BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913102|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E05.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09729|YA4C_SCHPO Arrestin domain-containing protein C31A2.12...    35   0.23 
sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 O...    35   0.30 
sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus...    32   1.5  
sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-cont...    32   2.0  
sp|Q9H7N4|SFR19_HUMAN Splicing factor, arginine/serine-rich 19 O...    32   2.6  
sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus l...    32   2.6  
sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1       31   3.4  
sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thalian...    31   4.4  
sp|P58505|CU058_HUMAN Uncharacterized protein C21orf58 OS=Homo s...    30   5.7  
sp|Q8R5G7|ARAP3_MOUSE Arf-GAP, Rho-GAP domain, ANK repeat and PH...    30   5.7  
sp|O16686|YK27_CAEEL Uncharacterized protein K07E8.7 OS=Caenorha...    30   7.5  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    30   7.5  
sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=...    30   7.5  
sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 O...    30   7.5  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         30   7.5  
sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN...    30   7.5  
sp|P37889|FBLN2_MOUSE Fibulin-2 OS=Mus musculus GN=Fbln2 PE=1 SV=1     30   7.5  
sp|Q9Y6H8|CXA3_HUMAN Gap junction alpha-3 protein OS=Homo sapien...    30   7.5  
sp|P98195|ATP9B_MOUSE Probable phospholipid-transporting ATPase ...    30   7.5  
sp|Q9ERR8|ZN319_MOUSE Zinc finger protein 319 OS=Mus musculus GN...    30   9.8  
sp|P03186|TEGU_EBV Large tegument protein OS=Epstein-Barr virus ...    30   9.8  

>sp|Q09729|YA4C_SCHPO Arrestin domain-containing protein C31A2.12
           OS=Schizosaccharomyces pombe GN=SPAC31A2.12 PE=1 SV=1
          Length = 596

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
 Frame = -2

Query: 530 LFDLSH--SLKVASR--VESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF- 366
           L DLS   S K A+R  V  ES    +  S  D  ++  ++RPP P    P + TSP+F 
Sbjct: 453 LADLSRVPSYKEATRSAVPLESPLQSTLPSYEDVARIEHLSRPPSPGIVTPPQRTSPSFF 512

Query: 365 ---*PFTLLDLDASR----YSSSKNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPS 216
                 T   LD+ R     +SS + +S +   +++ H S A  P     A  RP S
Sbjct: 513 VSPTESTRQSLDSRRSFEHSTSSSSGISPSHSSASLAHLSQASNPNGSSSAPHRPTS 569


>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31
            OS=Homo sapiens GN=USP31 PE=1 SV=2
          Length = 1352

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = -2

Query: 518  SHSLKVASRVESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLD 339
            SH   +A + ES ++ SPS+  T++P K L   RP L    + L  TSP+      + L 
Sbjct: 1010 SHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLK 1069

Query: 338  ASRYSS---SKNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPSEEK 207
             SR  S   S ++ S      A        +P + D      P ++K
Sbjct: 1070 PSRSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQK 1116


>sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus
           musculus GN=Edc4 PE=1 SV=2
          Length = 1406

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 338 ASRYSSSKNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPSE 213
           +S  SSS +  SS+   S++   S   +  A+D ++PRPP E
Sbjct: 614 SSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPRPPEE 655


>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA
           domain-containing protein 2 OS=Mus musculus GN=Rprd2
           PE=1 SV=1
          Length = 1469

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = -2

Query: 503 VASRVESESETSPSALSTADPPKLLPVTRPPLPLSCN-PLR*TSPTF*PFTLLDLDASRY 327
           V++ V ++S  S S  S   PP +     PPLP   +  L   SPT     L ++D ++ 
Sbjct: 416 VSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVLPNLANVDLAKI 475

Query: 326 SSSKNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPS 216
           SS  + ++S  +++ ++  S   +PG     +P  PS
Sbjct: 476 SSILSSLTSVMKNTGVSSASRP-SPG-----IPTSPS 506


