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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913140
Clone id YMU001_000026_H08
Library
Length 610
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACCCACCACATGACTAGAAGCTATAGTACATTGCAATTGGATCAGTACCACTTCGTACG
TGTACTGATGGTAGTAGGTACGTGGCAGTACGTGTCAACCCTGTATGCAAGGCCCAAGGA
GACCTAAGGTTTCAGCTCATGGGAGACTTCCTCGATAGAGCTTAGAGATTCGTAAAATCT
CGACACCCTTGTATCTCTTGCAGATCACGTCATCAACATATTACGGTCGCTGCATCCAAA
CCATTATTGGGAGGCATAGAACAACTGCTTCTCTCTGGTTGAAGCATGTTATACACCCAC
CACATGACTAGAAGGTTGAAGCTTTTGCAAGGGTGGTTTGCACTTAGATTCAATTGGGTC
GTTCTCAAATCATTGTCCTCAAGCTTGCCTTTGCCCTTATCCTTTGAGATCTCTTGCCTT
TGCCTTTATGAGCAATCTAGAGACAAATGACCACGCTTTCCACAATTTGTAATAATGGCA
TTGGACTTCTTTTTAGTTTCCGATATAGCATGTGCTAATTCATCACCTTTCAAGACCCGA
ACTTTACATTGGGAGAGTAAGACGACCTCCTCCTCAATAATGCATGACAAAATATTGAGC
TCTCTCTCCC
■■Homology search results ■■ -
sp_hit_id P62634
Definition sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus
Align length 40
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913140|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_H08.
         (610 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Ratt...    32   1.9  
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Po...    32   1.9  
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mu...    32   1.9  
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Ho...    32   1.9  
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga...    32   1.9  
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bo...    32   1.9  
sp|Q60664|LRMP_MOUSE Lymphoid-restricted membrane protein OS=Mus...    31   4.3  
sp|Q7SDY6|SLU7_NEUCR Pre-mRNA-splicing factor slu-7 OS=Neurospor...    30   9.6  
sp|O02751|CFDP2_BOVIN Craniofacial development protein 2 OS=Bos ...    30   9.6  
sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=2      30   9.7  

>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus
           norvegicus GN=Cnbp PE=2 SV=1
          Length = 177

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 79  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 118


>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo
           abelii GN=CNBP PE=2 SV=1
          Length = 177

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 79  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 118


>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus
           musculus GN=Cnbp PE=2 SV=2
          Length = 178

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 80  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 119


>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo
           sapiens GN=CNBP PE=1 SV=1
          Length = 177

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 79  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 118


>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein
           OS=Gallus gallus GN=CNBP PE=2 SV=1
          Length = 172

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 74  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113


>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos
           taurus GN=CNBP PE=2 SV=1
          Length = 170

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 530 KGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 72  RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 111


>sp|Q60664|LRMP_MOUSE Lymphoid-restricted membrane protein OS=Mus
           musculus GN=Lrmp PE=1 SV=1
          Length = 539

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 578 IEEEVVLLSQCKVRVLKGDELAHAISETKKKSNAI 474
           +E+ +VLLSQC  RV    E+  AI++  + S A+
Sbjct: 261 LEKSIVLLSQCTARVASRAEMLGAINQESRVSRAV 295


>sp|Q7SDY6|SLU7_NEUCR Pre-mRNA-splicing factor slu-7 OS=Neurospora
           crassa GN=slu-7 PE=3 SV=1
          Length = 416

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -3

Query: 467 NCGKRGHLSLDCS*RQRQEISKDKGKGKLEDNDLRTTQLNLSANHPCKSF----NLLVMW 300
           NCG  GH   DC  R R+  +K  GK    D  +R  +L   A     S       + + 
Sbjct: 99  NCGAMGHKKKDCLERPRKFGAKATGKDIQADRIVRDVKLGYEAKRDVYSAYDPKQYMEVV 158

Query: 299 WVYNMLQPER 270
             YNML+  R
Sbjct: 159 EEYNMLEEAR 168


>sp|O02751|CFDP2_BOVIN Craniofacial development protein 2 OS=Bos
           taurus GN=CFDP2 PE=1 SV=2
          Length = 592

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -3

Query: 527 GDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQEISKDKGKGKLEDNDLRTTQ 354
           G+E       TK+K+ +I+    K+G LSLD    + ++ S++ G   +E  D    Q
Sbjct: 40  GEEETQKTKGTKRKAESILARKRKQGRLSLDQ--EEEEDASRESGGRIIEKEDAAAEQ 95


>sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=2
          Length = 5703

