGAATGGAGCTGTCCCCCTTTATAAGTGCCAATTCTTCAGTCAACTCA
TGTCTGCTAGCACTATTTTGCCTGGACTGTTCACCAGTATGTTCTTGAGTGTTTATGTCC
CCTTTTCTGCTGATAAACCCTTTTGTTCCAGAGCTCAGATCTTCATCGCTGTCAGGATGA
TAATTGGCTTGTCTGTTAACTTCCGCTTTCTTTCGCTTCCCACCCGGTATTTCCTCCTGA
GAACACTTCCTTTTTCTGCATTTTCGGCTCTTATCCACCACCCCTTTACTACCAGCAGCT
CTTTTAGTTAAGTTCAGTTGTGAATGAGACTGTGTATAAGGAGCTTCTTCTGTGGAAAGT
AGCGGGCACCTAAAATTTTCATGATTTATCCAAGAAGTCTGACTGTTTGATATCAGTGGA
ACCCTGTCCTTGTAATCTTTGAGAACCTTTTCTCCATATAAAATAGGACTTGAATTGTGT
GCAAGATCCTCATTGCTATTTCTGGCCAATAACGTGCCATTCTGAGGTTCACATTGATTC
CCTGTCTTTTTATCTGCGAGGCTTCCAGTTTCAGCAGATTTGGAACTACGTAGAGCT
■■Homology search results ■■ -
sp_hit_id Q02H45
Definition sp|Q02H45|Y5713_PSEAB UPF0234 protein PA14_57130 OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
Align length 73
Score (bit) 34.7
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913089|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D04.
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02H45|Y5713_PSEAB UPF0234 protein PA14_57130 OS=Pseudomonas ...    35   0.37 
sp|A6VB67|Y4966_PSEA7 UPF0234 protein PSPA7_4966 OS=Pseudomonas ...    35   0.37 
sp|Q9HW11|Y4395_PSEAE UPF0234 protein PA4395 OS=Pseudomonas aeru...    33   0.83 
sp|Q54XL6|FRAY1_DICDI Serine/threonine-protein kinase fray1 OS=D...    31   4.1  
sp|Q9Y4P8|WIPI2_HUMAN WD repeat domain phosphoinositide-interact...    30   7.1  
sp|Q3ZYV1|DNAK_DEHSC Chaperone protein dnaK OS=Dehalococcoides s...    30   7.1  
sp|Q6AY57|WIPI2_RAT WD repeat domain phosphoinositide-interactin...    30   9.2  
sp|Q80W47|WIPI2_MOUSE WD repeat domain phosphoinositide-interact...    30   9.2  
sp|Q3Z6P1|DNAK_DEHE1 Chaperone protein dnaK OS=Dehalococcoides e...    30   9.2  

>sp|Q02H45|Y5713_PSEAB UPF0234 protein PA14_57130 OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=PA14_57130 PE=3 SV=1
          Length = 159

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 QEEIPGGKRKKAEVNRQANYHPDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQNSASRH 60
           ++  P GK  K EVN    +    D+DL+    G I  +         GEQ R     R 
Sbjct: 79  KDAYPSGKVVKQEVN----FREGIDKDLAKKIVGLIKERKLKVQAAIQGEQVRVTGKKRD 134

Query: 59  ELTEELALIKGDS 21
           +L E +AL++G+S
Sbjct: 135 DLQEAIALLRGES 147


>sp|A6VB67|Y4966_PSEA7 UPF0234 protein PSPA7_4966 OS=Pseudomonas
           aeruginosa (strain PA7) GN=PSPA7_4966 PE=3 SV=1
          Length = 159

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 QEEIPGGKRKKAEVNRQANYHPDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQNSASRH 60
           ++  P GK  K EVN    +    D+DL+    G I  +         GEQ R     R 
Sbjct: 79  KDAYPSGKVVKQEVN----FREGIDKDLAKKIVGLIKERKLKVQAAIQGEQVRVTGKKRD 134

Query: 59  ELTEELALIKGDS 21
           +L E +AL++G+S
Sbjct: 135 DLQEAIALLRGES 147


>sp|Q9HW11|Y4395_PSEAE UPF0234 protein PA4395 OS=Pseudomonas
           aeruginosa GN=PA4395 PE=3 SV=1
          Length = 159

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 QEEIPGGKRKKAEVNRQANYHPDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQNSASRH 60
           ++  P GK  K +VN    +    D+DL+    G I  +         GEQ R     R 
Sbjct: 79  KDAYPSGKVVKQDVN----FREGIDKDLAKKIVGLIKERKLKVQAAIQGEQVRVTGKKRD 134