>sp|Q9H7N4|SFR19_HUMAN Splicing factor, arginine/serine-rich 19
           OS=Homo sapiens GN=SCAF1 PE=1 SV=2
          Length = 1312

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 28/98 (28%), Positives = 38/98 (38%)
 Frame = -2

Query: 497 SRVESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLDASRYSSS 318
           S   S    SPS+ S + PP       PP P    P       + PF   D +A     +
Sbjct: 191 SSASSSPSPSPSSSSPSPPPP------PPPPAPPAPPAPRFDIYDPFHPTD-EAYSPPPA 243

Query: 317 KNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPSEEKE 204
             Q    FE +  N  S+AGTP   ++       EE+E
Sbjct: 244 PEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEE 281


>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus
           laevis GN=prpf39 PE=2 SV=1
          Length = 641

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 23/56 (41%), Positives = 27/56 (48%)
 Frame = -2

Query: 485 SESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLDASRYSSS 318
           S S  + SA S  +PP  LP T PPLP +  PL  T P   P   L  D  +Y  S
Sbjct: 12  SPSPATESAPSATEPP--LPSTEPPLPSTEPPLPSTEP---PLPPLPPDFEKYWKS 62


>sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1
          Length = 1285

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
 Frame = -2

Query: 518 SHSLKVASRVESESETSPSALSTADPPKLLPVTRP------------PLPLSCNPLR*TS 375
           SHS +  SR +S   + P   +T   P   P +RP            P P+S  P R +S
Sbjct: 527 SHSSRPPSRYQSGPNSLPPRAATHTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSS 586

Query: 374 ---PTF*PFTLLDLDASRYSSSKNQMSSTFEHSAINHKSTAGTP 252
              P   P         R S+ +  MSS  E  + N  S A  P
Sbjct: 587 EGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAP 630


>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana
           GN=FH1 PE=1 SV=1
          Length = 1051

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -2

Query: 524 DLSHSLKVASRVESESETSPSALSTADPPKLLPVTRPPLPL 402
           D SHSL V+ R+   S  SP  L +  PP   P   PPLPL
Sbjct: 502 DFSHSLDVSPRI---SNISPQILQSRVPPP--PPPPPPLPL 537


>sp|P58505|CU058_HUMAN Uncharacterized protein C21orf58 OS=Homo
           sapiens GN=C21orf58 PE=2 SV=2
          Length = 322

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -2

Query: 515 HSLKVASRVESESETSPSALSTADPPKLLPV----TRPPLPLSCNPLR*TSPT 369
           H L   SR ++ S  S  AL +A PP+L P     T  P PL+ +P R   PT
Sbjct: 151 HLLDELSRAQAWSGPSRGALGSALPPELPPTGILPTASPSPLAPDPPRIILPT 203


>sp|Q8R5G7|ARAP3_MOUSE Arf-GAP, Rho-GAP domain, ANK repeat and PH
           domain-containing protein 3 OS=Mus musculus GN=Arap3
           PE=1 SV=2
          Length = 1538

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 28/89 (31%), Positives = 38/89 (42%)
 Frame = -2

Query: 497 SRVESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLDASRYSSS 318
           S +++  E +PS    A PPK +P  R    LS NP     P   P    D + SR +S 
Sbjct: 73  SHLDNTMEPTPSPAPDAQPPKPVPKPRTVFGLS-NPATAQRPGLSPI-FWDPEVSR-NSE 129

Query: 317 KNQMSSTFEHSAINHKSTAGTPGALDKAM 231
             Q SS    S+  H S   T   +  A+
Sbjct: 130 CTQRSSPLLPSSSEHPSVPNTMEMMPNAI 158

