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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913110
Clone id YMU001_000026_F01
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATATTGGCAGAGAGAGAGGGAACACTACTTGCTGCTATGGATCTTGACTCTAAATGGATT
CAATCTGCAGGCAACCAACAGCAGTCACCAATCCAAGGGGAAAGTAACTAAACAACAAGA
ATCTTGAGCAGTCATGGGAGAAAGTTACATAGTAGTGCAATTCCAGACTGAGAGGCAGAA
ACTGAGGATGTATGGAAAGCTTTTCAATGTAGGAGGGAGATGGATACCCCTAGAGCTTAT
CTTCAGCATCTTGCCAGAAATCGGGTCCGAAAATAAGAAACCCCGACATATTTTAGGTGA
TTACGACAGCCCAAAGCGGGACATCAACAAGACTGTTTTTAGGACTGAATATGGATAGTA
CGAGTTTATAGTCATGTNATATGTTCTAACTGGCACACGATATCCCACTG
■■Homology search results ■■ -
sp_hit_id Q8VHQ2
Definition sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 OS=Mus musculus
Align length 60
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913110|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F01.
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 OS=Mus ...    32   1.3  
sp|O14512|SOCS7_HUMAN Suppressor of cytokine signaling 7 OS=Homo...    32   1.3  
sp|O35913|SO1A4_RAT Solute carrier organic anion transporter fam...    31   2.2  
sp|Q0AR24|GLMU_MARMM Bifunctional protein glmU OS=Maricaulis mar...    31   2.2  
sp|P53842|YN06_YEAST Putative uncharacterized protein YNL266W OS...    30   5.0  
sp|P28348|NIRA_EMENI Nitrogen assimilation transcription factor ...    30   5.0  
sp|Q74AZ0|SYL_GEOSL Leucyl-tRNA synthetase OS=Geobacter sulfurre...    29   6.5  
sp|Q6P2A1|PRDM9_DANRE Histone-lysine N-methyltransferase PRDM9 O...    29   6.5  
sp|Q6DC39|F152A_DANRE UPF0326 protein FAM152A OS=Danio rerio GN=...    29   6.5  
sp|Q5ZIV7|F152A_CHICK UPF0326 protein FAM152A OS=Gallus gallus G...    29   6.5  
sp|Q5N9N2|P2C09_ORYSJ Probable protein phosphatase 2C 9 OS=Oryza...    29   8.5  
sp|A7S1L6|FUCT1_NEMVE GDP-fucose transporter 1 OS=Nematostella v...    29   8.5  
sp|Q5XIT6|F152A_RAT UPF0326 protein FAM152A OS=Rattus norvegicus...    29   8.5  
sp|Q5R456|F152A_PONAB UPF0326 protein FAM152A OS=Pongo abelii GN...    29   8.5  
sp|A3QRX8|F152A_PIG UPF0326 protein FAM152A OS=Sus scrofa GN=FAM...    29   8.5  
sp|Q9D291|F152A_MOUSE UPF0326 protein FAM152A OS=Mus musculus GN...    29   8.5  
sp|Q9BSY9|F152A_HUMAN UPF0326 protein FAM152A OS=Homo sapiens GN...    29   8.5  

>sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 OS=Mus
           musculus GN=Socs7 PE=1 SV=1
          Length = 579

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
 Frame = -2

Query: 271 FGPDFWQDAEDKL*GYPSPSYIEKLSIHPQFLPLSLEL------------HYYVTFSHDC 128
           +GP  W+DAE KL G P  S++ + S  P+++ LSL              HY  TFS  C
Sbjct: 400 WGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYI-LSLSFRSQGITHHTRMEHYRGTFSLWC 458


>sp|O14512|SOCS7_HUMAN Suppressor of cytokine signaling 7 OS=Homo
           sapiens GN=SOCS7 PE=1 SV=2
          Length = 581

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
 Frame = -2

Query: 271 FGPDFWQDAEDKL*GYPSPSYIEKLSIHPQFLPLSLEL------------HYYVTFSHDC 128
           +GP  W+DAE KL G P  S++ + S  P+++ LSL              HY  TFS  C
Sbjct: 402 WGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYI-LSLSFRSQGITHHTRMEHYRGTFSLWC 460


