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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913101
Clone id YMU001_000026_E04
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACATGACATAGATGAGTGTTGGAGATGTATGCATGTCTTTACCTAGCGGTGCATTGCTT
ACGCTACGAGATGTAGGTTATGTACCAGGACTCAGCTAGAGTCTCATTTCAGTGCGTCAA
TTGCAGAGTAGTGGACATTGTGAACTGCTTGGCGAGCGGTCATTTCAAATGCATAGGGGA
TCAGTGGTGATAGCCAGAGGTGCTAGGAGTGGTCTGGTATACCCTTTGCATATTCTGACA
CACGAGGCGGTGTAGTCTCTGTATATTTGCAGCCATGTTTGGAGCAAGAGGCGAGGCGTG
TCTCCTTTGCGGATGTGCTGCATGGAGAGCAGGTTGTGCATTTGTCTTGTGGTGACGCTC
AGCAGATAGTGGTATCTCTGGGGATGTACAACTTTGTCAGTCATCAGTTGAGGTGACATC
AGTTGAGCCAGAGACCGATGCATTGTTCTATGATGCGTCTGATATGTTAGAGGGTGACG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 68
Score (bit) 49.3
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913101|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E04.
         (479 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    49   9e-06
sp|A2AFS3|K1324_MOUSE UPF0577 protein KIAA1324 OS=Mus musculus G...    32   1.1  
sp|Q6UXG2|K1324_HUMAN UPF0577 protein KIAA1324 OS=Homo sapiens G...    32   1.9  
sp|Q99700|ATX2_HUMAN Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2       30   5.6  
sp|O31935|YOPC_BACSU SPBc2 prophage-derived uncharacterized prot...    30   7.4  
sp|Q2GVT8|SEC31_CHAGB Protein transport protein SEC31 OS=Chaetom...    30   7.4  
sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1       30   7.4  
sp|O49316|FB122_ARATH Putative F-box protein At2g33190 OS=Arabid...    29   9.6  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 24/68 (35%), Positives = 39/68 (57%)
 Frame = +1

Query: 19  VGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVIAR 198
           +GD+C+    G  L L+DV +VP L  +LIS   L   G+      + +++ +GS+VIA+
Sbjct: 335 IGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAK 394

Query: 199 GARSGLVY 222
           G   G +Y
Sbjct: 395 GVARGTLY 402


>sp|A2AFS3|K1324_MOUSE UPF0577 protein KIAA1324 OS=Mus musculus
           GN=Kiaa1324 PE=2 SV=1
          Length = 1009

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
 Frame = -2

Query: 388 YIPRDTTIC*ASPQDK---------CTTCSPCSTSAKETRLASCSKHGCKYTETTPPRVS 236
           YI RD+  C   P +             C PC    K  ++ S   + C ++  TP R+ 
Sbjct: 606 YINRDSGTCHLCPSNTILKAHQPYGAQACVPCGPGTKNNKIHSLCYNDCTFSRNTPSRIF 665

Query: 235 EY 230
            Y
Sbjct: 666 NY 667


>sp|Q6UXG2|K1324_HUMAN UPF0577 protein KIAA1324 OS=Homo sapiens
           GN=KIAA1324 PE=2 SV=2
          Length = 1013

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
 Frame = -2

Query: 388 YIPRDTTIC*ASPQDKCT---------TCSPCSTSAKETRLASCSKHGCKYTETTPPRVS 236
           YI RD+  C + P +             C PC    K  ++ S   + C ++  TP R  
Sbjct: 610 YIDRDSGTCHSCPTNTILKAHQPYGVQACVPCGPGTKNNKIHSLCYNDCTFSRNTPTRTF 669

Query: 235 EY 230
            Y
Sbjct: 670 NY 671


>sp|Q99700|ATX2_HUMAN Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2
          Length = 1313

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -3

Query: 366  SAERHHKTNAQPALHAAHPQRRHA------SPLAPNM--AANIQRLHRLVCQNMQRVYQT 211
            S  +HH+  A  ALH A PQ++ A      +P  P+M  A+N Q          Q V+  
Sbjct: 1169 SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTI 1228

Query: 210  TPSTSGYHH*SPMHL 166
             PS     + +P H+
Sbjct: 1229 HPSHVQPAYTNPPHM 1243


>sp|O31935|YOPC_BACSU SPBc2 prophage-derived uncharacterized protein
           yopC OS=Bacillus subtilis GN=yopC PE=4 SV=1
          Length = 442

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
 Frame = +1

Query: 106 ISVRQLQSSGHCELLGE----------RSFQMHRGS 183
           I VRQ + SGHC LLGE           +FQ H+ S
Sbjct: 363 IPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDS 398


