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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913132
Clone id YMU001_000026_G12
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTAGTGTCAAGAATCTGTAAAGGAACTTTCGGTGCACAAACAAA
AGTCCTACTGAAAATCAGTGAAGCACAGAATCATCAATTAATTACACTACATCCCATAAA
CTCCGTTGTAAAGAAATCCGAACTCATGATTGTTACTAAGGTTGACAAAACGCAGAGCAA
TGCTCTCTGCGCTTGTAATCACGTGAAAGGTACAGCCATTGTCGGAATTCTAAGGCTTAT
TATTTTCCTCTGGTACATCCACAGCTCCCTCAGAAGATTTTGATTTACCTTCAAATCACG
ACCAGAAGCTAAACGCAGCCAAAGGTCTGATAAATCTTTAGAATCTTAATGTGTTATGTT
ACACTGGGTAAATGAACTCAACAAACTCCCGTCATCCCGAGCCCCAATCCTTCAAATGAA
TGTATGAGAACTTTGCCCCCCAAAACTCCAAAAAGGGAATATTGCGTATCCTGTAAGTCT
ACACTCTCA
■■Homology search results ■■ -
sp_hit_id Q6BMN7
Definition sp|Q6BMN7|SDS23_DEBHA Protein SDS23 OS=Debaryomyces hansenii
Align length 66
Score (bit) 33.1
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913132|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G12.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BMN7|SDS23_DEBHA Protein SDS23 OS=Debaryomyces hansenii GN=...    33   0.63 
sp|Q06304|AERA_AERSO Aerolysin OS=Aeromonas sobria GN=asa1 PE=3 ...    32   1.1  
sp|Q08676|AERA_AERSA Aerolysin OS=Aeromonas salmonicida GN=ash3 ...    32   1.1  
sp|Q54DK4|AK1_DICDI Alpha-protein kinase 1 OS=Dictyostelium disc...    31   3.1  
sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melano...    30   4.1  
sp|A0A1F4|EYS_DROME Protein eyes shut OS=Drosophila melanogaster...    30   4.2  
sp|P10577|NTRC_RHIME Nitrogen assimilation regulatory protein OS...    30   5.4  
sp|Q9ZDH0|Y358_RICPR Putative polysaccharide polymerase RP358 OS...    30   6.9  
sp|Q1LT04|SYT_BAUCH Threonyl-tRNA synthetase OS=Baumannia cicade...    30   6.9  

>sp|Q6BMN7|SDS23_DEBHA Protein SDS23 OS=Debaryomyces hansenii
           GN=SDS23 PE=3 SV=2
          Length = 550

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +2

Query: 80  LITLHPINSVVKKSELMIVTKVDKTQSNAL--CACNHVKGTAIVGIL---RLIIFLWYIH 244
           ++ LHP N  VK SE   + K  ++  N +   A  ++ GT I GIL   RLI ++W   
Sbjct: 224 IVKLHPKNPFVKFSEQDTLYKAMESLGNGVHRVAITNMNGTKITGILSQRRLIKYMW--- 280

Query: 245 SSLRRF 262
            + RRF
Sbjct: 281 ENARRF 286


>sp|Q06304|AERA_AERSO Aerolysin OS=Aeromonas sobria GN=asa1 PE=3
           SV=1
          Length = 488

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 372 GSLLSSFTQCNITH*DSKDLSDLWLRLASGRDLKVNQNLLRELWMYQRKIISLRIPTMA 196
           G+L+S   Q  IT      L+D W+ +  G + ++ Q    E W Y    +S  IPT++
Sbjct: 60  GNLVSRMGQWQIT-----GLADRWVIMGPGYNGEIKQGTAGETWCYPNSPVSGEIPTLS 113


>sp|Q08676|AERA_AERSA Aerolysin OS=Aeromonas salmonicida GN=ash3
           PE=3 SV=1
          Length = 489

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 372 GSLLSSFTQCNITH*DSKDLSDLWLRLASGRDLKVNQNLLRELWMYQRKIISLRIPTMA 196
           G+L+S   Q  IT      L+D W+ +  G + ++ Q    E W Y    +S  IPT++
Sbjct: 61  GNLVSRMGQWQIT-----GLADRWVIMGPGYNGEIKQGTAGETWCYPNSPVSGEIPTLS 114


>sp|Q54DK4|AK1_DICDI Alpha-protein kinase 1 OS=Dictyostelium
           discoideum GN=ak1 PE=3 SV=1
          Length = 1352

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +3

Query: 159 AMLSALVIT*KVQPLSEF*GLLFSSGTSTAPSEDFDLPSNHDQKLNAAKGLINL*NLNVL 338
           A +S  ++T    P   F    +S G S+AP+   +   N +  LN   G++N  NLN+ 
Sbjct: 536 ASISLTLLTPSPSPSPSF---NYSGGVSSAPNNSLNNSCNGNNNLN--NGMLNFSNLNIG 590

Query: 339 CYTG*MNSTNS 371
             T    STNS
Sbjct: 591 GSTSSACSTNS 601


>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila
            melanogaster GN=Rya-r44F PE=1 SV=3
          Length = 5127

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 266  FTFKSRPEAKRSQRS---DKSLES*CVMLHWVNELNKLPSSRAPILQMNV*ELCPPKLQK 436
            F+ KSR +++    +   D SLE    + H  N +N+  ++RAP L++N  E+ P  + +
Sbjct: 1439 FSKKSRDQSREKMGARTLDTSLERRNTVAHGRNVVNQQMTTRAPTLRLNNAEIPPSPVPQ 1498

