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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913117
Clone id YMU001_000026_F08
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCGTGTCGGCCATACAATTCCAAACATCCCCACTCACATCAACAGTTCTAAAGAACAAT
TTTGGCACCAGGTTTACACTGTTTTACACAAATCAAATGCAATTCTTCTTGTTTTGCATC
CTGTAATCTGGTTTGCAGGGGAGAGGAATCCCATTCACAGCTCCCATGCTCTACTACCAA
TTGCATATGCGTTCCTGATTGAATGGGTACCATACATAGGACACCCGATCACAAGACCAC
AGCTATGTACCATCAAAACTCACTTCCCATCAACCGATATTAAGCAAGCATCACAGTGAC
AAAACCACACCCAAAAGAACAGAAATTTGCACAAATCAAAAAATTGTGTTCAACCTTCAG
CATGGCTCCAAAAACCTAACTTGACTTGTATTCGACACTTCCTGGCTTTGACACATGAGC
AAGGTAACCGACAAGGACTCACACTAACCACAGTATGTACATGACGTTACATACCCTAGC
AAGGTAACCTTGCTCTGGTATTAATCCCCACGGTCCTCCAAGGAGGAACC
■■Homology search results ■■ -
sp_hit_id P23337
Definition sp|P23337|GYS1_YEAST Glycogen [starch] synthase isoform 1 OS=Saccharomyces cerevisiae
Align length 60
Score (bit) 37.0
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913117|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F08.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23337|GYS1_YEAST Glycogen [starch] synthase isoform 1 OS=Sac...    37   0.059
sp|B0T316|NADD_CAUSK Probable nicotinate-nucleotide adenylyltran...    32   1.9  
sp|Q9KSX8|MNMA_VIBCH tRNA-specific 2-thiouridylase mnmA OS=Vibri...    32   1.9  
sp|A5F2F2|MNMA_VIBC3 tRNA-specific 2-thiouridylase mnmA OS=Vibri...    32   1.9  
sp|Q9R158|AD26A_MOUSE ADAM 26A OS=Mus musculus GN=Adam26a PE=2 SV=1    32   1.9  
sp|Q861X8|AMELY_PANTR Amelogenin, Y isoform (Fragment) OS=Pan tr...    32   2.5  
sp|Q99218|AMELY_HUMAN Amelogenin, Y isoform OS=Homo sapiens GN=A...    32   2.5  
sp|Q3YRV1|Y518_EHRCJ Maf-like protein Ecaj_0518 OS=Ehrlichia can...    31   3.2  
sp|Q28067|KCMB1_BOVIN Calcium-activated potassium channel subuni...    31   3.2  
sp|P27472|GYS2_YEAST Glycogen [starch] synthase isoform 2 OS=Sac...    31   4.2  
sp|Q48334|BAC3_HALVA Bacterial rhodopsin CSR3 OS=Haloarcula vall...    30   5.5  
sp|Q0IIY7|AJAP1_XENTR Adherens junction-associated protein 1 OS=...    30   5.5  
sp|Q1LY10|FSD1_DANRE Fibronectin type III and SPRY domain-contai...    30   7.2  
sp|Q28266|KCMB1_CANFA Calcium-activated potassium channel subuni...    30   9.4  

>sp|P23337|GYS1_YEAST Glycogen [starch] synthase isoform 1
           OS=Saccharomyces cerevisiae GN=GSY1 PE=1 SV=3
          Length = 708

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 87  HKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTIKTHF 266
           H++N  +L+ + V+WF GE + + SSHA++        EW+  +  P+ R +   + T F
Sbjct: 135 HETNDAILLGYVVVWFLGEVSKLDSSHAII----GHFHEWLAGVALPLCRKKRIDVVTIF 190


>sp|B0T316|NADD_CAUSK Probable nicotinate-nucleotide
           adenylyltransferase OS=Caulobacter sp. (strain K31)
           GN=nadD PE=3 SV=1
          Length = 189

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 42  NSSKEQFWHQVYTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIA 185
           N + E   H   T +H+     L L  VIW    +NP+ SSH   P+A
Sbjct: 11  NPAHEGHAHVAETAMHR-----LKLDKVIWLVSPQNPLKSSHETRPLA 53


>sp|Q9KSX8|MNMA_VIBCH tRNA-specific 2-thiouridylase mnmA OS=Vibrio
           cholerae GN=mnmA PE=3 SV=1
          Length = 372