Query: 59  ELTEELALIKGDS 21
           +L E +AL++G+S
Sbjct: 135 DLQEAIALLRGES 147


>sp|Q54XL6|FRAY1_DICDI Serine/threonine-protein kinase fray1
           OS=Dictyostelium discoideum GN=fray1 PE=3 SV=1
          Length = 574

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
 Frame = -2

Query: 206 AEVNR--QANYH--PDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQ--------NSASR 63
           A+ NR   AN+H  PDSD D SS  +  ++  G  N +E  GE+ +         ++  R
Sbjct: 15  AQHNRIEHANHHDLPDSDSDSSSREEELMNSSGGGNGKEPIGEKKKLPSHISEVISNERR 74

Query: 62  HELTEELALIKGDSSIPEE 6
             +  EL  IK  S  P +
Sbjct: 75  ESIIRELQQIKTISDYPSQ 93


>sp|Q9Y4P8|WIPI2_HUMAN WD repeat domain phosphoinositide-interacting
           protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1
          Length = 454

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 45  FFSQLMSASTILPGLFTSMF------LSVYVPFSADKPFCSRAQIFIAVRMIIGLSVNFR 206
           F   LM++++ LP   T MF       +V +PF   K  CS A I    R+++G +  + 
Sbjct: 295 FGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYL 354

Query: 207 FL 212
           ++
Sbjct: 355 YM 356


>sp|Q3ZYV1|DNAK_DEHSC Chaperone protein dnaK OS=Dehalococcoides sp.
           (strain CBDB1) GN=dnaK PE=2 SV=1
          Length = 636

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = -2

Query: 590 RSSKSAETGSLADKKTGNQCEPQNGTLLARNSNEDLAHNSSPILYGEKVLKDYKDRVPLI 411
           + ++ AE  ++ D K   + E       ARN  ++LA+N+      EK L+D KD++P  
Sbjct: 514 KMTREAEAHAVEDTKRKEEIE-------ARNVADNLAYNA------EKTLRDNKDKIPAE 560

Query: 410 SNSQ 399
            N++
Sbjct: 561 LNTE 564


>sp|Q6AY57|WIPI2_RAT WD repeat domain phosphoinositide-interacting
           protein 2 OS=Rattus norvegicus GN=Wipi2 PE=2 SV=1
          Length = 445

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +3

Query: 45  FFSQLMSASTILPGLFTSMF------LSVYVPFSADKPFCSRAQIFIAVRMIIGLSVNFR 206
           F   LM++++ LP   T MF       +V +PF   K  CS   I    R+++G S  + 
Sbjct: 277 FGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYL 336

Query: 207 FL 212
           ++
Sbjct: 337 YM 338


>sp|Q80W47|WIPI2_MOUSE WD repeat domain phosphoinositide-interacting
           protein 2 OS=Mus musculus GN=Wipi2 PE=1 SV=1
          Length = 445

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +3

Query: 45  FFSQLMSASTILPGLFTSMF------LSVYVPFSADKPFCSRAQIFIAVRMIIGLSVNFR 206
           F   LM++++ LP   T MF       +V +PF   K  CS   I    R+++G S  + 
Sbjct: 277 FGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYL 336

Query: 207 FL 212
           ++
Sbjct: 337 YM 338


>sp|Q3Z6P1|DNAK_DEHE1 Chaperone protein dnaK OS=Dehalococcoides
           ethenogenes (strain 195) GN=dnaK PE=2 SV=1
          Length = 637

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 590 RSSKSAETGSLADKKTGNQCEPQNGTLLARNSNEDLAHNSSPILYGEKVLKDYKDRVPLI 411
           + ++ AE  +  D K   + E       ARN  ++LA+N+      EK L+D KD++P  
Sbjct: 514 KMTREAEAHAAEDSKRKEEIE-------ARNVADNLAYNA------EKTLRDNKDKIPAE 560