Query: 437  G 439
            G
Sbjct: 1499 G 1499


>sp|A0A1F4|EYS_DROME Protein eyes shut OS=Drosophila melanogaster
            GN=eys PE=1 SV=1
          Length = 2176

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 340  VTLGK*TQQTPVIPSPNPSNECMRTLPPKT 429
            VTL   TQ  P IP   PS +  +TLPP T
Sbjct: 938  VTLPPVTQPPPTIPPTPPSTQSAQTLPPPT 967


>sp|P10577|NTRC_RHIME Nitrogen assimilation regulatory protein
           OS=Rhizobium meliloti GN=ntrC PE=1 SV=2
          Length = 484

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 SDLWLRLASGRDLK--VNQNLLRELWMYQRKIISLRIPTM 199
           SD+ +  A+ +DLK  +NQ L RE   Y+  ++ LR+P +
Sbjct: 271 SDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPL 310


>sp|Q9ZDH0|Y358_RICPR Putative polysaccharide polymerase RP358
           OS=Rickettsia prowazekii GN=RP358 PE=3 SV=1
          Length = 405

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = +2

Query: 80  LITLHPINSVVKKSELMIVTKVDKTQSNALCACN--HVKGTAIVGILRLIIFLWYIHSS 250
           L  +HPINS+V  +++ ++  + +  SNA+   N  ++K + I+GI+  I+  +  +SS
Sbjct: 87  LFAVHPINSLVTFTKVFVLLFL-RFVSNAVTFQNVLYIKNSLILGIITAILLFFIEYSS 144


>sp|Q1LT04|SYT_BAUCH Threonyl-tRNA synthetase OS=Baumannia
           cicadellinicola subsp. Homalodisca coagulata GN=thrS
           PE=3 SV=1
          Length = 642

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 56  ISEAQNHQLITLHPINSVVKKSELMIVTKVDKTQSNAL-CACNHVKGTAI 202
           I+   N++L+    ++ +++ S+L I+T  DK   + L C+CNH+ G AI
Sbjct: 36  IASYLNNRLVDA--VDLIMQDSKLDIITAEDKAGLDILRCSCNHLLGHAI 83
tr_hit_id B4GT95
Definition tr|B4GT95|B4GT95_DROPE GL26686 OS=Drosophila persimilis
Align length 52
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913132|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_G12.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4GT95|B4GT95_DROPE GL26686 OS=Drosophila persimilis GN=GL266...    36   1.1  
tr|A4SUE4|A4SUE4_AERS4 TraD protein OS=Aeromonas salmonicida (st...    34   3.2  
tr|A0YMQ3|A0YMQ3_9CYAN Putative uncharacterized protein OS=Lyngb...    33   7.1  
tr|B3NKV9|B3NKV9_DROER GG21271 OS=Drosophila erecta GN=GG21271 P...    33   9.3  

>tr|B4GT95|B4GT95_DROPE GL26686 OS=Drosophila persimilis GN=GL26686
           PE=4 SV=1
          Length = 194

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = -1

Query: 321 KDLSDLWLRLASGRDLKVNQNLLRELWMYQRKIISLRIPTMAVPFT*LQAQR 166
           K L ++WL+     ++++ Q  LRE+W+ QR+++ +R+    +    LQ +R
Sbjct: 26  KRLREMWLQQRRLLEMRLQQKRLREMWLQQRRLLEMRLQQRGLREMRLQQRR 77


>tr|A4SUE4|A4SUE4_AERS4 TraD protein OS=Aeromonas salmonicida
           (strain A449) GN=traD PE=4 SV=1
          Length = 720

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 387 GARDDGSLLSSFTQCNITH*DS-KDLSDLWLRLASGRDLKVNQNLLRELWMYQRKIISL- 214
           G RD G     F   N  H +S K L  +WL +A+   L + +N  R +W +  ++ SL 
Sbjct: 372 GVRDGGENGWLFITSNQKHHESLKPLISMWLSIAANSLLSMGENRYRRVWFFYDELPSLH 431

Query: 213 RIPTMAVPFT*LQAQR 166
           ++P++  PF   +A++
Sbjct: 432 KLPSL--PFIIAEARK 445


>tr|A0YMQ3|A0YMQ3_9CYAN Putative uncharacterized protein OS=Lyngbya
           sp. PCC 8106 GN=L8106_16464 PE=4 SV=1
          Length = 658

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 325 ILMCYVTLGK*TQQTPVIPSPNPSNECMRTLPPKTPKR 438
           IL C+V+  + + Q P +P+P   N    TLPPK P++
Sbjct: 141 ILGCWVSYYEVSAQLPQVPTPAQENVVSPTLPPKRPEQ 178


>tr|B3NKV9|B3NKV9_DROER GG21271 OS=Drosophila erecta GN=GG21271 PE=4
           SV=1
          Length = 799

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 107 VVKKSELMIVTKVDKTQSNALCACNHVKG-TAIVGILRLIIFLWYIHSSLRRF*FTFKSR 283
           V+  S L+I+  VD   ++ +    ++   T +VG+L +++ LWYI +   R    F+  
Sbjct: 704 VIDHSNLLIIQAVDCEPTDKVALLGYISAFTLLVGLLTILLVLWYIRAKDAREFARFEE- 762

Query: 284 PEAKRSQRSDKSL 322
            + K S R +  L
Sbjct: 763 -DQKNSVRQENPL 774