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +3

Query: 39  INSSKEQFWHQVYTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYI 218
           +  S EQ W+     L K N ++ V        G  +P+  SH L+    A  + WV   
Sbjct: 259 MKESSEQPWYVADKDL-KRNVLIAV-------QGADHPLLKSHGLV----AAQLHWVDRT 306

Query: 219 GHPITRPQLCTIKTHFPSTDI 281
             PIT P  C++KT +  +DI
Sbjct: 307 --PITEPVRCSVKTRYRQSDI 325


>sp|A5F2F2|MNMA_VIBC3 tRNA-specific 2-thiouridylase mnmA OS=Vibrio
           cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
           O395) GN=mnmA PE=3 SV=1
          Length = 372

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +3

Query: 39  INSSKEQFWHQVYTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYI 218
           +  S EQ W+     L K N ++ V        G  +P+  SH L+    A  + WV   
Sbjct: 259 MKESSEQPWYVADKDL-KRNVLIAV-------QGADHPLLKSHGLV----AAQLHWVDRT 306

Query: 219 GHPITRPQLCTIKTHFPSTDI 281
             PIT P  C++KT +  +DI
Sbjct: 307 --PITEPVRCSVKTRYRQSDI 325


>sp|Q9R158|AD26A_MOUSE ADAM 26A OS=Mus musculus GN=Adam26a PE=2 SV=1
          Length = 697

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 59  ILAPGLHCFTQIKCNSSCFASCNLVCRGEESHSQLP--CSTTNCICVPD 199
           +L PG  C   + C +  F     VCR E++   LP  C+ T+  C  D
Sbjct: 425 VLKPGAQCAFGLCCKNCQFLKTGTVCREEKNECDLPEWCNGTSAECPGD 473


>sp|Q861X8|AMELY_PANTR Amelogenin, Y isoform (Fragment) OS=Pan
           troglodytes GN=AMELY PE=3 SV=1
          Length = 203

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 21  PNIPTHINSSKEQFWHQVYTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLI 200
           P  P +IN S E    Q   V    + I LVL P+ W+     P +SS+   P+      
Sbjct: 23  PGHPGYINFSYENSHSQAINV----DRIALVLTPLKWYQSMIRPPYSSYGYEPMGGWLHH 78

Query: 201 EWVPYIG--HPITRPQLCTIKTH 263
           + +P +   HP+T     T+++H
Sbjct: 79  QIIPVVSQQHPLTH----TLQSH 97


>sp|Q99218|AMELY_HUMAN Amelogenin, Y isoform OS=Homo sapiens
           GN=AMELY PE=2 SV=2
          Length = 206

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 21  PNIPTHINSSKEQFWHQVYTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLI 200
           P  P +IN S E    Q   V    + I LVL P+ W+     P +SS+   P+      
Sbjct: 23  PGHPGYINFSYENSHSQAINV----DRIALVLTPLKWYQSMIRPPYSSYGYEPMGGWLHH 78

Query: 201 EWVPYIG--HPITRPQLCTIKTH 263
           + +P +   HP+T     T+++H
Sbjct: 79  QIIPVVSQQHPLTH----TLQSH 97


>sp|Q3YRV1|Y518_EHRCJ Maf-like protein Ecaj_0518 OS=Ehrlichia canis
           (strain Jake) GN=Ecaj_0518 PE=3 SV=1
          Length = 192

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 307 WFCHCDACLISVD-GK*VLMVH-SCGLVIGCPMYGTHSIRNAY 185
           W+    AC I  + GK VL ++ S   +IG P+Y T+SI N Y
Sbjct: 147 WYGKSGACSIQTNAGKFVLSINGSYSSIIGLPLYETYSILNRY 189


>sp|Q28067|KCMB1_BOVIN Calcium-activated potassium channel subunit
           beta-1 OS=Bos taurus GN=KCNMB1 PE=1 SV=3
          Length = 191

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 208 YHT*DTRSQDH--SYVPSKLTSHQ 273
           YHT DTR Q+H  SY+PS L ++Q
Sbjct: 91  YHTEDTRDQNHQCSYIPSSLDNYQ 114


>sp|P27472|GYS2_YEAST Glycogen [starch] synthase isoform 2
           OS=Saccharomyces cerevisiae GN=GSY2 PE=1 SV=3
          Length = 705