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913102|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E05.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|A9RJ20|A9RJ20_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.061
tr|B4NA46|B4NA46_DROWI GK11433 OS=Drosophila willistoni GN=GK114...    36   1.5  
tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   1.5  
tr|A1CFN0|A1CFN0_ASPCL Nonribosomal peptide synthase, putative O...    35   2.0  
tr|Q9SI74|Q9SI74_ARATH F23N19.12 OS=Arabidopsis thaliana GN=At1g...    35   2.5  
tr|Q4KXD9|Q4KXD9_LOPEL Early salt stress and cold acclimation-in...    35   3.3  
tr|B3KS48|B3KS48_HUMAN cDNA FLJ35471 fis, clone SMINT2006708, hi...    35   3.3  
tr|Q4KXE0|Q4KXE0_WHEAT Cold acclimation induced protein 2-1 OS=T...    34   4.3  
tr|Q63714|Q63714_RAT Rat GCP360 OS=Rattus norvegicus GN=Golgb1 P...    34   5.6  
tr|Q571K1|Q571K1_MOUSE MKIAA4151 protein (Fragment) OS=Mus muscu...    34   5.6  
tr|Q3UYL3|Q3UYL3_MOUSE Putative uncharacterized protein (Fragmen...    34   5.6  
tr|B2RWW2|B2RWW2_MOUSE Golgb1 protein OS=Mus musculus GN=Golgb1 ...    34   5.6  
tr|A7T104|A7T104_NEMVE Predicted protein OS=Nematostella vectens...    34   5.6  
tr|Q4P8G0|Q4P8G0_USTMA Putative uncharacterized protein OS=Ustil...    34   5.6  
tr|B4PWR6|B4PWR6_DROYA GE17209 OS=Drosophila yakuba GN=GE17209 P...    33   7.3  
tr|B4JMT3|B4JMT3_DROGR GH24271 OS=Drosophila grimshawi GN=GH2427...    33   7.3  
tr|Q4WRV5|Q4WRV5_ASPFU Gelsolin repeat protein, putative OS=Aspe...    33   7.3  
tr|B0XN43|B0XN43_ASPFC Gelsolin repeat protein, putative OS=Aspe...    33   7.3  
tr|Q7S9I0|Q7S9I0_NEUCR Predicted protein OS=Neurospora crassa GN...    33   9.5  
tr|Q755Q6|Q755Q6_ASHGO AFL194Wp OS=Ashbya gossypii GN=AFL194W PE...    33   9.5  
tr|Q2H3H6|Q2H3H6_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.7  
tr|A1CV28|A1CV28_NEOFI Nonribosomal peptide synthase, putative O...    33   9.7  

>tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_152183 PE=4 SV=1
          Length = 2048

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +1

Query: 256 VPAVLLWLIAECSKVLDIWFLLDEYREASKSSRV 357
           VP  LLWLIAEC++VLDIW  +D  RE+ KS ++
Sbjct: 538 VPHSLLWLIAECTQVLDIWLGVDASRESVKSGQL 571


>tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161713 PE=4 SV=1
          Length = 2612

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +1

Query: 256 VPAVLLWLIAECSKVLDIWFLLDEYREASKSSR 354
           +PA L+WLI+EC++VLD W  LD  RE +KS +
Sbjct: 596 MPASLVWLISECTQVLDTWLRLDAAREVAKSGQ 628


>tr|A9RJ20|A9RJ20_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66784 PE=4 SV=1
          Length = 654

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +1

Query: 232 IALSRAPGVPAVLLWLIAECSKVLDIWFLLDEYREASKSSR 354
           + +    G+   ++WLI+EC++VLD WF LD  RE +KS +
Sbjct: 581 VTVDSVEGIHTSMVWLISECTQVLDTWFGLDAAREVAKSGQ 621


>tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_132476 PE=4 SV=1
          Length = 1995

 Score = 40.4 bits (93), Expect = 0.061
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 256 VPAVLLWLIAECSKVLDIWFLLDEYREASK 345
           +PA L WLI+EC +VLD W  LD  RE S+
Sbjct: 540 IPASLAWLISECIQVLDTWLALDVAREGSR 569


>tr|B4NA46|B4NA46_DROWI GK11433 OS=Drosophila willistoni GN=GK11433
           PE=4 SV=1
          Length = 992

