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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913127
Clone id YMU001_000026_G06
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGATAGAGAGTGTAGATGCCACAGAATGAATGGCCGGTCAGGACTTCCACACTAATAGA
AACAGTGTGTGTGTGAGAAGCAACTAATGACATTAGTGTGTGTGAGCAGGTGTGAGAGAT
ACATGATAGACAGAGAGAGATGCGCCAGAATATCGAGAAAATCGCATATTCTATCCGATT
AAAGTAGTACGTCGGCCATTTTGAAGAAATCCACAAGGAGAGGGAGAGAGGTTAGTAGAG
AGAAAGCTGTAAGCTGTAAGGACAAGAGATAGAGATACCCAGGATACAGATAGACACGGA
GACAGAAAGAAGACAAGAGGAAGCTGATTATCCAATCTATGTGTGAATTCCAATAATTAA
ACAAGAAAAAGTGAGAGAGTAGCTGGAATCCAACTCGAATTATATCAATGAGGTGAGAAG
GAATTTGATGCATGCATAAAACAAGAGAATTTTAACGATAACACAGATTACAATGGAAAT
GAGAACTTGGGATAAGGT
■■Homology search results ■■ -
sp_hit_id P37296
Definition sp|P37296|STV1_YEAST V-type proton ATPase subunit a, Golgi isoform OS=Saccharomyces cerevisiae
Align length 54
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913127|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G06.
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37296|STV1_YEAST V-type proton ATPase subunit a, Golgi isofo...    32   1.6  
sp|O13742|VPH1_SCHPO V-type proton ATPase subunit a OS=Schizosac...    30   8.2  

>sp|P37296|STV1_YEAST V-type proton ATPase subunit a, Golgi isoform
           OS=Saccharomyces cerevisiae GN=STV1 PE=1 SV=2
          Length = 890

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 183 FNRIEYAIFSIFWRISLCLSCISHTCSH-TLMSLVASHTHTVSISVEVLTGHSF 25
           FN  +  I  +   I  CL+CISHT S+  L +L  +H    S+  ++   ++F
Sbjct: 766 FNFGDVMIHQVIHTIEFCLNCISHTASYLRLWALSLAHAQLSSVLWDMTISNAF 819


>sp|O13742|VPH1_SCHPO V-type proton ATPase subunit a
           OS=Schizosaccharomyces pombe GN=vph1 PE=2 SV=1
          Length = 805

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 171 EYAIFSIFWRISLCLSCISHTCSH-TLMSLVASHTHTVSISVEVLTGHSF 25
           E  I  +   I  CL C+SHT S+  L +L  +H    S+   +   + F
Sbjct: 688 EVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWNMTLANGF 737
tr_hit_id B8BPX6
Definition tr|B8BPX6|B8BPX6_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 68
Score (bit) 35.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913127|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G06.
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BPX6|B8BPX6_THAPS Predicted protein OS=Thalassiosira pseudo...    35   2.0  
tr|Q1DBK9|Q1DBK9_MYXXD Peptidyl-prolyl cis-trans isomerase, FKBP...    33   5.7  
tr|B8BDE4|B8BDE4_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.7  

>tr|B8BPX6|B8BPX6_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_1083 PE=4 SV=1
          Length = 517

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 198 WPTYYFNRIEYAIFSIFWRISL--CLSCISHTCSHTLMSLVASHTHTVSISVEVLTGHSF 25
           WPT+    + YA+   FW++ L   LS  +   S  + +++A    TV+I   ++T    
Sbjct: 250 WPTFSRENMTYAVLKPFWKLGLSGALSITAEAWSFEITTILAGLLGTVAIDAHIITLSIA 309

Query: 24  CGIYTLYP 1
             I+  +P
Sbjct: 310 TFIFLSFP 317


>tr|Q1DBK9|Q1DBK9_MYXXD Peptidyl-prolyl cis-trans isomerase,
           FKBP-type domain protein OS=Myxococcus xanthus (strain
           DK 1622) GN=MXAN_1713 PE=4 SV=1
          Length = 364

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +2

Query: 269 IEIPRIQIDTETERRQEEADYPIYV*IPIIKQEKVRE*LE 388
           +E+PR  ID E  +R  EA+YPI V +  +  E+VRE L+
Sbjct: 234 VEVPRSLIDEEIRQRWAEAEYPILVSLG-LPHERVREGLD 272


>tr|B8BDE4|B8BDE4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30560 PE=4 SV=1
          Length = 208

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 150 FWRISLCLSCISHTCSHTLMSLVASHTHTVSISVEVLTGHSFCGIYT 10
           FWR  L L C +H C     +   S+ H  + S    T H+F   Y+
Sbjct: 153 FWRRELILYCAAHACCSYYHAGACSYYHVGACSSSSCTAHAFSPFYS 199