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 90  KSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTIKTHF 266
           ++N  +L+ + V WF GE   + S HA++    A   EW+  +  P+ R +   + T F
Sbjct: 136 ETNDAILLGYTVAWFLGEVAHLDSQHAIV----AHFHEWLAGVALPLCRKRRIDVVTIF 190
tr_hit_id B5VI42
Definition tr|B5VI42|B5VI42_YEAS6 YFR015Cp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631)
Align length 60
Score (bit) 37.0
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913117|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F08.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5VI42|B5VI42_YEAS6 YFR015Cp-like protein OS=Saccharomyces ce...    37   0.62 
tr|B3LUM4|B3LUM4_YEAS1 Glycogen synthase OS=Saccharomyces cerevi...    37   0.62 
tr|A7A253|A7A253_YEAS7 UDP-glucose-starch glucosyltransferase OS...    37   0.62 
tr|A6S1L2|A6S1L2_BOTFB Putative uncharacterized protein OS=Botry...    35   1.8  
tr|A7F6R2|A7F6R2_SCLS1 Putative uncharacterized protein OS=Scler...    34   4.0  
tr|Q7U0Q6|Q7U0Q6_MYCBO Putative uncharacterized protein Mb1102 O...    33   9.0  
tr|O53421|O53421_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A5U1B9|A5U1B9_MYCTA Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A1KHL1|A1KHL1_MYCBP Putative uncharacterized protein BCG_1131...    33   9.0  
tr|Q7D8W4|Q7D8W4_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A5WL95|A5WL95_MYCTF Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A4KG08|A4KG08_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A2VGZ8|A2VGZ8_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|A1QQE6|A1QQE6_MYCTF Putative uncharacterized protein OS=Mycob...    33   9.0  
tr|B4L9N1|B4L9N1_DROMO GI16885 OS=Drosophila mojavensis GN=GI168...    33   9.0  
tr|A2FRC4|A2FRC4_TRIVA Putative uncharacterized protein OS=Trich...    33   9.0  
tr|A0DRN2|A0DRN2_PARTE Chromosome undetermined scaffold_60, whol...    33   9.0  

>tr|B5VI42|B5VI42_YEAS6 YFR015Cp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_60780 PE=4 SV=1
          Length = 708

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 87  HKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTIKTHF 266
           H++N  +L+ + V+WF GE + + SSHA++        EW+  +  P+ R +   + T F
Sbjct: 135 HETNDAILLGYVVVWFLGEVSKLDSSHAII----GHFHEWLAGVALPLCRKKRIDVVTIF 190


>tr|B3LUM4|B3LUM4_YEAS1 Glycogen synthase OS=Saccharomyces
           cerevisiae (strain RM11-1a) GN=SCRG_05562 PE=4 SV=1
          Length = 708

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 87  HKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTIKTHF 266
           H++N  +L+ + V+WF GE + + SSHA++        EW+  +  P+ R +   + T F
Sbjct: 135 HETNDAILLGYVVVWFLGEVSKLDSSHAII----GHFHEWLAGVALPLCRKKRIDVVTIF 190


>tr|A7A253|A7A253_YEAS7 UDP-glucose-starch glucosyltransferase
           OS=Saccharomyces cerevisiae (strain YJM789) GN=GSY1 PE=4
           SV=1
          Length = 708

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 87  HKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTIKTHF 266
           H++N  +L+ + V+WF GE + + SSHA++        EW+  +  P+ R +   + T F
Sbjct: 135 HETNDAILLGYVVVWFLGEVSKLDSSHAII----GHFHEWLAGVALPLCRKKRIDVVTIF 190


>tr|A6S1L2|A6S1L2_BOTFB Putative uncharacterized protein
            OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_06709
            PE=4 SV=1
          Length = 2239

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
 Frame = +3

Query: 75   YTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTI 254
            +    +SN++  V H V+ F  E  PI   HAL      + + W+   G  + R QL  +
Sbjct: 860  FDTTEQSNSV--VQHSVVKFVVESQPISFHHAL-----HYTLSWLIECGKSMPREQLIQL 912

Query: 255  KTHFPSTDIKQASQ*--------QNHTQKNRNLHKSKNCVQPSAWL--QKPNLTCIRHFL 404
             + F + ++ Q  +         Q ++ ++  +      ++  AWL   K N+  +R+ +
Sbjct: 913  LS-FTTQELLQKPKPMGQRTMPSQEYSPEDHLMAAFDYPLRVCAWLAQMKANMW-VRNGM 970

