BP913126
Clone id YMU001_000026_G05
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTTTTTTCACAAAGTTCATGAGGTGGCATTATAGGTCACAGAAGT
GACTGCAAAACTGACAATTTTAACAGTCATCACCCACATCTTCTTTCTGGAAAATGTTAA
TAGAATCTGCATTTAGGTGTAAATAATGCAAACCAACACCCCTTGAACCTTATATAAACA
TGCCAATTACAAGGTTAGCATCTGAGCCCCATTACCCCCATTGCCAAGTACTGTTGCGAC
GCCGAGTTGCCCAACTTTGAAGTTAATAAAGCTGAGCTGTTAAAAATAAGCACAGAGAGT
AGGTGGCGCTGCAAGCAAGTCTAAACTGGCTTCCATCAACCCATATTGTTGAATTAGCGC
TTTCTACCACCACGCTCTCTAAGAGCTAAGGTTAGTGTTTCGCCTGGTCCCACATTGTAG
TGCGCCAATGAAAGGTTGTCCTTGAAGAAGAACCCGCCTCTTCCACTCAATTTTCGTTTG
TATGCAGGAAGCGCAATCTCCCCAGATATCTTCTCCTTCAAGCTCAAAAT
■■Homology search results ■■ -
sp_hit_id Q8RXF1
Definition sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana
Align length 56
Score (bit) 85.9
E-value 1.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913126|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G05.
(508 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1 OS=Ar... 86 1e-16
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 OS=Mus musculu... 51 4e-06
sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 OS=Homo sapien... 50 5e-06
sp|A2VDN6|SF3A1_BOVIN Splicing factor 3 subunit 1 OS=Bos taurus ... 50 5e-06
sp|Q86A14|SF3A1_DICDI Probable splicing factor 3 subunit 1 OS=Di... 39 0.018
sp|P16709|UBIL_NPVAC Ubiquitin-like protein OS=Autographa califo... 32 1.7
sp|P49634|UBIQ_ACACA Ubiquitin OS=Acanthamoeba castellanii PE=3 ... 32 2.3
sp|Q9I8N6|CSF1R_DANRE Macrophage colony-stimulating factor 1 rec... 31 2.9
sp|Q58966|Y1571_METJA Uncharacterized protein MJ1571 OS=Methanoc... 31 2.9
sp|Q00495|CSF1R_RAT Macrophage colony-stimulating factor 1 recep... 31 3.8
sp|P09581|CSF1R_MOUSE Macrophage colony-stimulating factor 1 rec... 31 3.8
sp|P07333|CSF1R_HUMAN Macrophage colony-stimulating factor 1 rec... 31 3.8
sp|Q97LG6|PDXT_CLOAB Glutamine amidotransferase subunit pdxT OS=... 30 4.9
sp|P0C033|UBL1_ORYSJ Ubiquitin-like protein 1 OS=Oryza sativa su... 30 5.0
sp|P08565|UBIQ_TRYCR Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1 30 5.0
sp|P14624|UBIQ_CHLRE Ubiquitin OS=Chlamydomonas reinhardtii GN=U... 30 5.0
sp|P42739|UBIQ_ACECL Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1 30 5.0
sp|P69326|UBIQ_WHEAT Ubiquitin OS=Triticum aestivum PE=3 SV=1 30 6.6
sp|P69325|UBIQ_SOYBN Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1 30 6.6
sp|P69324|UBIQ_SOLTU Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3... 30 6.6
sp|P69318|UBIQ_SOLLC Ubiquitin OS=Solanum lycopersicum GN=UBI3 P... 30 6.6
sp|P22589|UBIQ_PHYIN Ubiquitin OS=Phytophthora infestans PE=1 SV=1 30 6.6
sp|P69323|UBIQ_PETCR Ubiquitin OS=Petroselinum crispum GN=PCUBI4... 30 6.6
sp|P69322|UBIQ_PEA Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1 30 6.6
sp|P69321|UBIQ_ORYSJ Ubiquitin OS=Oryza sativa subsp. japonica G... 30 6.6
sp|P69320|UBIQ_NICSY Ubiquitin OS=Nicotiana sylvestris GN=UBICEP... 30 6.6
sp|P13117|UBIQ_NEUCR Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=... 30 6.6
sp|P69319|UBIQ_MAIZE Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1 30 6.6
sp|P69317|UBIQ_LUPPO Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1 30 6.6
sp|P69316|UBIQ_LUPAL Ubiquitin OS=Lupinus albus PE=3 SV=1 30 6.6