Query: 410 SNSQ 399
            N++
Sbjct: 561 LNTE 564
tr_hit_id Q5CF38
Definition tr|Q5CF38|Q5CF38_CRYHO Serine/threonine-protein kinase 2 OS=Cryptosporidium hominis
Align length 89
Score (bit) 37.7
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913089|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D04.
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CF38|Q5CF38_CRYHO Serine/threonine-protein kinase 2 OS=Cryp...    38   0.50 
tr|Q5CXM0|Q5CXM0_CRYPV Ser/Thr protein kinase OS=Cryptosporidium...    37   0.86 
tr|Q45724|Q45724_BACTU Tn1000-like transposase (Fragment) OS=Bac...    35   3.3  
tr|Q45703|Q45703_BACTM Transposase OS=Bacillus thuringiensis sub...    35   3.3  
tr|Q3F159|Q3F159_BACTI Transposase OS=Bacillus thuringiensis ser...    35   3.3  
tr|Q7Q2N5|Q7Q2N5_ANOGA AGAP004733-PA OS=Anopheles gambiae GN=AGA...    35   3.3  
tr|Q0TZN6|Q0TZN6_PHANO Putative uncharacterized protein OS=Phaeo...    35   3.3  
tr|Q73ID5|Q73ID5_WOLPM Putative uncharacterized protein OS=Wolba...    34   7.3  
tr|A8ERK3|A8ERK3_ARCB4 NADH-quinone oxidoreductase, N subunit OS...    34   7.3  
tr|Q4D6B6|Q4D6B6_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.3  
tr|B7UZH3|B7UZH3_PSEAE Putative uncharacterized protein OS=Pseud...    33   9.5  
tr|A3LLA4|A3LLA4_PSEAE Putative uncharacterized protein OS=Pseud...    33   9.5  
tr|A3L4K3|A3L4K3_PSEAE Putative uncharacterized protein OS=Pseud...    33   9.5  
tr|B6NEG7|B6NEG7_BRAFL Putative uncharacterized protein OS=Branc...    33   9.5  
tr|A2DDW4|A2DDW4_TRIVA Putative uncharacterized protein OS=Trich...    33   9.5  

>tr|Q5CF38|Q5CF38_CRYHO Serine/threonine-protein kinase 2
           OS=Cryptosporidium hominis GN=Chro.60070 PE=4 SV=1
          Length = 524

 Score = 37.7 bits (86), Expect = 0.50
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
 Frame = -2

Query: 524 QNGTLLARNSNEDLAHNSSPILYGEKVLKD----YKDRVPLISN--SQTSWINHENFRCP 363
           Q+ +LL R  N+D  HN + I Y   V +D     + ++P+I N  + +S +NH N    
Sbjct: 404 QSVSLLERIGNKDYHHNFNSIYYATTVNEDNFSSLEGQIPVIGNMITSSSCLNHSNNNSS 463

Query: 362 LLSTEEAPYTQSHSQLNLTKRAAGSKGVV 276
            ++  ++  + ++   + T R++  K V+
Sbjct: 464 SINNSQSKSSNNNKSSHKTNRSSSIKAVL 492


>tr|Q5CXM0|Q5CXM0_CRYPV Ser/Thr protein kinase OS=Cryptosporidium
            parvum Iowa II GN=cgd6_520 PE=4 SV=1
          Length = 1103

 Score = 37.0 bits (84), Expect = 0.86
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
 Frame = -2

Query: 524  QNGTLLARNSNEDLAHNSSPILYGEKVLKD----YKDRVPLISN--SQTSWINHENFRCP 363
            Q+ +LL R  N+D  HN + I Y   V +D     + ++P+I N  + +S +NH N    
Sbjct: 980  QSVSLLERIGNKDHHHNFNSIYYATTVNEDNFSSLEGQIPVIGNMITSSSCLNHSNNNSS 1039

Query: 362  LLSTEEAPYTQSHSQLNLTKRAAGSKGVV 276
             ++  ++  + ++   + T R++  K V+
Sbjct: 1040 SINNNQSKSSNNNKSSHKTNRSSSIKAVL 1068


>tr|Q45724|Q45724_BACTU Tn1000-like transposase (Fragment)
           OS=Bacillus thuringiensis PE=4 SV=1
          Length = 534

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 431 KDRVPLISNSQTSWINHENFRCPLLSTEEAPYTQSHSQLNLTKRAAGSK 285
           +D VP +   + +WI    FR   LS   A     HSQL L K   G +
Sbjct: 166 QDGVPSLERDRLTWIEQNYFRAETLSESNAKLVDFHSQLQLAKMWGGGE 214


>tr|Q45703|Q45703_BACTM Transposase OS=Bacillus thuringiensis subsp.
           morrisoni GN=tnpA PE=4 SV=1
          Length = 1005

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 431 KDRVPLISNSQTSWINHENFRCPLLSTEEAPYTQSHSQLNLTKRAAGSK 285
           +D VP +   + +WI    FR   LS   A     HSQL L K   G +
Sbjct: 637 QDGVPSLERDRLTWIEQNYFRAETLSESNAKLVDFHSQLQLAKMWGGGE 685


>tr|Q3F159|Q3F159_BACTI Transposase OS=Bacillus thuringiensis
           serovar israelensis ATCC 35646 GN=RBTH_07771 PE=4 SV=1
          Length = 1005

