BP913126 |
Clone id |
YMU001_000026_G05 |
Library |
YMU01 |
Length |
530 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000026_G05. |
Accession |
BP913126 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTTTTTTTTTTTTTCACAAAGTTCATGAGGTGGCATTATAGGTCACAGAAGT GACTGCAAAACTGACAATTTTAACAGTCATCACCCACATCTTCTTTCTGGAAAATGTTAA TAGAATCTGCATTTAGGTGTAAATAATGCAAACCAACACCCCTTGAACCTTATATAAACA TGCCAATTACAAGGTTAGCATCTGAGCCCCATTACCCCCATTGCCAAGTACTGTTGCGAC GCCGAGTTGCCCAACTTTGAAGTTAATAAAGCTGAGCTGTTAAAAATAAGCACAGAGAGT AGGTGGCGCTGCAAGCAAGTCTAAACTGGCTTCCATCAACCCATATTGTTGAATTAGCGC TTTCTACCACCACGCTCTCTAAGAGCTAAGGTTAGTGTTTCGCCTGGTCCCACATTGTAG TGCGCCAATGAAAGGTTGTCCTTGAAGAAGAACCCGCCTCTTCCACTCAATTTTCGTTTG TATGCAGGAAGCGCAATCTCCCCAGATATCTTCTCCTTCAAGCTCAAAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8RXF1 |
Definition |
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana |
Align length |
56 |
Score (bit) |
85.9 |
E-value |
1.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P877 |
Definition |
tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
56 |
Score (bit) |
86.7 |
E-value |
6.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913126|Adiantum capillus-veneris mRNA, clone: YMU001_000026_G05. (508 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Popul... 87 6e-16 tr|A7P2V2|A7P2V2_VITVI Chromosome chr1 scaffold_5, whole genome ... 80 4e-14 tr|A5C8X5|A5C8X5_VITVI Putative uncharacterized protein OS=Vitis... 80 4e-14 tr|A9RE34|A9RE34_PHYPA Predicted protein OS=Physcomitrella paten... 79 2e-13 tr|Q6EUD5|Q6EUD5_ORYSJ Os02g0245000 protein OS=Oryza sativa subs... 72 1e-11 tr|A2X2W1|A2X2W1_ORYSI Putative uncharacterized protein OS=Oryza... 72 1e-11 tr|Q94CL4|Q94CL4_ARATH Putative uncharacterized protein At5g1228... 65 2e-09 tr|A7T6G3|A7T6G3_NEMVE Predicted protein OS=Nematostella vectens... 59 2e-07 tr|A7RES3|A7RES3_NEMVE Predicted protein OS=Nematostella vectens... 59 2e-07 tr|A8IMT5|A8IMT5_CHLRE SF3A1 splicing factor 3a, subunit 1 OS=Ch... 57 5e-07 tr|Q5TW61|Q5TW61_ANOGA AGAP011328-PA OS=Anopheles gambiae GN=AGA... 55 3e-06 tr|B6N198|B6N198_BRAFL Putative uncharacterized protein (Fragmen... 53 1e-05 tr|B3RL27|B3RL27_TRIAD Putative uncharacterized protein OS=Trich... 52 1e-05 tr|Q6GPA9|Q6GPA9_XENLA MGC80562 protein OS=Xenopus laevis GN=MGC... 52 2e-05 tr|Q28BP7|Q28BP7_XENTR Splicing factor 3a, subunit 1, 120kDa (Fr... 52 2e-05 tr|B5X263|B5X263_SALSA Splicing factor 3 subunit 1 OS=Salmo sala... 52 2e-05 tr|Q3TVM1|Q3TVM1_MOUSE Putative uncharacterized protein OS=Mus m... 51 4e-05 tr|Q90X41|Q90X41_DANRE Novel protein similar to human splicing f... 50 5e-05 tr|Q4TCK3|Q4TCK3_TETNG Chromosome undetermined SCAF6854, whole g... 50 5e-05 tr|A6MJX3|A6MJX3_CALJA Splicing factor 3 subunit 1-like protein ... 50 5e-05 tr|B4E091|B4E091_HUMAN cDNA FLJ55438, highly similar to Splicing... 50 5e-05 tr|Q5ZM84|Q5ZM84_CHICK Putative uncharacterized protein OS=Gallu... 50 6e-05 tr|B4JHD7|B4JHD7_DROGR GH18068 OS=Drosophila grimshawi GN=GH1806... 50 8e-05 tr|B8BS45|B8BS45_THAPS Predicted protein OS=Thalassiosira pseudo... 49 1e-04 tr|Q297I7|Q297I7_DROPS GA14228 OS=Drosophila pseudoobscura pseud... 49 1e-04 tr|Q16I26|Q16I26_AEDAE Spliceosome associated protein OS=Aedes a... 49 1e-04 tr|B4KBM1|B4KBM1_DROMO GI23747 OS=Drosophila mojavensis GN=GI237... 49 1e-04 tr|B4G4J9|B4G4J9_DROPE GL22994 OS=Drosophila persimilis GN=GL229... 49 1e-04 tr|Q9VEP9|Q9VEP9_DROME CG16941 OS=Drosophila melanogaster GN=CG1... 49 1e-04 tr|B4PM97|B4PM97_DROYA GE26116 OS=Drosophila yakuba GN=GE26116 P... 49 1e-04
>tr|A9P877|A9P877_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 287
Score = 86.7 bits (213), Expect = 6e-16 Identities = 43/56 (76%), Positives = 51/56 (91%) Frame = -1
Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 SLKEKI+GEI LPA K+KLSG+ GF KDN+SLA+YNVGPGE+L+L+LRERGGRKR Sbjct: 233 SLKEKIAGEIQLPANKQKLSGKAGFL-KDNMSLAYYNVGPGESLSLSLRERGGRKR 287
>tr|A7P2V2|A7P2V2_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030195001 PE=4 SV=1 Length = 781
Score = 80.5 bits (197), Expect = 4e-14 Identities = 41/56 (73%), Positives = 47/56 (83%) Frame = -1
Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 SLKEKI+GE+ LPA K+KLSG+ GF KDNLSLA+YNV GE L L+LRERGGRKR Sbjct: 727 SLKEKIAGEVQLPANKQKLSGKAGFL-KDNLSLAYYNVAAGEPLALSLRERGGRKR 781
>tr|A5C8X5|A5C8X5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003301 PE=4 SV=1 Length = 792
Score = 80.5 bits (197), Expect = 4e-14 Identities = 41/56 (73%), Positives = 47/56 (83%) Frame = -1
Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 SLKEKI+GE+ LPA K+KLSG+ GF KDNLSLA+YNV GE L L+LRERGGRKR Sbjct: 738 SLKEKIAGEVQLPANKQKLSGKAGFL-KDNLSLAYYNVAAGEPLALSLRERGGRKR 792
>tr|A9RE34|A9RE34_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_174116 PE=4 SV=1 Length = 793
Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/57 (66%), Positives = 48/57 (84%) Frame = -1
Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRK 338 I SLKE+I+GE+ LPA K+KLS + GF KDNLSLA+YN+GPG+ LTL L+ERGGR+ Sbjct: 738 IKSLKERIAGEVQLPANKQKLSSQAGFL-KDNLSLAYYNIGPGDILTLGLKERGGRR 793
>tr|Q6EUD5|Q6EUD5_ORYSJ Os02g0245000 protein OS=Oryza sativa subsp. japonica GN=OJ1134_F06.6 PE=4 SV=1 Length = 792
Score = 72.4 bits (176), Expect = 1e-11 Identities = 36/56 (64%), Positives = 45/56 (80%) Frame = -1
Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 SLKE+I+GE+ LPA K+KLS R F KDNL+LA+YN+GPG + L LRERGGRK+ Sbjct: 738 SLKEQIAGELQLPANKQKLSVRTSFL-KDNLTLAYYNIGPGVVINLTLRERGGRKK 792
>tr|A2X2W1|A2X2W1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06527 PE=4 SV=1 Length = 801
Score = 72.4 bits (176), Expect = 1e-11 Identities = 36/56 (64%), Positives = 45/56 (80%) Frame = -1
Query: 502 SLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 SLKE+I+GE+ LPA K+KLS R F KDNL+LA+YN+GPG + L LRERGGRK+ Sbjct: 747 SLKEQIAGELQLPANKQKLSVRTSFL-KDNLTLAYYNIGPGVVINLTLRERGGRKK 801
>tr|Q94CL4|Q94CL4_ARATH Putative uncharacterized protein At5g12280 OS=Arabidopsis thaliana GN=At5g12280 PE=4 SV=1 Length = 419
Score = 64.7 bits (156), Expect = 2e-09 Identities = 33/49 (67%), Positives = 37/49 (75%) Frame = -1
Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLA 362 + SLKEKISGEI P K+KL G+ GF KDN SLAHYNVG GE LTL+ Sbjct: 370 VASLKEKISGEIQFPTNKQKLRGKAGFL-KDNTSLAHYNVGAGEILTLS 417
>tr|A7T6G3|A7T6G3_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g231473 PE=4 SV=1 Length = 160
Score = 58.5 bits (140), Expect = 2e-07 Identities = 30/55 (54%), Positives = 38/55 (69%) Frame = -1
Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 +K KI I +PA K+KL GG F KD+ SLA+YN GP T+ L L+ERGGRK+ Sbjct: 107 IKAKIHETIGMPAGKQKLQ-LGGIFIKDSNSLAYYNFGPASTVQLQLKERGGRKK 160
>tr|A7RES3|A7RES3_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g233857 PE=4 SV=1 Length = 762
Score = 58.5 bits (140), Expect = 2e-07 Identities = 30/55 (54%), Positives = 38/55 (69%) Frame = -1
Query: 499 LKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 +K KI I +PA K+KL GG F KD+ SLA+YN GP T+ L L+ERGGRK+ Sbjct: 709 IKAKIHETIGMPAGKQKLQ-LGGIFIKDSNSLAYYNFGPASTVQLQLKERGGRKK 762
>tr|A8IMT5|A8IMT5_CHLRE SF3A1 splicing factor 3a, subunit 1 OS=Chlamydomonas reinhardtii GN=SPL1 PE=4 SV=1 Length = 400
Score = 57.0 bits (136), Expect = 5e-07 Identities = 26/58 (44%), Positives = 38/58 (65%) Frame = -1
Query: 508 ILSLKEKISGEIALPAYKRKLSGRGGFFFKDNLSLAHYNVGPGETLTLALRERGGRKR 335 + K++++ + LPA K+KL+ G F +D LSLAHYNV P L L L+ERGG ++ Sbjct: 342 VAEFKQRLAAVLELPANKQKLARDGVGFMRDELSLAHYNVSPDVVLNLGLKERGGARK 399
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