>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1
OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2
Length = 785

Score = 85.9 bits (211), Expect = 1e-16
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKEKI+GEI +PA K+KLSG+ GF KDN+SLAHYNVG GE LTL+LRERGGRKR
Sbjct: 731 SLKEKIAGEIQIPANKQKLSGKAGFL-KDNMSLAHYNVGAGEILTLSLRERGGRKR 785


>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 OS=Mus musculus
GN=Sf3a1 PE=1 SV=1
Length = 791

Score = 50.8 bits (120), Expect = 4e-06
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+K KI +PA K+KL G F KD+ SLA+YN+ G + LAL+ERGGRK+
Sbjct: 738 IKVKIHEATGMPAGKQKLQYEG-IFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791


>sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 OS=Homo sapiens
GN=SF3A1 PE=1 SV=1
Length = 793

Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+K KI +PA K+KL G F KD+ SLA+YN+ G + LAL+ERGGRK+
Sbjct: 740 IKVKIHEATGMPAGKQKLQYEG-IFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793


>sp|A2VDN6|SF3A1_BOVIN Splicing factor 3 subunit 1 OS=Bos taurus
GN=SF3A1 PE=2 SV=1
Length = 793

Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+K KI +PA K+KL G F KD+ SLA+YN+ G + LAL+ERGGRK+
Sbjct: 740 IKVKIHEATGMPAGKQKLQYEG-IFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793


>sp|Q86A14|SF3A1_DICDI Probable splicing factor 3 subunit 1
OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1
Length = 760

Score = 38.5 bits (88), Expect = 0.018
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
LKEKI +P K+KL G KD S+A YN+ +T +++GG+K+
Sbjct: 706 LKEKIKELNGMPTNKQKLQAPGLSILKDTCSIAFYNLKSLAIVTCGQKKKGGKKK 760


>sp|P16709|UBIL_NPVAC Ubiquitin-like protein OS=Autographa
californica nuclear polyhedrosis virus GN=V-UBI PE=3
SV=2
Length = 77

Score = 32.0 bits (71), Expect = 1.7
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -1

Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGG 344
+ LK+KI+ + +P +++L G +D+ ++A YN+ TL + LR RGG
Sbjct: 23 VADLKQKIADKEGVPVDQQRLIFAGKQL-EDSKTMADYNIQKESTLHMVLRLRGG 76


>sp|P49634|UBIQ_ACACA Ubiquitin OS=Acanthamoeba castellanii PE=3
SV=1
Length = 76

Score = 31.6 bits (70), Expect = 2.3
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -1

Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGG 344
I ++K+KI + +P +++L G +D +LA YN+ TL L LR RGG
Sbjct: 23 IENVKQKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGG 76


>sp|Q9I8N6|CSF1R_DANRE Macrophage colony-stimulating factor 1
receptor OS=Danio rerio GN=csf1r PE=2 SV=1
Length = 977

Score = 31.2 bits (69), Expect = 2.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3

Query: 108 HLGVNNANQHPLNLI*TCQLQG*HLSPITPIAKYCCDAELPNFEVNKAE 254
HLG +++ +NL+ C H P+ I +YCC +L NF +KAE
Sbjct: 641 HLG---QHKNIVNLLGACT----HGGPVLVITEYCCHGDLLNFLRSKAE 682


>sp|Q58966|Y1571_METJA Uncharacterized protein MJ1571
OS=Methanocaldococcus jannaschii GN=MJ1571 PE=3 SV=1
Length = 292

Score = 31.2 bits (69), Expect = 2.9
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1

Query: 292 LQRHLLSVLIFNSSALLTSKLGNSASQQYL 203
L +H+L+++IFNS AL+ + L N QYL
Sbjct: 69 LSKHILTLIIFNSIALILAYLSNIPLLQYL 98


>sp|Q00495|CSF1R_RAT Macrophage colony-stimulating factor 1 receptor
OS=Rattus norvegicus GN=Csf1r PE=2 SV=1
Length = 978

Score = 30.8 bits (68), Expect = 3.8
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3

