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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913094
Clone id YMU001_000026_D09
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCGCGCAGAGGCGATGGGATTTATCAAGGAGTTCTTTGGGTATCTCATTCAGCGGAGCA
TGGAGGATCCAGAAGAACGCGATCGCAAGATCCGCGAGCACATCATTACCACCAAGGCCA
ACGCCGAGAAGGTGAAGCAAAGATGGGCGCACCCTGTCAAGCCATACGGCTACTGGACCA
CCGATAAGTATAACTACAAGTACCAACTGGAACGTAAGATAAGCAATGCCCGAGGCCGCC
ACGATCCTTGGGACATTTTTTCCTAATCCCAGGTAAAGTTATCTGCAGTGGTTTCCATCA
GCATAAGTCACCAGATCTAATCGACAGTCTTGAGTATTCATAGAACTCTCCCGGTTGTGT
TGTTGTTTCTAGCAATGGATAATGTTTCAGGTTTTTTTGCTCTTGAAGTGCCGTCCTACA
TTTGAGTATCTTCAACATGCTGGAAGTCTGTACAAAAGCTTTCTTTTGGATTTTAGCTCT
TAAGAATCATTCGCGGCCGCGAATTCTTCCAGTT
■■Homology search results ■■ -
sp_hit_id A4IF98
Definition sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus
Align length 41
Score (bit) 33.5
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913094|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D09.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 ...    33   0.49 
sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI OS=Esche...    33   0.84 
sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 ...    32   1.9  
sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 ...    31   3.2  
sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing fami...    30   4.2  
sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel...    30   5.4  
sp|Q5ZJY5|SMC5_CHICK Structural maintenance of chromosomes prote...    30   7.1  
sp|Q9H4M7|PKHA4_HUMAN Pleckstrin homology domain-containing fami...    29   9.3  
sp|Q5U3J8|LTV1_DANRE Protein LTV1 homolog OS=Danio rerio GN=ltv1...    29   9.3  
sp|Q8G7I6|G6PI_BIFLO Glucose-6-phosphate isomerase OS=Bifidobact...    29   9.3  

>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1
           OS=Bos taurus GN=RMI1 PE=2 SV=1
          Length = 624

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 324 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 446
           HR LP  +L      ++GFFAL++ S + VS   +  +QKL
Sbjct: 66  HRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKL 106


>sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI
           OS=Escherichia coli (strain K12) GN=yahI PE=3 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 24  GYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQ 191
           GYLIQ+++ +   R  + +   + T+   +K    +AHP KP G + +D    + Q
Sbjct: 90  GYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSDSQRDELQ 145


>sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1
           OS=Mus musculus GN=Rmi1 PE=2 SV=1
          Length = 616

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 324 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 446
           H  LP  +L L    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1
           OS=Homo sapiens GN=RMI1 PE=1 SV=2
          Length = 625

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 324 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 446
           H  LP  +L +    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing family
           A member 4 OS=Mus musculus GN=Plekha4 PE=2 SV=1
          Length = 588

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/91 (27%), Positives = 36/91 (39%)
 Frame = +2

Query: 35  SAEHGGSRRTRSQDPRAHHYHQGQRREGEAKMGAPCQAIRLLDHR*V*LQVPTGT*DKQC 214
           S+E GG R  RS  PR     + + +  +A  G+              LQ+P        
Sbjct: 302 SSEAGGERPPRSPQPRTP---EQRTQSTQATSGSSTY-----------LQLP-------- 339

Query: 215 PRPPRSLGHFFLIPGKVICSGFHQHKSPDLI 307
           PRPP +     L+PG  + S  HQ    D +
Sbjct: 340 PRPPGTQASMILLPGPPVDSALHQSLETDTL 370


>sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel
            subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2
          Length = 2505

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 32   HSAEHGGSRRTRSQDPRA-----HHYHQGQRREGEAKMGAPCQAIRLLDHR 169
            H    GGSR +RS  PR      H  H+  RR GE   G   +A R   HR
Sbjct: 933  HVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEE--GPEDKAERRARHR 981


>sp|Q5ZJY5|SMC5_CHICK Structural maintenance of chromosomes protein
           5 OS=Gallus gallus GN=SMC5 PE=2 SV=1
          Length = 1065

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 33  IQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVK 146
           IQ+ ME  EE  +++ ++    K +  K+K+RW +P+K
Sbjct: 864 IQKLMESIEENKKELDDY----KQSISKIKERWLNPLK 897