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 431 KDRVPLISNSQTSWINHENFRCPLLSTEEAPYTQSHSQLNLTKRAAGSK 285
           +D VP +   + +WI    FR   LS   A     HSQL L K   G +
Sbjct: 637 QDGVPSLERDRLTWIEQNYFRAETLSESNAKLVDFHSQLQLAKMWGGGE 685


>tr|Q7Q2N5|Q7Q2N5_ANOGA AGAP004733-PA OS=Anopheles gambiae
           GN=AGAP004733 PE=4 SV=4
          Length = 648

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = -2

Query: 569 TGSLADKKTGNQCEPQNGTLLARNSNEDLAHNSSPILYGEKVLKDYKDRVPLISNSQTSW 390
           +GSL ++   N+C PQ G    + S +D  ++S+  +  +    D   R   + N     
Sbjct: 304 SGSLDNENLANKCNPQTGFTKRQKSQQDTVNDSTNSVIIDIASCDGPVRFRRVLNVMYG- 362

Query: 389 INHENFRCPLLSTEEAPYTQSHSQLNLTKRAAGS 288
            N  N       TE+APY  + ++ N+ KR+  S
Sbjct: 363 CNTNNHNTDCADTEDAPYL-AETETNVKKRSIRS 395


>tr|Q0TZN6|Q0TZN6_PHANO Putative uncharacterized protein
            OS=Phaeosphaeria nodorum GN=SNOG_15042 PE=4 SV=1
          Length = 1199

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 221  GKRKKAEVNRQANYHPDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQNSA---SRHELT 51
            G+ +K   +RQA+  PDS  + ++GT G + R      + ++ + S Q +     +HELT
Sbjct: 890  GEGQKPRQSRQASPEPDSSANSTTGTDGDVDRASTRRLRSYSVDNSTQRNIHLDRQHELT 949

Query: 50   EEL 42
            E +
Sbjct: 950  ERM 952


>tr|Q73ID5|Q73ID5_WOLPM Putative uncharacterized protein
           OS=Wolbachia pipientis wMel GN=WD_0233 PE=4 SV=1
          Length = 523

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 3/162 (1%)
 Frame = -2

Query: 551 KKTGNQCEPQNGTLLARNSNEDLAHNSSPILYGEKVLKDYKDRVPLISNSQTSWINHENF 372
           K T N C P NG LL  + N      S P+ +G   L    +     + S+ S  + E  
Sbjct: 211 KYTENVCNPTNGGLLGESDNPQ-TFESDPLQHGSNGLGYNFNGYSQATYSKLSASDQEEG 269

Query: 371 RCPLLSTEEAPYTQSHSQLNLTKRAAGSKGVVDXXXXXXXXXXSQEEIPGGKRKKAEVNR 192
           +   L           ++ NLTK A GS    +                 G++K +E  +
Sbjct: 270 QGYSLG------GSCENKENLTKGAGGSNQTFE-----------------GEQKSSEFPK 306

Query: 191 QANYHPDSD---EDLSSGTKGFISRKGDINTQEHTGEQSRQN 75
             N+  DSD   ED S   KG     G++++ E T +   +N
Sbjct: 307 VDNW-SDSDGNSEDSSDSKKGSYYSSGNLDSMELTDDLDSEN 347


>tr|A8ERK3|A8ERK3_ARCB4 NADH-quinone oxidoreductase, N subunit
           OS=Arcobacter butzleri (strain RM4018) GN=nuoN PE=3 SV=1
          Length = 506

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 48  FSQLMSASTILPGLFTSMFLSVYVPFSADKPFCSRAQIFIAVRMIIGLS-VNFRFLSLPT 224
           F  L+   TIL G    MF+S+Y  F+  K     + +F+ + ++  LS V+  F   P 
Sbjct: 4   FLYLVPTLTILVGALVLMFMSMYDKFNI-KNHIFASSVFLIIALLFALSNVSNSFSVQPY 62

Query: 225 RYFLLRTLPFSAFS 266
             FL   L F +FS
Sbjct: 63  ESFLNNVLTFDSFS 76


>tr|Q4D6B6|Q4D6B6_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053503865.60 PE=4 SV=1
          Length = 670

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 209 KAEVNRQANYHPDSDEDLSSGTKGFISRKGDINTQEHTGEQSRQNSASRHELTEELA 39
           +A +  + N  PD++ED +   KG ++R   +   + T  ++++  A RH+  EE A
Sbjct: 53  RARMLHEENGGPDNNEDETGRLKGEVARLRKLTEGQVTEAEAKEEEAKRHQAEEEAA 109