>sp|O35913|SO1A4_RAT Solute carrier organic anion transporter family
           member 1A4 OS=Rattus norvegicus GN=Slco1a4 PE=2 SV=1
          Length = 661

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = -3

Query: 369 INSYYPYSVLKTVLLMSRFGLS*SPKICRGFLFSDPISGKMLKISSRGIHLPPTLKSFPY 190
           +   Y  S  + V LM  + L   P IC G+L    I  K      +  HL   L    Y
Sbjct: 342 LEQQYGKSTAEVVFLMGLYML---PPICLGYLIGGLIMKKFKVTVKKAAHLAFWLCLSEY 398

Query: 189 ILSFCLSVWNCTTM*LSPMT 130
           +LSF   V  C    ++ +T
Sbjct: 399 LLSFLSYVMTCDNFPVAGLT 418


>sp|Q0AR24|GLMU_MARMM Bifunctional protein glmU OS=Maricaulis maris
           (strain MCS10) GN=glmU PE=3 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 152 VVQFQTERQKLRMYGKLFNVGGRWIPLELIFSILPEIGSENKKPRHILGD 301
           +V+F+   +  R  G L N G    P EL+F +L E+G++N    + L D
Sbjct: 154 IVEFKDASEAERAVG-LVNSGVLAAPAELLFDLLGEVGNDNANGEYYLTD 202


>sp|P53842|YN06_YEAST Putative uncharacterized protein YNL266W
           OS=Saccharomyces cerevisiae GN=YNL266W PE=5 SV=1
          Length = 139

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 127 SRFLLFSYFPLGLVTAVGCL 68
           S FL+FS F LG +T +GCL
Sbjct: 61  SSFLIFSLFCLGFLTVIGCL 80


>sp|P28348|NIRA_EMENI Nitrogen assimilation transcription factor
           nirA OS=Emericella nidulans GN=nirA PE=4 SV=1
          Length = 892

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 27/92 (29%), Positives = 40/92 (43%)
 Frame = +1

Query: 22  TLLAAMDLDSKWIQSAGNQQQSPIQGESN*TTRILSSHGRKLHSSAIPD*EAETEDVWKA 201
           +++A  DL     QSAGNQ  +P  G S   T+ ++S      S  +      +    +A
Sbjct: 668 SVVATTDLSQPVSQSAGNQPANPSMGTSPNLTQPVASQYSSTPSGPV------SVSAMRA 721

Query: 202 FQCRREMDTPRAYLQHLARNRVRK*ETPTYFR 297
            Q        R++   LA N  R+ E PTY R
Sbjct: 722 VQ--------RSFSAQLAHNEARQPE-PTYLR 744


>sp|Q74AZ0|SYL_GEOSL Leucyl-tRNA synthetase OS=Geobacter
           sulfurreducens GN=leuS PE=3 SV=1
          Length = 824

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 236 LIFSILPEIGSENKKPRHILGDYDSPKRDINKTVFRT 346
           L+F +LP IGS  K     LGD     RD+ +TV +T
Sbjct: 638 LVFEVLPFIGSAGKPDPAALGD---GARDLRRTVHKT 671


>sp|Q6P2A1|PRDM9_DANRE Histone-lysine N-methyltransferase PRDM9
           OS=Danio rerio GN=prdm9 PE=2 SV=1
          Length = 853

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  CRQPTAVTNPRGK*LNNKNLEQSWEKVT**CNSRLRGRN*GCMESFS 206
           C +  AV  PRG+   NKNLE   +K++  C +        C +SFS
Sbjct: 480 CPKKVAVGRPRGRPPKNKNLEVEVQKISPICTN--------CEQSFS 518


>sp|Q6DC39|F152A_DANRE UPF0326 protein FAM152A OS=Danio rerio
           GN=fam152a PE=2 SV=1
          Length = 196