Query: 405  ALTHEQGNRQGLTLTTV 455
            +L H+QG  +G+TL  V
Sbjct: 971  SLRHQQGTYRGVTLRDV 987


>tr|A7F6R2|A7F6R2_SCLS1 Putative uncharacterized protein
            OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
            Ss-1) GN=SS1G_13291 PE=4 SV=1
          Length = 1412

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
 Frame = +3

Query: 75   YTVLHKSNAILLVLHPVIWFAGERNPIHSSHALLPIAYAFLIEWVPYIGHPITRPQLCTI 254
            +    +SN++  + H V+ F  E  PI   HAL      + + W+   G  + R QL  +
Sbjct: 850  FDTTEQSNSV--IQHSVVKFVVESQPISFHHAL-----HYTLSWLIECGKGMPRQQLIRL 902

Query: 255  KTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPS--------AWL--QKPNLTCIRHFL 404
             + F + ++ Q  +          ++  ++ +  +        AWL   K N+  +R+ +
Sbjct: 903  LS-FTTQELLQKPKFMGQRLMPSQVYSPEDHLMAAFDYPLRVCAWLAQMKANMW-VRNGM 960

Query: 405  ALTHEQGNRQGLTLTTV 455
            +L H+QG  +G+TL  V
Sbjct: 961  SLRHQQGTYRGVTLRDV 977


>tr|Q7U0Q6|Q7U0Q6_MYCBO Putative uncharacterized protein Mb1102
           OS=Mycobacterium bovis GN=Mb1102 PE=4 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 210 PYIGHPITRPQLCTIKTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPSAWLQKPNLTC 389
           P +G  ITR       T F   D+++ ++   HT+  R L K+ + V P A  Q P  T 
Sbjct: 127 PPLGQAITRLDALANATDFKINDVRELARKHPHTRGLRQLDKALDLVDPGA--QSPKETW 184

Query: 390 IRHFL 404
           +R  L
Sbjct: 185 LRLLL 189


>tr|O53421|O53421_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis GN=Rv1073 PE=4 SV=3
          Length = 283

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 210 PYIGHPITRPQLCTIKTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPSAWLQKPNLTC 389
           P +G  ITR       T F   D+++ ++   HT+  R L K+ + V P A  Q P  T 
Sbjct: 127 PPLGQAITRLDALANATDFKINDVRELARKHPHTRGLRQLDKALDLVDPGA--QSPKETW 184

Query: 390 IRHFL 404
           +R  L
Sbjct: 185 LRLLL 189


>tr|A5U1B9|A5U1B9_MYCTA Putative uncharacterized protein
           OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=MRA_1083 PE=4 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 210 PYIGHPITRPQLCTIKTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPSAWLQKPNLTC 389
           P +G  ITR       T F   D+++ ++   HT+  R L K+ + V P A  Q P  T 
Sbjct: 127 PPLGQAITRLDALANATDFKINDVRELARKHPHTRGLRQLDKALDLVDPGA--QSPKETW 184

Query: 390 IRHFL 404
           +R  L
Sbjct: 185 LRLLL 189


>tr|A1KHL1|A1KHL1_MYCBP Putative uncharacterized protein BCG_1131
           OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
           GN=BCG_1131 PE=4 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 210 PYIGHPITRPQLCTIKTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPSAWLQKPNLTC 389
           P +G  ITR       T F   D+++ ++   HT+  R L K+ + V P A  Q P  T 
Sbjct: 127 PPLGQAITRLDALANATDFKINDVRELARKHPHTRGLRQLDKALDLVDPGA--QSPKETW 184

Query: 390 IRHFL 404
           +R  L
Sbjct: 185 LRLLL 189


>tr|Q7D8W4|Q7D8W4_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis GN=MT1103 PE=4 SV=1
          Length = 286

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 210 PYIGHPITRPQLCTIKTHFPSTDIKQASQ*QNHTQKNRNLHKSKNCVQPSAWLQKPNLTC 389
           P +G  ITR       T F   D+++ ++   HT+  R L K+ + V P A  Q P  T 
Sbjct: 130 PPLGQAITRLDALANATDFKINDVRELARKHPHTRGLRQLDKALDLVDPGA--QSPKETW 187

Query: 390 IRHFL 404
           +R  L
Sbjct: 188 LRLLL 192