>sp|Q9H4M7|PKHA4_HUMAN Pleckstrin homology domain-containing family
           A member 4 OS=Homo sapiens GN=PLEKHA4 PE=1 SV=2
          Length = 779

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 25/90 (27%), Positives = 34/90 (37%)
 Frame = +2

Query: 38  AEHGGSRRTRSQDPRAHHYHQGQRREGEAKMGAPCQAIRLLDHR*V*LQVPTGT*DKQCP 217
           +E GG +  RS        H  Q    +A  G+P             LQ+P        P
Sbjct: 303 SEAGGGKPPRSPQ------HWSQEPRTQAHSGSPTY-----------LQLP--------P 337

Query: 218 RPPRSLGHFFLIPGKVICSGFHQHKSPDLI 307
           RPP +     L+PG  + S FHQ    D +
Sbjct: 338 RPPGTRASMVLLPGPPLESTFHQSLETDTL 367


>sp|Q5U3J8|LTV1_DANRE Protein LTV1 homolog OS=Danio rerio GN=ltv1
           PE=2 SV=1
          Length = 469

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 27  YLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKI 206
           +L+ RS +DP   D    +H++      E  K++     + +G +  D Y+Y   L    
Sbjct: 19  HLVHRSQKDPLAADETAPQHVLLPTVRVELEKRK--EEQRNFGVFFDDDYDYLQHLREST 76

Query: 207 SNA 215
             A
Sbjct: 77  QTA 79


>sp|Q8G7I6|G6PI_BIFLO Glucose-6-phosphate isomerase
           OS=Bifidobacterium longum GN=pgi PE=3 SV=1
          Length = 566

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 51  DPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYW 161
           D  ++   I++H +    N EKV++    P   +G+W
Sbjct: 247 DEAQKAEAIKKHFVAVSTNLEKVEEFGIDPNNAFGFW 283
tr_hit_id A9RBY6
Definition tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 79
Score (bit) 91.7
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913094|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_D09.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella paten...    92   2e-17
tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative uncharacte...    89   1e-16
tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Popul...    87   4e-16
tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein OS=Hyaci...    86   1e-15
tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus orie...    86   1e-15
tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea m...    83   6e-15
tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subs...    82   1e-14
tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14
tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genom...    82   2e-14
tr|A5BVR1|A5BVR1_VITVI Putative uncharacterized protein OS=Vitis...    82   2e-14
tr|A9NN34|A9NN34_PICSI Putative uncharacterized protein OS=Picea...    72   1e-11
tr|Q2PXN5|Q2PXN5_ARAHY RW1-like protein (Fragment) OS=Arachis hy...    71   3e-11
tr|A4S8M2|A4S8M2_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.13 
tr|A6PQ76|A6PQ76_9BACT Putative uncharacterized protein OS=Victi...    34   3.2  
tr|A8N361|A8N361_COPC7 Putative uncharacterized protein OS=Copri...    33   5.4  
tr|Q30X26|Q30X26_DESDG Putative uncharacterized protein OS=Desul...    33   7.1  
tr|B0VF60|B0VF60_9BACT Putative N6 adenine-specific DNA methyltr...    33   7.1  
tr|B7QNI8|B7QNI8_IXOSC UDP-GalNAc:beta-1,3-N-acetylgalactosaminy...    33   7.1  
tr|Q3Z573|Q3Z573_SHISS Putative kinase OS=Shigella sonnei (strai...    33   9.3  
tr|B6I0A3|B6I0A3_ECOSE Carbamate kinase OS=Escherichia coli (str...    33   9.3  
tr|B1J0V4|B1J0V4_ECOLC Carbamate kinase OS=Escherichia coli (str...    33   9.3  
tr|A7ZI65|A7ZI65_ECO24 Carbamate kinase family protein OS=Escher...    33   9.3  
tr|Q1JXT0|Q1JXT0_DESAC Putative uncharacterized protein OS=Desul...    33   9.3  
tr|B7L452|B7L452_ECOLX Putative carbamate kinase OS=Escherichia ...    33   9.3  
tr|B3XFB5|B3XFB5_ECOLX Carbamate kinase family protein OS=Escher...    33   9.3  
tr|B3WL30|B3WL30_ECOLX Carbamate kinase family protein OS=Escher...    33   9.3  
tr|B3IJ37|B3IJ37_ECOLX Carbamate kinase family protein OS=Escher...    33   9.3  
tr|B3I700|B3I700_ECOLX Carbamate kinase family protein OS=Escher...    33   9.3  
tr|B3H9R7|B3H9R7_ECOLX Carbamate kinase family protein OS=Escher...    33   9.3  

>tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62174 PE=4 SV=1
          Length = 89

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 39/79 (49%), Positives = 56/79 (70%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GF+ EF  + I+RSME+P+ERD K R+H+ +TK    K+K+ WA+PVKPYG W TDK N+
Sbjct: 2   GFMMEFVEHWIRRSMENPDERDAKFRKHVYSTKEQCVKLKESWANPVKPYGSWNTDKNNH 61

Query: 183 KYQLERKISNARGRHDPWD 239
           K+  +  +S   GR DP++
Sbjct: 62  KFLQDLTLSRMPGRSDPYE 80


>tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 98

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 38/79 (48%), Positives = 54/79 (68%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GFI EF   L+ R ME+PEERDRK REHI       +K+K+ WA P++PYG+WT +++N 
Sbjct: 2   GFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHNA 61

Query: 183 KYQLERKISNARGRHDPWD 239
           + + + +IS   GR DP+D
Sbjct: 62  QLRWDPQISQVAGRRDPYD 80


>tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 91

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 36/79 (45%), Positives = 53/79 (67%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GFI EF   L+ R MEDP+ERDRK RE +   K   +K K+ W++P++PYG+WT +++N 
Sbjct: 2   GFIMEFAENLVLRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNA 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS   GR DP+D
Sbjct: 62  QLAWDAQISQVPGRRDPYD 80


>tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein
           OS=Hyacinthus orientalis PE=4 SV=1
          Length = 91

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 35/78 (44%), Positives = 52/78 (66%)
 Frame = +3

Query: 6   FIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYK 185
           F+ EF   LI R MEDP+ERD++ REH+   K   +K K+ W+ P++PYG+WT D++N +
Sbjct: 3   FVMEFAENLILRMMEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFNAQ 62

Query: 186 YQLERKISNARGRHDPWD 239
              + +IS   GR DP+D
Sbjct: 63  LAWDSQISQVPGRRDPYD 80


>tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus
           orientalis PE=4 SV=1
          Length = 91

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 35/78 (44%), Positives = 52/78 (66%)
 Frame = +3

Query: 6   FIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYK 185
           F+ EF   LI R MEDP+ERD++ REH+   K   +K K+ W+ P++PYG+WT D++N +
Sbjct: 3   FVMEFAENLILRMMEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFNAQ 62

Query: 186 YQLERKISNARGRHDPWD 239
              + +IS   GR DP+D
Sbjct: 63  LAWDAQISQVPGRRDPYD 80


>tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 36/79 (45%), Positives = 52/79 (65%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GFI +F   LI R MEDP++RD+  REH+   K   E+ K  W+ P++PYG+WT D++N 
Sbjct: 2   GFIMDFAENLILRLMEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFNS 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS A GR DP+D
Sbjct: 62  QLSWDPQISQAAGRRDPYD 80


>tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0024N19.16 PE=4 SV=1
          Length = 94

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 51/79 (64%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GF+ EF   LI R MEDP +RD   REH+   K   E+ K  W+ P++PYG+WT D++N 
Sbjct: 2   GFVMEFAENLILRMMEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFNS 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS+A GR DP+D
Sbjct: 62  QLSWDPQISHAPGRRDPYD 80


>tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 35/79 (44%), Positives = 52/79 (65%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GFI +F   +I R MEDP++RD+  REH+   K   E+ K  W+ P++PYG+WT D++N 
Sbjct: 2   GFIMDFAENMILRLMEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFNS 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS A GR DP+D
Sbjct: 62  QLSWDPQISQAAGRRDPYD 80


>tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13066 PE=4 SV=1
          Length = 94

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 51/79 (64%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GF+ EF   LI R MEDP +RD   REH+   K   E+ K  W+ P++PYG+WT D++N 
Sbjct: 2   GFVMEFAENLILRMMEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFNS 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS+A GR DP+D
Sbjct: 62  QLSWDPQISHAPGRRDPYD 80


>tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002814001
           PE=4 SV=1
          Length = 91

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 34/79 (43%), Positives = 52/79 (65%)
 Frame = +3

Query: 3   GFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNY 182
           GFI EF   LI + MEDP+ERDR+ RE +   K   ++ K+ W+ P++PYG+WT +++N 
Sbjct: 2   GFIMEFAENLILKLMEDPKERDRRARERLYAVKDRCDRTKEIWSFPIRPYGFWTFERHNS 61

Query: 183 KYQLERKISNARGRHDPWD 239
           +   + +IS   GR DP+D
Sbjct: 62  QLAWDPQISQVPGRRDPYD 80