NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913131
Clone id YMU001_000026_G11
Library
Length 256
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCCATTGAATAATCCAACACGCTTTATCAGAGAATTTGAGCTTGAAGATCATCTAGGAT
GCTTAAGAATCCAATTCCAATGCCAAAGGACCGTGTTATAATTGAGAGAATTGGATGCTC
AAGATGCTAAAGAGGAGACAAATGTAGCAATCAGAGAAATTGCAAGGCTGCAACAACAAA
TAAAAAGTCTCCATGATGGAAAAAAAAGCATGCAAGATGCACTAGAATGGGAAAACAGAG
ACACGTCATGTCTCTA
■■Homology search results ■■ -
sp_hit_id Q9Y7Y1
Definition sp|Q9Y7Y1|SGM1_SCHPO Protein sgm1 OS=Schizosaccharomyces pombe
Align length 51
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913131|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G11.
         (256 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y7Y1|SGM1_SCHPO Protein sgm1 OS=Schizosaccharomyces pombe G...    30   2.8  
sp|Q54J58|Y7870_DICDI Uncharacterized protein DDB_G0288281 OS=Di...    30   3.7  
sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS...    29   6.3  
sp|A9KJ27|GATB_CLOPH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    29   6.3  

>sp|Q9Y7Y1|SGM1_SCHPO Protein sgm1 OS=Schizosaccharomyces pombe
           GN=sgm1 PE=2 SV=1
          Length = 547

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 39  ELEDHLGCLRIQFQCQRTVL*LRELDAQDAKEETNVAIREIARLQQQIKSL 191
           E+E+ L   + QF+ + ++L   + D Q   EE  V   E+ RL +Q+++L
Sbjct: 99  EMEEQLELQKSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETL 149


>sp|Q54J58|Y7870_DICDI Uncharacterized protein DDB_G0288281
           OS=Dictyostelium discoideum GN=DDB_G0288281 PE=4 SV=2
          Length = 51

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 RIGCSRC*RGDKCSNQRNCKAATTNK 184
           + GCS C  GDKCS+   C + T  K
Sbjct: 26  KCGCSDCKCGDKCSSDCKCTSCTCKK 51


>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4
           OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1
          Length = 980

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 180 IKSLHDGKKSMQDALEWENRD 242
           +KS+HD +K M + +EW+N D
Sbjct: 723 LKSIHDVEKKMANKVEWDNTD 743


>sp|A9KJ27|GATB_CLOPH Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=gatB PE=3 SV=1
          Length = 478

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 171 QQQIKSLHDGKKSMQDALEW-ENRDTS 248
           ++QI+ L DGKK +Q+   W +N+DTS
Sbjct: 232 KRQIELLEDGKKVIQETRRWDDNKDTS 258
tr_hit_id A3DDY2
Definition tr|A3DDY2|A3DDY2_CLOTH Condensin subunit Smc OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
Align length 67
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913131|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G11.
         (256 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3DDY2|A3DDY2_CLOTH Condensin subunit Smc OS=Clostridium ther...    36   1.1  
tr|B8BXW4|B8BXW4_THAPS Predicted protein OS=Thalassiosira pseudo...    35   1.9  
tr|Q2KF17|Q2KF17_MAGGR Putative uncharacterized protein OS=Magna...    35   1.9  
tr|A4RAX3|A4RAX3_MAGGR Putative uncharacterized protein OS=Magna...    35   1.9  
tr|A6C0X8|A6C0X8_9PLAN Putative uncharacterized protein OS=Planc...    35   2.5  
tr|A0CTT0|A0CTT0_PARTE Chromosome undetermined scaffold_27, whol...    34   3.2  
tr|Q5B791|Q5B791_EMENI Putative uncharacterized protein OS=Emeri...    33   9.3  

>tr|A3DDY2|A3DDY2_CLOTH Condensin subunit Smc OS=Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237) GN=Cthe_0927
           PE=4 SV=1
          Length = 1190

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +3

Query: 39  ELEDHLGCLRIQFQCQRTVL*LRELDAQDAKEETNVAIREIARLQQQIKSLHDGKKSMQD 218
           ELE+ L  LR Q +  +  L LRE        E NV I  IAR +++IK L +   S++D
Sbjct: 197 ELENQLEPLREQSEVAKRYLGLRETLKV---LEVNVYIENIARYKEKIKELEENYASVKD 253

Query: 219 ALEWENR 239
            ++ EN+
Sbjct: 254 NIDSENK 260


>tr|B8BXW4|B8BXW4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_21769 PE=4 SV=1
          Length = 1310

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 229 HSSASCMLFFPSWRLFICCCSLAISLIA 146
           H+S  C + F +W+LFI  CSLA+S +A
Sbjct: 153 HTSRHCRVMFNTWKLFIWWCSLALSSLA 180


>tr|Q2KF17|Q2KF17_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea 70-15 GN=MGCH7_ch7g869 PE=4 SV=1
          Length = 1750

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 117 AQDAKEETNVAIREIARLQQQIKSLHDGKKSMQDALEWENR 239
           A D +EE   A++E+  +Q Q++  H   KS+ D + +ENR
Sbjct: 211 ASDLREEALAAVKELPVIQGQLEKAHAEMKSLDDMVAYENR 251


>tr|A4RAX3|A4RAX3_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_03067 PE=4 SV=1
          Length = 1750

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 117 AQDAKEETNVAIREIARLQQQIKSLHDGKKSMQDALEWENR 239
           A D +EE   A++E+  +Q Q++  H   KS+ D + +ENR
Sbjct: 211 ASDLREEALAAVKELPVIQGQLEKAHAEMKSLDDMVAYENR 251


>tr|A6C0X8|A6C0X8_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_05350 PE=4
           SV=1
          Length = 1263

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 48  DHLGCLRIQFQCQRTVL*LRELDAQDAKEETNVAIREIARLQQQIKSLHDGKKSMQDAL- 224
           + L C R+Q   ++  L L + + QD +++    +   A  + Q  S  +  KS+QDAL 
Sbjct: 587 EQLACDRVQLTTEQDRLKLSQSELQDQQQKLQEELLTFAERESQFASQQEELKSLQDALA 646

Query: 225 ----EWENRDTS 248
               EWE    +
Sbjct: 647 EQKQEWEQEQAA 658


>tr|A0CTT0|A0CTT0_PARTE Chromosome undetermined scaffold_27, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00010431001 PE=4 SV=1
          Length = 1028

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +3

Query: 114 DAQDAKEETNVAIREIARLQQQIKSLHDGKKSMQDALEWENR 239
           ++ D KE+      EIARL+ Q ++LHD ++ +Q+A+E  NR
Sbjct: 632 ESDDQKEQIKKLNDEIARLKTQEQNLHDIERKLQNAVEEINR 673


>tr|Q5B791|Q5B791_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN3589.2 PE=4 SV=1
          Length = 447

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 114 DAQDAKEETNVAIREIARLQQQIKSLHDGKKSMQDALEWENRDTS 248
           D +D+ EET    R++ARLQ++++ L D   + Q+    E+ D S
Sbjct: 83  DEEDSDEETESVERKLARLQREVEELKDEMAASQNRPTSESGDVS 127