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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913119
Clone id YMU001_000026_F10
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTATTCGCGTATTTATCCTAGATGAATTCAATGTGGCAGGCAGTCCGTTGTCCATCTCTA
TGAGCACCTGTTTTGCTCCAAACCTCTCTTCTCCAACCCAGAATTGAAAAAGTTGGTGCC
CACCCTTTGATCCATTACACAGACGAAAACTCTCTTCATCTAAGTTGTCTTTCACAGAAA
CTTCCGCAATGATAGTGGCTGAATCATTCTCATGCATTTCCCTATCTTCATCCACATGGT
TACAAGTACCATTTCCTTCCTGCCCCCCATTTTCCGCTCGTTCCACAGAAGAAACAATCG
■■Homology search results ■■ -
sp_hit_id Q9HM69
Definition sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium salinarium
Align length 92
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913119|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F10.
         (300 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium s...    32   1.3  
sp|A2A791|ZMYM4_MOUSE Zinc finger MYM-type protein 4 OS=Mus musc...    31   1.7  
sp|Q13029|PRDM2_HUMAN PR domain zinc finger protein 2 OS=Homo sa...    30   3.8  
sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TU...    29   6.5  
sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG...    29   6.5  
sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis GN=...    29   6.5  
sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus GN...    29   6.5  
sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tu...    29   6.5  
sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TU...    29   6.5  
sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris G...    29   6.5  
sp|Q0VCD2|TBG1_BOVIN Tubulin gamma-1 chain OS=Bos taurus GN=TUBG...    29   6.5  
sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus muscu...    29   6.5  
sp|Q3SZI1|TINAG_BOVIN Tubulointerstitial nephritis antigen OS=Bo...    29   8.4  
sp|P44408|REC2_HAEIN Recombination protein 2 OS=Haemophilus infl...    29   8.4  
sp|Q9QUM0|ITA2B_MOUSE Integrin alpha-IIb OS=Mus musculus GN=Itga...    29   8.4  
sp|Q7Y180|AN322_ORYSJ Acidic leucine-rich nuclear phosphoprotein...    29   8.4  

>sp|Q9HM69|CSG_HALSA Cell surface glycoprotein OS=Halobacterium
           salinarium GN=csg PE=1 SV=2
          Length = 852

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
 Frame = -3

Query: 253 NGTCNHVDEDREMHENDS-----ATIIAEVSVK----DNLDEESFRLCNGSKGGHQLFQF 101
           NGT N   +D  ++  D+      T+  E S++    D  +EE   L +G KGG  +   
Sbjct: 438 NGTANEGTDDVVLYARDNNDFELVTVDGEKSIEVDSDDTFEEEDITLSDGDKGGDDILGL 497

Query: 100 WVGEERFG--AKQVLIEMDNGLPATLNSSRIN 11
             G  R G  AK   +    G+   +++S  N
Sbjct: 498 -PGTYRLGIIAKSDAVNSSGGVKDNIDTSDFN 528


>sp|A2A791|ZMYM4_MOUSE Zinc finger MYM-type protein 4 OS=Mus
           musculus GN=Zmym4 PE=1 SV=1
          Length = 1549

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 27  FNVAGSPLSISMSTCFAPNLSSPTQN 104
           F+V+GSPL+  ++T F P+L+SP  N
Sbjct: 301 FSVSGSPLAPQLTTGFQPSLASPGMN 326


>sp|Q13029|PRDM2_HUMAN PR domain zinc finger protein 2 OS=Homo sapiens
            GN=PRDM2 PE=1 SV=3
          Length = 1718

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 27/82 (32%), Positives = 35/82 (42%)
 Frame = +3

Query: 42   SPLSISMSTCFAPNLSSPTQN*KSWCPPFDPLHXXXXXXXXXXFTETSAMIVAESFSCIS 221
            SPLS + +    P LS       S  PP +PL            + +S+   + SFS  S
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSS 1068

Query: 222  LSSSTWLQVPFPSCPPFSARST 287
             SSS       PS PP SA S+
Sbjct: 1069 SSSS-------PSPPPLSAISS 1083


>sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2
           PE=1 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2
           PE=2 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis
           GN=tubg1 PE=2 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus
           GN=Tubg1 PE=2 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1
           PE=1 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1
           PE=1 SV=2
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144


>sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris
           GN=TUBG1 PE=2 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 277 AENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKGG 119
           +E+GG  GN   +   +  ++HE+    I  E    D+L  E F LC+   GG
Sbjct: 94  SEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSL--EGFVLCHSIAGG 144
tr_hit_id B4JDK5
Definition tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi
Align length 63
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913119|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_F10.
         (300 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi GN=GH1053...    35   1.8  
tr|Q29C04|Q29C04_DROPS GA19934 OS=Drosophila pseudoobscura pseud...    34   4.1  
tr|Q7RCG7|Q7RCG7_PLAYO Putative uncharacterized protein PY05815 ...    33   5.4  
tr|Q5A0Z8|Q5A0Z8_CANAL Potential spliceosomal U5 snRNP RNA helic...    33   7.0  

>tr|B4JDK5|B4JDK5_DROGR GH10539 OS=Drosophila grimshawi GN=GH10539
           PE=4 SV=1
          Length = 640

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
 Frame = +1

Query: 124 PLIHYTDENSLHLSCLSQKLPQ**WLNHSHAFPYLHPHGYKYHFLPAPH-------FPLV 282
           P  H   ++ LH   L    P      H H  P+ HPH + YH    PH        P  
Sbjct: 289 PHSHTHSQSQLHSHSLPHSHPH----VHPHQHPHSHPHSHHYHAHDVPHSLASGGGIPAT 344

Query: 283 PQK 291
           PQK
Sbjct: 345 PQK 347


>tr|Q29C04|Q29C04_DROPS GA19934 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA19934 PE=4 SV=2
          Length = 669

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 136 YTDENSLHLSCLSQKLPQ**WLNHSHAFPYLHPHGYKYH 252
           Y+ E   HL  L Q L      +HSH+ P+ HPH + +H
Sbjct: 35  YSQEAKTHLEQLQQTLTHLDHHSHSHSHPHPHPHHHPHH 73


>tr|Q7RCG7|Q7RCG7_PLAYO Putative uncharacterized protein PY05815
           OS=Plasmodium yoelii yoelii GN=PY05815 PE=4 SV=1
          Length = 1012

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -3

Query: 295 VSSVERAENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEESFRLCNGSKG 122
           V + E AENG + GNG       D + +++D+  I   V V DN DE++    N S G
Sbjct: 749 VGNAENAENGEKVGNGD----SADNDDNDDDAFIINENVDVHDNADEDN-EYANPSNG 801


>tr|Q5A0Z8|Q5A0Z8_CANAL Potential spliceosomal U5 snRNP RNA helicase
           OS=Candida albicans GN=BRR2 PE=4 SV=1
          Length = 1987

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 292 SSVERAENGGQEGNGTCNHVDEDREMHENDSATIIAEVSVKDNLDEES 149
           +S+E A+   Q+GNG    V  D    +++   I AE+ V+D  D+E+
Sbjct: 128 NSIESAKQNHQQGNGDDEFVAIDFNSSDDEEQAIEAEIEVEDESDKET 175