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 182 LRMYGKLFNVGGRWIPLELIFSILP----EIGSENK-KPRHILGDYDSPKRDINKTV 337
           + +YG+ F  GG   P   IF I P    E+G   K K   +LG  D  + D+ + V
Sbjct: 32  IEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIV 88


>sp|Q5ZIV7|F152A_CHICK UPF0326 protein FAM152A OS=Gallus gallus
           GN=FAM152A PE=2 SV=1
          Length = 193

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 182 LRMYGKLFNVGGRWIPLELIFSILP----EIGSENK-KPRHILGDYDSPKRDINKTV 337
           + +YG+ F  GG   P   IF I P    E+G   K K   +LG  D  + DI K V
Sbjct: 32  IEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIV 88
tr_hit_id Q27TW8
Definition tr|Q27TW8|Q27TW8_OROCE Reverse transcriptase (Fragment) OS=Orobanche cernua var. desertorum
Align length 26
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913110|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F01.
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q27TW8|Q27TW8_OROCE Reverse transcriptase (Fragment) OS=Oroba...    39   0.17 
tr|Q27TZ5|Q27TZ5_OROCE Reverse transcriptase (Fragment) OS=Oroba...    38   0.22 
tr|Q27TN7|Q27TN7_PHETU Reverse transcriptase (Fragment) OS=Pheli...    38   0.22 
tr|Q27TN5|Q27TN5_PHETU Reverse transcriptase (Fragment) OS=Pheli...    38   0.22 
tr|Q6L3S3|Q6L3S3_SOLDE Putative gag-pol polyprotein, identical O...    38   0.29 
tr|Q6L3S2|Q6L3S2_SOLDE Putative retrotransposon protein, identic...    38   0.29 
tr|Q27TS4|Q27TS4_OROBU Reverse transcriptase (Fragment) OS=Oroba...    38   0.29 
tr|Q56GE7|Q56GE7_PEPCA Reverse transcriptase (Fragment) OS=Peper...    37   0.38 
tr|Q27TV9|Q27TV9_OROOW Reverse transcriptase (Fragment) OS=Oroba...    37   0.38 
tr|Q27TN8|Q27TN8_PHETU Reverse transcriptase (Fragment) OS=Pheli...    37   0.38 
tr|Q27TR3|Q27TR3_ORORA Reverse transcriptase (Fragment) OS=Oroba...    37   0.49 
tr|Q27TP4|Q27TP4_PHETU Reverse transcriptase (Fragment) OS=Pheli...    37   0.49 
tr|Q27TP0|Q27TP0_PHETU Reverse transcriptase (Fragment) OS=Pheli...    37   0.49 
tr|Q27TN9|Q27TN9_PHETU Reverse transcriptase (Fragment) OS=Pheli...    37   0.49 
tr|Q27TN0|Q27TN0_PHETU Reverse transcriptase (Fragment) OS=Pheli...    37   0.49 
tr|A5ALW7|A5ALW7_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|Q27TY5|Q27TY5_OROCE Reverse transcriptase (Fragment) OS=Oroba...    37   0.65 
tr|A5BRB4|A5BRB4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.65 
tr|A5BBP7|A5BBP7_VITVI Putative uncharacterized protein OS=Vitis...    37   0.65 
tr|Q56GE9|Q56GE9_PEPCA Reverse transcriptase (Fragment) OS=Peper...    36   0.84 
tr|Q56GE8|Q56GE8_PEPCA Reverse transcriptase (Fragment) OS=Peper...    36   0.84 
tr|Q56GE4|Q56GE4_PEPCA Reverse transcriptase (Fragment) OS=Peper...    36   0.84 
tr|Q27TV7|Q27TV7_OROOW Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TV5|Q27TV5_OROOW Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TV2|Q27TV2_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TU8|Q27TU8_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TU1|Q27TU1_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TT8|Q27TT8_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TT6|Q27TT6_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 
tr|Q27TT4|Q27TT4_OROCR Reverse transcriptase (Fragment) OS=Oroba...    36   0.84 