>sp|Q2GVT8|SEC31_CHAGB Protein transport protein SEC31 OS=Chaetomium
            globosum GN=SEC31 PE=3 SV=1
          Length = 1258

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 348  KTNAQPALHAAHPQRRHASPLAPNMAANIQRLHRLVCQNMQRVYQTTPST 199
            +T   P   A  P  RH +    ++  + QR+  L+ Q+MQRV    P+T
Sbjct: 1128 QTPPPPRAAATPPAARHPAGDRSHIPPDAQRMVELLSQDMQRVASKAPAT 1177


>sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1
          Length = 1285

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -3

Query: 366  SAERHHKTNAQPALHAAHPQRRHA------SPLAPNM--AANIQRLHRLVCQNMQRVYQT 211
            S  +HH+  A  ALH A PQ++ A      +P  P+M  A+N Q          Q V+  
Sbjct: 1142 SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTI 1201

Query: 210  TPSTSGYHH*SPMHL 166
             PS     + +P H+
Sbjct: 1202 HPSHVQPAYTTPPHM 1216


>sp|O49316|FB122_ARATH Putative F-box protein At2g33190
           OS=Arabidopsis thaliana GN=At2g33190 PE=2 SV=1
          Length = 379

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 392 VVHPQRYHYLLSVTTRQMHNLLSMQHIRKGDTP 294
           +V P+   YLL+V TR+  NL S++   +GD P
Sbjct: 94  IVDPRLDFYLLNVFTRETINLPSLESSLRGDRP 126
tr_hit_id A5BAF2
Definition tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 70
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913101|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E04.
         (479 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis...    55   1e-06
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    55   2e-06
tr|A5B0E4|A5B0E4_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    54   4e-06
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    54   4e-06
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5BM25|A5BM25_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5AYT3|A5AYT3_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acum...    54   5e-06
tr|A5BBW7|A5BBW7_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...    53   9e-06
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    53   9e-06
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06

>tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027081 PE=4 SV=1
          Length = 1204

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/70 (35%), Positives = 44/70 (62%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +   +G +LTL++V ++P +  +LIS R+L   G C    +  + + RGS+VI
Sbjct: 282 IGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGFCNTFRDSQWNLTRGSMVI 341

Query: 193 ARGARSGLVY 222
           A+G +S  +Y
Sbjct: 342 AKGNKSSSLY 351


>tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana
           tabacum PE=4 SV=1
          Length = 1338

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)
 Frame = +1

Query: 22  GDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVIARG 201
           GDVC+   +G  L LRDV +VP +  +LISV +L   G+C       +++ +GS+++ARG
Sbjct: 334 GDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARG 393

Query: 202 ARSGLVY 222
            +   +Y
Sbjct: 394 TKQSKLY 400


>tr|A5B0E4|A5B0E4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022906 PE=4 SV=1
          Length = 1091

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LIS+ QL   GH  L    ++++ +G+ V+
Sbjct: 221 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEGHAILFVGGTWKVTKGARVL 280

Query: 193 ARGARSGLVYPLHILTHE-AV*SLYICSHVWSKRRG 297
           ARG ++G +Y         AV    I + +W +R G
Sbjct: 281 ARGKKTGTLYMTSCPRDTIAVADASIDTSIWHRRLG 316


>tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024822 PE=4 SV=1
          Length = 1250

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 325 VGLGDVRISLPNGSVWLLEKVRHIPDLKRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 384

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 385 ARGKKTGTLY 394


>tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037436 PE=4 SV=1
          Length = 1183

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 288 VGLGDVRISLPNGSVCLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 347

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 348 ARGKKTGTLY 357


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009987001 PE=4 SV=1
          Length = 466

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 265 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 324

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 325 ARGKKTGTLY 334


>tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037749001 PE=4 SV=1
          Length = 788

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 608 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 667

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 668 ARGKKTGTLY 677


>tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001479 PE=4 SV=1
          Length = 1246

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 297 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 356

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 357 ARGKKTGTLY 366


>tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040966 PE=4 SV=1
          Length = 1212

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 325 VGLGDVRISLPNGSVWLLEKVRHIPDLXRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 384

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 385 ARGKKTGTLY 394


>tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034935 PE=4 SV=1
          Length = 1137

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 46/70 (65%)
 Frame = +1

Query: 13  MSVGDVCMSLPSGALLTLRDVGYVPGLS*SLISVRQLQSSGHCELLGERSFQMHRGSVVI 192
           + +GDV +SLP+G++  L  V ++P L  +LISV QL   GH  L    ++++ +G+ V+
Sbjct: 279 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 338

Query: 193 ARGARSGLVY 222
           ARG ++G +Y
Sbjct: 339 ARGKKTGTLY 348