BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913128|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G07.
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=...    31   4.7  
sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitoch...    31   4.7  
sp|P42534|HYDL_STRCO Putative polyketide hydroxylase OS=Streptom...    31   4.7  
sp|O57963|SYK_PYRHO Lysyl-tRNA synthetase OS=Pyrococcus horikosh...    30   6.1  

>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2
           OS=Gallus gallus GN=USP2 PE=2 SV=1
          Length = 357

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +2

Query: 359 FHYQRCNHAVYFYRKFLYIVENHSFTKMEG 448
           F  Q CNHAVY     LY V NHS T M G
Sbjct: 283 FASQSCNHAVY----NLYAVSNHSGTTMGG 308


>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase,
           mitochondrial OS=Dictyostelium discoideum GN=l2hgdh PE=3
           SV=1
          Length = 446

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 114 KAFNNDVPEVWGLNENDRLKTSTTYSTGVLQSSNHTQPAGWSEF*SNFQPKGEV---YNL 284
           K+F ND+ E +G +    +K +         S++        +   + + +  +   Y++
Sbjct: 179 KSFGNDITEKFGKDSKSEIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSI 238

Query: 285 VCTGINSDQVRSTAY 329
           VC G+NSD++   AY
Sbjct: 239 VCGGMNSDRIAKVAY 253


>sp|P42534|HYDL_STRCO Putative polyketide hydroxylase
           OS=Streptomyces coelicolor GN=SCO5321 PE=3 SV=2
          Length = 627

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 135 PEVWGLNENDRLKTSTTYSTGVLQSSNHTQPAGWSE 242
           P +W     DRL T   Y   ++  S+  QP GW E
Sbjct: 511 PHLWVRRGQDRLSTLDLYEDSLVLLSDAAQPTGWHE 546


>sp|O57963|SYK_PYRHO Lysyl-tRNA synthetase OS=Pyrococcus horikoshii
           GN=lysS PE=1 SV=1
          Length = 523

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 3   YPLHYLHRGKNEQRAQFGMWKTVEALQGFSANEPQKWKAF----NNDVPEVWGLNEN 161
           Y + +  R K  +     MW   +  +    N PQ+WK +     ++VP+ WG +E+
Sbjct: 46  YIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHES 102

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913128|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G07.
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4I9G2|A4I9G2_LEIIN Beta prime cop protein, putative OS=Leish...    37   0.72 
tr|Q4Q3L5|Q4Q3L5_LEIMA Beta prime cop protein, putative OS=Leish...    36   1.6  
tr|A4HM28|A4HM28_LEIBR Beta prime cop protein, putative OS=Leish...    34   4.6  
tr|B1Z9A6|B1Z9A6_METPB Putative uncharacterized protein OS=Methy...    33   7.9  
tr|A3Q169|A3Q169_MYCSJ Transcriptional regulator, HxlR family OS...    29   9.5  

>tr|A4I9G2|A4I9G2_LEIIN Beta prime cop protein, putative
           OS=Leishmania infantum GN=LinJ33.3000 PE=4 SV=1
          Length = 884

 Score = 37.0 bits (84), Expect = 0.72
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 15  YLHRGKNEQRAQFGMWKTVEALQGFSANEPQKWKA-FNNDVPEVWGLNENDRLKTSTTYS 191
           YL  G +++  +   ++T   LQ FS +E       F+ D+P ++ ++E+D +   +T +
Sbjct: 202 YLLSGSDDRTVRLWDYQTKACLQVFSFHEDNVASVLFHPDLPVIYSISESDSIAAFSTET 261

Query: 192 TGVLQSSNHTQPA-GWS 239
             +L S NH+    GWS
Sbjct: 262 FRLLYSCNHSDMGRGWS 278


>tr|Q4Q3L5|Q4Q3L5_LEIMA Beta prime cop protein, putative
           OS=Leishmania major GN=LmjF33.3210 PE=4 SV=1
          Length = 884

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 15  YLHRGKNEQRAQFGMWKTVEALQGFSANEPQKWKA-FNNDVPEVWGLNENDRLKTSTTYS 191
           YL  G +++  +   ++T   LQ FS ++       F+ D+P ++ ++E+D +   +T +
Sbjct: 202 YLLSGSDDRTVRLWDYQTKACLQVFSFHDDNVASVLFHPDLPVIYSISESDSIAAFSTET 261

Query: 192 TGVLQSSNHTQPA-GWS 239
             +L S NH+    GWS
Sbjct: 262 FRLLYSCNHSDMGRGWS 278


>tr|A4HM28|A4HM28_LEIBR Beta prime cop protein, putative
           OS=Leishmania braziliensis GN=LbrM33_V2.3480 PE=4 SV=1
          Length = 904

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 15  YLHRGKNEQRAQFGMWKTVEALQGFSANEPQKWKA-FNNDVPEVWGLNENDRLKTSTTYS 191
           YL  G +++  +   ++T   LQ FS ++       F+ D+P ++ ++E+D +   +T +
Sbjct: 202 YLLSGSDDRTVRLWDYQTKACLQVFSFHDENVASVLFHPDLPVIYSISESDHIAAFSTET 261

Query: 192 TGVLQSSNHTQPA-GWS 239
             +L S +H+    GWS
Sbjct: 262 FRLLYSCSHSDMGRGWS 278


>tr|B1Z9A6|B1Z9A6_METPB Putative uncharacterized protein
           OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
           13946 / BJ001) GN=Mpop_2350 PE=4 SV=1
          Length = 356

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 146 PHFRHIVVESLPLLWLISRKXLESFHCLPH 57
           PHF H +VE+LP  W ++R+ LE+   + H
Sbjct: 110 PHFGHFLVEALPRYWQLARQPLENRKIVVH 139


>tr|A3Q169|A3Q169_MYCSJ Transcriptional regulator, HxlR family
           OS=Mycobacterium sp. (strain JLS) GN=Mjls_3117 PE=4 SV=1
          Length = 314

 Score = 28.9 bits (63), Expect(2) = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 195 GVLQSSNHTQPAGWSEF*SNFQPKGEVY 278
           GVLQ++ H Q A WSE+  +  PKG  +
Sbjct: 223 GVLQAAAHPQRADWSEY--HLTPKGRAF 248



 Score = 22.7 bits (47), Expect(2) = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 289 ALVLTAIK*DQQLIPSLAC--CEPGFSLPAMQ 378
           AL+LT     Q+ +P LAC  CE   +  A++
Sbjct: 270 ALILTHTACGQRFVPELACDQCEETLTADAVR 301