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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913103
Clone id YMU001_000026_E06
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTTGCTCAATGCATGTCGGTTACAAAACCAAGACTATGTCGTCTCATACCTCAGATACA
TGCATAGGATATACCAAGCTACTCCGGGTTCCTCAGGCAATCACTAGTGATCCGCAATGC
ATCTAGAAAGACTACTCTCTAAGCAGTGTCTGACACCCACAATCTGCTAACTGTTTCACT
GAGATAACGCTCTATCGCAACTGAGGAACATAGCACACATGTTGTAGCGTATAGGATGCA
CCAATTTTGGTCAATCAAACCTATTCATTCTGGTGCAAGACCTCTTTCACATCAACCTCG
ACACTCATGCCAAAGACAGTACCGAGATCAACTTCGATGCCTCCATCACTACCTCATCAT
TGTTGTCTACCAATGGTCTCATGCATTTTTTAAGGGAGAATATTGTTGGACACTTTTAGA
AGACAAGGCTCTTTTACTTACCTAAATTGTGTTATGAGCTGTGTAATCAATCATCCCTAA
CGTCATGGTTCGTACTTGCATTGAATGAAAATTCTACTGAGATGATTTTTCATGAAGCTA
TACAGCTACTCACATC
■■Homology search results ■■ -
sp_hit_id P82198
Definition sp|P82198|BGH3_MOUSE Transforming growth factor-beta-induced protein ig-h3 OS=Mus musculus
Align length 39
Score (bit) 30.4
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913103|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E06.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P82198|BGH3_MOUSE Transforming growth factor-beta-induced pro...    30   6.0  

>sp|P82198|BGH3_MOUSE Transforming growth factor-beta-induced
           protein ig-h3 OS=Mus musculus GN=Tgfbi PE=2 SV=1
          Length = 683

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 315 DSTEINFDASITTSSLLSTNGLMHFLRENIVGHF*KTRL 431
           D   IN  A I+   +L+TNG++HF+ E ++    KT L
Sbjct: 342 DKLTINGKAVISNKDILATNGVIHFIDELLIPDSAKTLL 380
tr_hit_id A5C540
Definition tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 63
Score (bit) 40.0
E-value 0.083
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913103|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_E06.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis...    40   0.083
tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.083
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.32 
tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.70 
tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis...    37   0.70 
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.70 
tr|Q9ZUF2|Q9ZUF2_ARATH Putative retroelement pol polyprotein OS=...    36   1.6  
tr|Q9SHT5|Q9SHT5_ARATH Putative retroelement pol polyprotein OS=...    34   4.6  
tr|Q9LKT8|Q9LKT8_ARATH Putative uncharacterized protein T32B20.i...    34   6.0  
tr|A5B8H2|A5B8H2_VITVI Putative uncharacterized protein OS=Vitis...    34   6.0  
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis...    33   7.8  

>tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024474 PE=4 SV=1
          Length = 1207

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 23/63 (36%), Positives = 38/63 (60%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T  G   TL++V ++P +R ++IS  +L D G   + R+  + +  GS+VIA G +SS +
Sbjct: 222 TSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFYNIFRDSQWKLTRGSMVIAKGNKSSSL 281

Query: 71  YPM 63
           Y M
Sbjct: 282 YLM 284


>tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027081 PE=4 SV=1
          Length = 1204

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T  G   TL++V ++P +R ++IS ++L D G     R+  + +  GS+VIA G +SS +
Sbjct: 291 TSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGFCNTFRDSQWNLTRGSMVIAKGNKSSSL 350

Query: 71  YPMHVSEV*DDI 36
           Y M    +  +I
Sbjct: 351 YLMQARVIDSNI 362


>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007304 PE=4 SV=1
          Length = 1362

 Score = 38.1 bits (87), Expect = 0.32
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T  G   TL++V ++P +R ++IS  +L D G     R+  + +  GS+VIA G +SS +
Sbjct: 319 TSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSL 378

Query: 71  YPM 63
           Y M
Sbjct: 379 YLM 381


>tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038145 PE=4 SV=1
          Length = 579

 Score = 37.7 bits (86), Expect = 0.41
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T IG    L+ V +VP +R S+ISV +L D G  + L E  + +  GSLV+  G +++ +
Sbjct: 216 TXIGCKLVLKDVRHVPXMRFSLISVGKLDDEGYHSHLGEGKWKITKGSLVLXRGKKNNTL 275

Query: 71  YPMHV 57
           Y + V
Sbjct: 276 YKIEV 280


>tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030853 PE=4 SV=1
          Length = 1017

 Score = 37.0 bits (84), Expect = 0.70
 Identities = 22/65 (33%), Positives = 37/65 (56%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T  G   TL++V ++P +R ++IS ++L D G     R+  + +  GS+VI    +SS +
Sbjct: 93  TSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGLCNTFRDSQWKLTRGSMVITKENKSSSL 152

Query: 71  YPMHV 57
           Y M V
Sbjct: 153 YLMQV 157


>tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010268 PE=4 SV=1
          Length = 761

 Score = 37.0 bits (84), Expect = 0.70
 Identities = 23/75 (30%), Positives = 42/75 (56%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T I     +++V +VP++  S+ISV++L D G  + L E  +    GSLV+A G +++  
Sbjct: 168 TSIRCKLVMKYVRHVPEMHFSLISVRKLDDEGYHSHLGESKWKXTXGSLVLARGKKNNTF 227

Query: 71  YPMHVSEV*DDIVLV 27
           Y +    V  ++ +V
Sbjct: 228 YKIEARLVKGEVNIV 242


>tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018405 PE=4 SV=1
          Length = 1302

 Score = 37.0 bits (84), Expect = 0.70
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = -3

Query: 251 TKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE*SF*MHCGSLVIA*GTRSSLV 72
           T  G   TL++V ++P +R ++IS  +L D G     R+  + +  GS+ IA G +SS +
Sbjct: 206 TSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSL 265

Query: 71  YPM 63
           Y M
Sbjct: 266 YLM 268


>tr|Q9ZUF2|Q9ZUF2_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g05960 PE=2 SV=1
          Length = 1200

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 254 LTKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE 135
           LTK G   TL +V Y+P L+ ++IS+ Q  + GC   L++
Sbjct: 304 LTKNGEPKTLANVYYIPDLKSNIISLGQATEAGCDVRLKD 343


>tr|Q9SHT5|Q9SHT5_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g05390 PE=2 SV=1
          Length = 1307

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -3

Query: 314 FGMSVEVDVKEVLHQNE*V*LTKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE 135
           FG    +D+K    +   V +TK G   TL  V ++P L+ ++IS+ Q  + GC   +++
Sbjct: 310 FGDDSRIDIKG---KGSIVLITKGGIRKTLTDVYFIPDLKSNIISLGQATEAGCDVRMKD 366

Query: 134 *SF*MH 117
               +H
Sbjct: 367 DQLTLH 372


>tr|Q9LKT8|Q9LKT8_ARATH Putative uncharacterized protein T32B20.i
           OS=Arabidopsis thaliana GN=T32B20.i PE=4 SV=1
          Length = 724

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 254 LTKIGASYTLQHVCYVPQLR*SVISVKQLADCGCQTLLRE 135
           ++K G S  L+ V Y+P LR ++IS+ Q  + GC   +R+
Sbjct: 222 VSKNGDSKLLEDVYYIPDLRSNIISLGQATEAGCDVRMRK 261