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -3

Query: 382 EQVQLFDHSPCLTWMPHDIHRVKT---RCQAPSNTQQSTIKAQQEHLVLLIKQCQDHHQR 212
           +Q +   H P L+  PH +    T      A    QQ  ++ QQ+HL   ++Q Q   Q+
Sbjct: 263 QQQRFLSHQPSLSPHPHRLQSSSTPPGLQHALQQQQQHLLQQQQQHLQQQLQQQQQQQQQ 322

Query: 211 KRSWLLG*LPQLHRHQHP*EP 149
            +        Q H H HP +P
Sbjct: 323 HQQ-------QQHHHAHPHQP 336


>tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127907 PE=4 SV=1
          Length = 2015

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 256 VPAVLLWLIAECSKVLDIWFLLDEYREASKSSRV 357
           V A L+W ++EC++VL  W  LD  RE+ KS ++
Sbjct: 554 VSASLVWFVSECAQVLVTWLSLDASRESVKSGQL 587


>tr|A1CFN0|A1CFN0_ASPCL Nonribosomal peptide synthase, putative
            OS=Aspergillus clavatus GN=ACLA_093780 PE=3 SV=1
          Length = 6199

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 52   ISDEDDAIHGHAKIGRTSAGSDVSGKVGTCNNLVPM 159
            +SD  D + GH   GR   G+D+   +G C N++P+
Sbjct: 5916 LSDTTDVVFGHVTSGRNIPGTDMERIIGACLNIIPV 5951


>tr|Q9SI74|Q9SI74_ARATH F23N19.12 OS=Arabidopsis thaliana
           GN=At1g62760 PE=4 SV=1
          Length = 312

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 530 LFDLSHSLKVASRVESESETSPSALSTADPP--KLLPVTRPPLPLSCNPLR*TSPT 369
           L  LS SL  +    S S   PS+LS + PP   L P + PP P S +PL   SP+
Sbjct: 78  LSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPS 133



 Score = 33.9 bits (76), Expect = 5.6
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 518 SHSLKVASRVESESETSPSALSTADPP--KLLPVTRPPLPLSCNPLR*TSPTF*P 360
           S SL  +    S S   PS+LS + PP   L P + PP P S +PL   SP+  P
Sbjct: 33  SPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSP 87


>tr|Q4KXD9|Q4KXD9_LOPEL Early salt stress and cold
           acclimation-induced protein 2-1 OS=Lophopyrum elongatum
           GN=Esi2 PE=4 SV=1
          Length = 304

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 25/92 (27%), Positives = 33/92 (35%)
 Frame = -2

Query: 491 VESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLDASRYSSSKN 312
           V S   T P  L    PP + P + PP+P   +P   T P+  P        S    S  
Sbjct: 124 VLSVDHTPPGLLPAPPPPSMPPSSAPPMPSPMSPPSMTPPSAAPMPSPMSPPSMTPPSAA 183

Query: 311 QMSSTFEHSAINHKSTAGTPGALDKAMPRPPS 216
            M S     ++   S A  P  +      PPS
Sbjct: 184 PMPSPMSPPSMTPPSAAPMPSPMSPPSMTPPS 215


>tr|B3KS48|B3KS48_HUMAN cDNA FLJ35471 fis, clone SMINT2006708,
           highly similar to Homo sapiens ubiquitin specific
           peptidase 31 (USP31), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 645

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = -2

Query: 518 SHSLKVASRVESESETSPSALSTADPPKLLPVTRPPLPLSCNPLR*TSPTF*PFTLLDLD 339
           SH   +A + ES ++ SPS+  T++P K L   RP L    + L  TSP+      + L 
Sbjct: 303 SHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLK 362

Query: 338 ASRYSS---SKNQMSSTFEHSAINHKSTAGTPGALDKAMPRPPSEEK 207
            SR  S   S ++ S      A        +P + D      P ++K
Sbjct: 363 PSRSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQK 409