BP913119
Clone id YMU001_000026_F10
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTATTCGCGTATTTATCCTAGATGAATTCAATGTGGCAGGCAGTCCGTTGTCCATCTCTA
TGAGCACCTGTTTTGCTCCAAACCTCTCTTCTCCAACCCAGAATTGAAAAAGTTGGTGCC
CACCCTTTGATCCATTACACAGACGAAAACTCTCTTCATCTAAGTTGTCTTTCACAGAAA
CTTCCGCAATGATAGTGGCTGAATCATTCTCATGCATTTCCCTATCTTCATCCACATGGT
TACAAGTACCATTTCCTTCCTGCCCCCCATTTTCCGCTCGTTCCACAGAAGAAACAATCG
■■Homology search results ■■ -
sp_hit_id Q9HM69
Definition sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium salinarium
Align length 92
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913119|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F10.
(300 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium s... 32 1.3
sp|A2A791|ZMYM4_MOUSE Zinc finger MYM-type protein 4 OS=Mus musc... 31 1.7
sp|Q13029|PRDM2_HUMAN PR domain zinc finger protein 2 OS=Homo sa... 30 3.8
sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TU... 29 6.5
sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG... 29 6.5
sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis GN=... 29 6.5
sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus GN... 29 6.5
sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tu... 29 6.5
sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TU... 29 6.5
sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris G... 29 6.5
sp|Q0VCD2|TBG1_BOVIN Tubulin gamma-1 chain OS=Bos taurus GN=TUBG... 29 6.5
sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus muscu... 29 6.5
sp|Q3SZI1|TINAG_BOVIN Tubulointerstitial nephritis antigen OS=Bo... 29 8.4
sp|P44408|REC2_HAEIN Recombination protein 2 OS=Haemophilus infl... 29 8.4
sp|Q9QUM0|ITA2B_MOUSE Integrin alpha-IIb OS=Mus musculus GN=Itga... 29 8.4
sp|Q7Y180|AN322_ORYSJ Acidic leucine-rich nuclear phosphoprotein... 29 8.4

>sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium
salinarium GN=csg PE=1 SV=2
Length = 852

Score = 31.6 bits (70), Expect = 1.3
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Frame = -3

Query: 253 NGTCNHVDEDREMHENDS-----ATIIAEVSVK----DNLDEESFRLCNGSKGGHQLFQF 101
NGT N +D ++ D+ T+ E S++ D +EE L +G KGG +
Sbjct: 438 NGTANEGTDDVVLYARDNNDFELVTVDGEKSIEVDSDDTFEEEDITLSDGDKGGDDILGL 497

Query: 100 WVGEERFG--AKQVLIEMDNGLPATLNSSRIN 11
G R G AK + G+ +++S N
Sbjct: 498 -PGTYRLGIIAKSDAVNSSGGVKDNIDTSDFN 528


>sp|A2A791|ZMYM4_MOUSE Zinc finger MYM-type protein 4 OS=Mus
musculus GN=Zmym4 PE=1 SV=1
Length = 1549

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3

Query: 27 FNVAGSPLSISMSTCFAPNLSSPTQN 104
F+V+GSPL+ ++T F P+L+SP N
Sbjct: 301 FSVSGSPLAPQLTTGFQPSLASPGMN 326


>sp|Q13029|PRDM2_HUMAN PR domain zinc finger protein 2 OS=Homo sapiens
GN=PRDM2 PE=1 SV=3
Length = 1718

Score = 30.0 bits (66), Expect = 3.8
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +3

Query: 42 SPLSISMSTCFAPNLSSPTQN*KSWCPPFDPLHXXXXXXXXXXFTETSAMIVAESFSCIS 221
SPLS + + P LS S PP +PL + +S+ + SFS S
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSS 1068

Query: 222 LSSSTWLQVPFPSCPPFSARST 287
SSS PS PP SA S+
Sbjct: 1069 SSSS-------PSPPPLSAISS 1083


>sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2
PE=1 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2
PE=2 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis
GN=tubg1 PE=2 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus
GN=Tubg1 PE=2 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1
PE=1 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1
PE=1 SV=2
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris
GN=TUBG1 PE=2 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
+E+GG GN + + ++HE+ I E D+L E F LC+ GG
Sbjct: 94 SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


tr_hit_id B4JDK5
Definition tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi
Align length 63
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913119|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F10.
(300 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi GN=GH1053... 35 1.8
tr|Q29C04|Q29C04_DROPS GA19934 OS=Drosophila pseudoobscura pseud... 34 4.1
tr|Q7RCG7|Q7RCG7_PLAYO Putative uncharacterized protein PY05815 ... 33 5.4
tr|Q5A0Z8|Q5A0Z8_CANAL Potential spliceosomal U5 snRNP RNA helic... 33 7.0

>tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi GN=GH10539
PE=4 SV=1
Length = 640

Score = 35.0 bits (79), Expect = 1.8
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Frame = +1

Query: 124 PLIHYTDENSLHLSCLSQKLPQ**WLNHSHAFPYLHPHGYKYHFLPAPH-------FPLV 282
P H ++ LH L P H H P+ HPH + YH PH P
Sbjct: 289 PHSHTHSQSQLHSHSLPHSHPH----VHPHQHPHSHPHSHHYHAHDVPHSLASGGGIPAT 344

Query: 283 PQK 291
PQK
Sbjct: 345 PQK 347


>tr|Q29C04|Q29C04_DROPS GA19934 OS=Drosophila pseudoobscura
pseudoobscura GN=GA19934 PE=4 SV=2
Length = 669

Score = 33.9 bits (76), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1

Query: 136 YTDENSLHLSCLSQKLPQ**WLNHSHAFPYLHPHGYKYH 252
Y+ E HL L Q L +HSH+ P+ HPH + +H
Sbjct: 35 YSQEAKTHLEQLQQTLTHLDHHSHSHSHPHPHPHHHPHH 73


>tr|Q7RCG7|Q7RCG7_PLAYO Putative uncharacterized protein PY05815
OS=Plasmodium yoelii yoelii GN=PY05815 PE=4 SV=1
Length = 1012

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -3

Query: 295 VSSVERAENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKG 122
V + E AENG + GNG D + +++D+ I V V DN DE++ N S G
Sbjct: 749 VGNAENAENGEKVGNGD----SADNDDNDDDAFIINENVDVHDNADEDN-EYANPSNG 801


>tr|Q5A0Z8|Q5A0Z8_CANAL Potential spliceosomal U5 snRNP RNA helicase
OS=Candida albicans GN=BRR2 PE=4 SV=1
Length = 1987

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3

Query: 292 SSVERAENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEES 149
+S+E A+ Q+GNG V D +++ I AE+ V+D D+E+
Sbjct: 128 NSIESAKQNHQQGNGDDEFVAIDFNSSDDEEQAIEAEIEVEDESDKET 175