Query: 108 HLGVNNANQHPLNLI*TCQLQG*HLSPITPIAKYCCDAELPNFEVNKAELL 260
HLG +++ +NL+ C H P+ I +YCC +L NF KAE +
Sbjct: 637 HLG---QHENIVNLLGACT----HGGPVLVITEYCCYGDLLNFLRRKAEAM 680


tr_hit_id A9P877
Definition tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 56
Score (bit) 86.7
E-value 6.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913126|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G05.
(508 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Popul... 87 6e-16
tr|A7P2V2|A7P2V2_VITVI Chromosome chr1 scaffold_5, whole genome ... 80 4e-14
tr|A5C8X5|A5C8X5_VITVI Putative uncharacterized protein OS=Vitis... 80 4e-14
tr|A9RE34|A9RE34_PHYPA Predicted protein OS=Physcomitrella paten... 79 2e-13
tr|Q6EUD5|Q6EUD5_ORYSJ Os02g0245000 protein OS=Oryza sativa subs... 72 1e-11
tr|A2X2W1|A2X2W1_ORYSI Putative uncharacterized protein OS=Oryza... 72 1e-11
tr|Q94CL4|Q94CL4_ARATH Putative uncharacterized protein At5g1228... 65 2e-09
tr|A7T6G3|A7T6G3_NEMVE Predicted protein OS=Nematostella vectens... 59 2e-07
tr|A7RES3|A7RES3_NEMVE Predicted protein OS=Nematostella vectens... 59 2e-07
tr|A8IMT5|A8IMT5_CHLRE SF3A1 splicing factor 3a, subunit 1 OS=Ch... 57 5e-07
tr|Q5TW61|Q5TW61_ANOGA AGAP011328-PA OS=Anopheles gambiae GN=AGA... 55 3e-06
tr|B6N198|B6N198_BRAFL Putative uncharacterized protein (Fragmen... 53 1e-05
tr|B3RL27|B3RL27_TRIAD Putative uncharacterized protein OS=Trich... 52 1e-05
tr|Q6GPA9|Q6GPA9_XENLA MGC80562 protein OS=Xenopus laevis GN=MGC... 52 2e-05
tr|Q28BP7|Q28BP7_XENTR Splicing factor 3a, subunit 1, 120kDa (Fr... 52 2e-05
tr|B5X263|B5X263_SALSA Splicing factor 3 subunit 1 OS=Salmo sala... 52 2e-05
tr|Q3TVM1|Q3TVM1_MOUSE Putative uncharacterized protein OS=Mus m... 51 4e-05
tr|Q90X41|Q90X41_DANRE Novel protein similar to human splicing f... 50 5e-05
tr|Q4TCK3|Q4TCK3_TETNG Chromosome undetermined SCAF6854, whole g... 50 5e-05
tr|A6MJX3|A6MJX3_CALJA Splicing factor 3 subunit 1-like protein ... 50 5e-05
tr|B4E091|B4E091_HUMAN cDNA FLJ55438, highly similar to Splicing... 50 5e-05
tr|Q5ZM84|Q5ZM84_CHICK Putative uncharacterized protein OS=Gallu... 50 6e-05
tr|B4JHD7|B4JHD7_DROGR GH18068 OS=Drosophila grimshawi GN=GH1806... 50 8e-05
tr|B8BS45|B8BS45_THAPS Predicted protein OS=Thalassiosira pseudo... 49 1e-04
tr|Q297I7|Q297I7_DROPS GA14228 OS=Drosophila pseudoobscura pseud... 49 1e-04
tr|Q16I26|Q16I26_AEDAE Spliceosome associated protein OS=Aedes a... 49 1e-04
tr|B4KBM1|B4KBM1_DROMO GI23747 OS=Drosophila mojavensis GN=GI237... 49 1e-04
tr|B4G4J9|B4G4J9_DROPE GL22994 OS=Drosophila persimilis GN=GL229... 49 1e-04
tr|Q9VEP9|Q9VEP9_DROME CG16941 OS=Drosophila melanogaster GN=CG1... 49 1e-04
tr|B4PM97|B4PM97_DROYA GE26116 OS=Drosophila yakuba GN=GE26116 P... 49 1e-04

>tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 287

Score = 86.7 bits (213), Expect = 6e-16
Identities = 43/56 (76%), Positives = 51/56 (91%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKEKI+GEI LPA K+KLSG+ GF KDN+SLA+YNVGPGE+L+L+LRERGGRKR
Sbjct: 233 SLKEKIAGEIQLPANKQKLSGKAGFL-KDNMSLAYYNVGPGESLSLSLRERGGRKR 287


>tr|A7P2V2|A7P2V2_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00030195001
PE=4 SV=1
Length = 781

Score = 80.5 bits (197), Expect = 4e-14
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKEKI+GE+ LPA K+KLSG+ GF KDNLSLA+YNV GE L L+LRERGGRKR
Sbjct: 727 SLKEKIAGEVQLPANKQKLSGKAGFL-KDNLSLAYYNVAAGEPLALSLRERGGRKR 781


>tr|A5C8X5|A5C8X5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_003301 PE=4 SV=1
Length = 792

Score = 80.5 bits (197), Expect = 4e-14
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKEKI+GE+ LPA K+KLSG+ GF KDNLSLA+YNV GE L L+LRERGGRKR
Sbjct: 738 SLKEKIAGEVQLPANKQKLSGKAGFL-KDNLSLAYYNVAAGEPLALSLRERGGRKR 792


>tr|A9RE34|A9RE34_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_174116 PE=4 SV=1
Length = 793

Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = -1

Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRK 338
I SLKE+I+GE+ LPA K+KLS + GF KDNLSLA+YN+GPG+ LTL L+ERGGR+
Sbjct: 738 IKSLKERIAGEVQLPANKQKLSSQAGFL-KDNLSLAYYNIGPGDILTLGLKERGGRR 793


>tr|Q6EUD5|Q6EUD5_ORYSJ Os02g0245000 protein OS=Oryza sativa subsp.
japonica GN=OJ1134_F06.6 PE=4 SV=1
Length = 792

Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKE+I+GE+ LPA K+KLS R F KDNL+LA+YN+GPG + L LRERGGRK+
Sbjct: 738 SLKEQIAGELQLPANKQKLSVRTSFL-KDNLTLAYYNIGPGVVINLTLRERGGRKK 792


>tr|A2X2W1|A2X2W1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06527 PE=4 SV=1
Length = 801

Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -1

Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
SLKE+I+GE+ LPA K+KLS R F KDNL+LA+YN+GPG + L LRERGGRK+
Sbjct: 747 SLKEQIAGELQLPANKQKLSVRTSFL-KDNLTLAYYNIGPGVVINLTLRERGGRKK 801


>tr|Q94CL4|Q94CL4_ARATH Putative uncharacterized protein At5g12280
OS=Arabidopsis thaliana GN=At5g12280 PE=4 SV=1
Length = 419

Score = 64.7 bits (156), Expect = 2e-09
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = -1

Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLA 362
+ SLKEKISGEI P K+KL G+ GF KDN SLAHYNVG GE LTL+
Sbjct: 370 VASLKEKISGEIQFPTNKQKLRGKAGFL-KDNTSLAHYNVGAGEILTLS 417


>tr|A7T6G3|A7T6G3_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g231473 PE=4 SV=1
Length = 160

Score = 58.5 bits (140), Expect = 2e-07
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+K KI I +PA K+KL GG F KD+ SLA+YN GP T+ L L+ERGGRK+
Sbjct: 107 IKAKIHETIGMPAGKQKLQ-LGGIFIKDSNSLAYYNFGPASTVQLQLKERGGRKK 160


>tr|A7RES3|A7RES3_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g233857 PE=4 SV=1
Length = 762

Score = 58.5 bits (140), Expect = 2e-07
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = -1

Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+K KI I +PA K+KL GG F KD+ SLA+YN GP T+ L L+ERGGRK+
Sbjct: 709 IKAKIHETIGMPAGKQKLQ-LGGIFIKDSNSLAYYNFGPASTVQLQLKERGGRKK 762


>tr|A8IMT5|A8IMT5_CHLRE SF3A1 splicing factor 3a, subunit 1
OS=Chlamydomonas reinhardtii GN=SPL1 PE=4 SV=1
Length = 400

Score = 57.0 bits (136), Expect = 5e-07
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = -1

Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335
+ K++++ + LPA K+KL+ G F +D LSLAHYNV P L L L+ERGG ++
Sbjct: 342 VAEFKQRLAAVLELPANKQKLARDGVGFMRDELSLAHYNVSPDVVLNLGLKERGGARK 399