BP913134 |
Clone id |
YMU001_000026_H02 |
Library |
YMU01 |
Length |
268 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000026_H02. |
Accession |
BP913134 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAGGAAACCCATCCTCCCCTTGCACTATTGTATGCAGAGATTGATACCCATTGGCTTTTG GCTGCACAATGTAATCCTTCACCTTCAGGCATGTCTGAGGCCAAAGCCTGTGGACAATCT CAAGAGCTGCATAGCAATCCTCTTTGCTTGTCACTATCAAGCGCAAGCCTTGCTAATCAT GTACTTCCTCCAGATCCTTGCTTTTCCTTCTTCAAGAAGGTTCTTTTCAAGTTTCTCGAT AGCAGCTACAATTGTGGACTCCCTAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q49640 |
Definition |
sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae |
Align length |
68 |
Score (bit) |
71.6 |
E-value |
1.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913134|Adiantum capillus-veneris mRNA, clone: YMU001_000026_H02. (268 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacte... 72 1e-12 sp|P66014|RELA_MYCTU Probable GTP pyrophosphokinase OS=Mycobacte... 71 1e-12 sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacte... 71 1e-12 sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epi... 69 1e-11 sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epi... 69 1e-11 sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antib... 67 2e-11 sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aur... 67 2e-11 sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coeli... 67 4e-11 sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 65 1e-10 sp|P55133|RELA_VIBSS GTP pyrophosphokinase OS=Vibrio sp. (strain... 65 1e-10 sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 64 3e-10 sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis ... 64 3e-10 sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influe... 63 5e-10 sp|Q54089|RELA_STREQ Putative GTP pyrophosphokinase OS=Streptoco... 62 9e-10 sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3... 62 1e-09 sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 60 3e-09 sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri ... 60 3e-09 sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (... 60 3e-09 sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O... 60 3e-09 sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O... 60 3e-09 sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 59 6e-09 sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium gl... 59 6e-09 sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 57 2e-08 sp|P0AG24|SPOT_ECOLI Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 57 2e-08 sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyropho... 57 2e-08
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1 Length = 787
Score = 71.6 bits (174), Expect = 1e-12 Identities = 31/68 (45%), Positives = 43/68 (63%) Frame = -1
Query: 205 KSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVKDYIVQPKANGYQSLHTI 26 K +D +++HD G+R++ DCYAA+ +VH LW + KDYI QP+ YQSLHT Sbjct: 305 KGRDFDDIHDLVGIRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTT 364
Query: 25 VQGEDGFP 2 V G +G P Sbjct: 365 VVGPEGKP 372
>sp|P66014|RELA_MYCTU Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1 Length = 790
Score = 71.2 bits (173), Expect = 1e-12 Identities = 31/68 (45%), Positives = 43/68 (63%) Frame = -1
Query: 205 KSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVKDYIVQPKANGYQSLHTI 26 K +D +++HD G+R++ DCYAA+ +VH LW + KDYI QP+ YQSLHT Sbjct: 308 KGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTT 367
Query: 25 VQGEDGFP 2 V G +G P Sbjct: 368 VVGPEGKP 375
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1 Length = 790
Score = 71.2 bits (173), Expect = 1e-12 Identities = 31/68 (45%), Positives = 43/68 (63%) Frame = -1
Query: 205 KSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVKDYIVQPKANGYQSLHTI 26 K +D +++HD G+R++ DCYAA+ +VH LW + KDYI QP+ YQSLHT Sbjct: 308 KGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTT 367
Query: 25 VQGEDGFP 2 V G +G P Sbjct: 368 VVGPEGKP 375
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Length = 729
Score = 68.6 bits (166), Expect = 1e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 244 HIYSIYRKMIKQ------KKQFDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFK 297
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 298 DYIAMPKQNMYQSLHTTVVGPNGDP 322
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Length = 729
Score = 68.6 bits (166), Expect = 1e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 244 HIYSIYRKMIKQ------KKQFDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFK 297
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 298 DYIAMPKQNMYQSLHTTVVGPNGDP 322
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1 Length = 841
Score = 67.4 bits (163), Expect = 2e-11 Identities = 32/68 (47%), Positives = 42/68 (61%) Frame = -1
Query: 205 KSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVKDYIVQPKANGYQSLHTI 26 + +D E++D G+R++V + DCYAAL VH W + KDYI PK N YQSLHT Sbjct: 349 RGRDFAEIYDLVGIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTT 408
Query: 25 VQGEDGFP 2 V G +G P Sbjct: 409 VIGPNGKP 416
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Length = 736
Score = 67.4 bits (163), Expect = 2e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 251 HIYSIYRKMMKQ------KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFK 304
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 305 DYIAMPKQNLYQSLHTTVVGPNGDP 329
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 Length = 736
Score = 67.4 bits (163), Expect = 2e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 251 HIYSIYRKMMKQ------KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFK 304
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 305 DYIAMPKQNLYQSLHTTVVGPNGDP 329
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 Length = 736
Score = 67.4 bits (163), Expect = 2e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 251 HIYSIYRKMMKQ------KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFK 304
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 305 DYIAMPKQNLYQSLHTTVVGPNGDP 329
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 Length = 736
Score = 67.4 bits (163), Expect = 2e-11 Identities = 37/85 (43%), Positives = 47/85 (55%) Frame = -1
Query: 256 HNCSCYRET*KEPS*RRKSKDLEEVHD*QGLRLIVTSKEDCYAALEIVHRLWPQTCLKVK 77 H S YR+ K+ K +++ D +R+IV S DCYA L +VH LW + K Sbjct: 251 HIYSIYRKMMKQ------KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFK 304
Query: 76 DYIVQPKANGYQSLHTIVQGEDGFP 2 DYI PK N YQSLHT V G +G P Sbjct: 305 DYIAMPKQNLYQSLHTTVVGPNGDP 329
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q941I9 |
Definition |
tr|Q941I9|Q941I9_TOBAC RelA/spoT-like protein RSH2 OS=Nicotiana tabacum |
Align length |
69 |
Score (bit) |
87.8 |
E-value |
2.0e-16 |
Report |
|