>tr|Q27TW8|Q27TW8_OROCE Reverse transcriptase (Fragment)
           OS=Orobanche cernua var. desertorum PE=4 SV=1
          Length = 143

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 320 DINKTVFRTEYG*YEFIVMXYVLTGT 397
           D++KT FRT YG YEF+VM + LT T
Sbjct: 54  DVSKTAFRTRYGHYEFVVMPFGLTNT 79


>tr|Q27TZ5|Q27TZ5_OROCE Reverse transcriptase (Fragment)
           OS=Orobanche cernua var. australiana PE=4 SV=1
          Length = 143

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 320 DINKTVFRTEYG*YEFIVMXYVLT 391
           D++KTVFRT YG YEF+VM + LT
Sbjct: 54  DVSKTVFRTRYGHYEFVVMPFGLT 77


>tr|Q27TN7|Q27TN7_PHETU Reverse transcriptase (Fragment)
           OS=Phelipanche tunetana PE=4 SV=1
          Length = 143

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 314 KRDINKTVFRTEYG*YEFIVMXYVLT 391
           K DI+KT FRT YG YEF+VM + LT
Sbjct: 52  KGDISKTAFRTRYGHYEFVVMPFGLT 77


>tr|Q27TN5|Q27TN5_PHETU Reverse transcriptase (Fragment)
           OS=Phelipanche tunetana PE=4 SV=1
          Length = 143

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 314 KRDINKTVFRTEYG*YEFIVMXYVLT 391
           K DI+KT FRT YG YEF+VM + LT
Sbjct: 52  KGDISKTAFRTRYGHYEFVVMPFGLT 77


>tr|Q6L3S3|Q6L3S3_SOLDE Putative gag-pol polyprotein, identical
           OS=Solanum demissum GN=SDM1_41t00016 PE=4 SV=1
          Length = 1515

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 314 KRDINKTVFRTEYG*YEFIVMXYVLT 391
           +RDI KT FRT YG YEF+VM + LT
Sbjct: 760 ERDIPKTAFRTRYGHYEFLVMSFGLT 785


>tr|Q6L3S2|Q6L3S2_SOLDE Putative retrotransposon protein, identical
           OS=Solanum demissum GN=SDM1_41t00017 PE=4 SV=1
          Length = 1602

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 314 KRDINKTVFRTEYG*YEFIVMXYVLT 391
           +RDI KT FRT YG YEF+VM + LT
Sbjct: 766 ERDIPKTAFRTRYGHYEFLVMSFGLT 791


>tr|Q27TS4|Q27TS4_OROBU Reverse transcriptase (Fragment)
           OS=Orobanche bungeana PE=4 SV=1
          Length = 143

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 320 DINKTVFRTEYG*YEFIVMXYVLT 391
           DI+KT FRT YG YEF+VM + LT
Sbjct: 54  DISKTAFRTRYGHYEFVVMPFCLT 77


>tr|Q56GE7|Q56GE7_PEPCA Reverse transcriptase (Fragment)
           OS=Peperomia caperata GN=RT PE=4 SV=1
          Length = 116

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 317 RDINKTVFRTEYG*YEFIVMXYVLT 391
           +DI+KT FRT YG YEF+VM + LT
Sbjct: 57  KDISKTAFRTRYGHYEFLVMPFGLT 81


>tr|Q27TV9|Q27TV9_OROOW Reverse transcriptase (Fragment)
           OS=Orobanche owerinii PE=4 SV=1
          Length = 144

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 320 DINKTVFRTEYG*YEFIVMXYVLT 391
           DI+KT FRT YG YEFIVM + LT
Sbjct: 54  DISKTAFRTRYGHYEFIVMPFGLT 77


>tr|Q27TN8|Q27TN8_PHETU Reverse transcriptase (Fragment)
           OS=Phelipanche tunetana PE=4 SV=1
          Length = 143

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 314 KRDINKTVFRTEYG*YEFIVMXYVLT 391
           K DI KT FRT YG YEF+VM + LT
Sbjct: 52  KGDIPKTAFRTRYGHYEFVVMPFKLT 77