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 326 CKGGLHLDSIGSFSNHCPQACLCP 397
           C    H   +G FS HC   C+CP
Sbjct: 816 CLRSCHTLDVGCFSTHCVSGCVCP 839
tr_hit_id Q801Z9
Definition tr|Q801Z9|Q801Z9_DANRE Cellular nucleic acid-binding protein OS=Danio rerio
Align length 39
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913140|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_H08.
         (610 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q801Z9|Q801Z9_DANRE Cellular nucleic acid-binding protein OS=...    35   2.6  
tr|Q6PGX7|Q6PGX7_DANRE Zinc finger protein 9 OS=Danio rerio GN=z...    35   2.6  
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    35   2.6  
tr|A9U3P7|A9U3P7_PHYPA DNA topoisomerase OS=Physcomitrella paten...    35   3.4  
tr|Q4JGY0|Q4JGY0_HUMAN Cellular nucleic acid binding protein bet...    35   3.4  
tr|A8K7V4|A8K7V4_HUMAN cDNA FLJ77718 OS=Homo sapiens PE=2 SV=1         35   3.4  
tr|Q56N29|Q56N29_CAEV Gag polyprotein OS=Caprine arthritis encep...    35   4.4  
tr|Q0B264|Q0B264_BURCM Transcriptional regulator, LysR family OS...    34   5.8  
tr|Q23RG9|Q23RG9_TETTH Putative uncharacterized protein OS=Tetra...    34   5.8  
tr|Q6SP78|Q6SP78_9RETR Gag polyprotein (Fragment) OS=Small rumin...    33   9.8  

>tr|Q801Z9|Q801Z9_DANRE Cellular nucleic acid-binding protein
           OS=Danio rerio GN=zff9 PE=2 SV=1
          Length = 163

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 545 KVRVLKGDELAHAISETKKKSNAIITNCGKRGHLSLDCS 429
           KV+  +  E+ H   +  K +     NCGK GHL+ DCS
Sbjct: 120 KVKCYRCGEIGHVAVQCSKATEVNCYNCGKTGHLARDCS 158


>tr|Q6PGX7|Q6PGX7_DANRE Zinc finger protein 9 OS=Danio rerio GN=zff9
           PE=2 SV=1
          Length = 161

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 545 KVRVLKGDELAHAISETKKKSNAIITNCGKRGHLSLDCS 429
           KV+  +  E+ H   +  K +     NCGK GHL+ DCS
Sbjct: 118 KVKCYRCGEIGHVAVQCSKATEVNCYNCGKTGHLARDCS 156


>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
           SV=1
          Length = 1305

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 512 HAISETKKKSNAIITNCGKRGHLSLDC 432
           H  S +++K+N    NCGKRGHL  DC
Sbjct: 217 HGRSTSRRKTNLKCYNCGKRGHLKKDC 243


>tr|A9U3P7|A9U3P7_PHYPA DNA topoisomerase OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155610 PE=3 SV=1
          Length = 915

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 494 KKKSNAIITNCGKRGHLSLDCS*RQRQEISKDKGKGKLEDNDLRTTQLNLSANHPCK 324
           ++ S    TNCG+ GH ++DC   Q+  +S      +  D  +    +      PCK
Sbjct: 762 REASQRNCTNCGQSGHYNMDCPRNQQGRVSNRNQDRRRNDPSVPPASVRCDCGKPCK 818


>tr|Q4JGY0|Q4JGY0_HUMAN Cellular nucleic acid binding protein beta
           variant 2 OS=Homo sapiens GN=ZNF9 PE=2 SV=1
          Length = 172

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 584 CIIEEEVVLLSQCKVRVLKGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           C ++E+V     C     +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 60  CDLQEDVEACYNCG----RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113


>tr|A8K7V4|A8K7V4_HUMAN cDNA FLJ77718 OS=Homo sapiens PE=2 SV=1
          Length = 179

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 584 CIIEEEVVLLSQCKVRVLKGDELAHAISETKKKSNAIITNCGKRGHLSLDCS*RQRQE 411
           C ++E+V     C     +G  +A    E K++      NCGK GHL+ DC     Q+
Sbjct: 67  CDLQEDVEACYNCG----RGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 120


>tr|Q56N29|Q56N29_CAEV Gag polyprotein OS=Caprine arthritis
           encephalitis virus PE=4 SV=1
          Length = 447

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 488 KSNAIITNCGKRGHLSLDCS*RQRQEISKDKGKGK 384
           +   I  NCGKRGH+  DC  R ++E+ + +G G+
Sbjct: 402 RQGIICHNCGKRGHMQKDC--RGKKEMGRQQGNGR 434


>tr|Q0B264|Q0B264_BURCM Transcriptional regulator, LysR family
           OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
           GN=Bamb_6215 PE=4 SV=1
          Length = 321

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 183 TPLYLLQITSSTYYGRCIQTIIGRHRTTASLWLKH 287
           TPL L+  T ++Y+GRC+  ++GR   T +L L +
Sbjct: 210 TPLPLISYTETSYFGRCLALLLGRAPDTPALQLHY 244


>tr|Q23RG9|Q23RG9_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00388200 PE=4
           SV=1
          Length = 703

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
 Frame = -3

Query: 608 ERELNILSCIIEEEVVLLSQCKVRVLKG----DELAHAISETKKK---SNAIITNCG--- 459
           E+ELN  +  I++    L QCKV + KG    D++  A+ + KKK     AII       
Sbjct: 424 EKELNEKNQSIDKLEKKLEQCKVEIEKGNDVIDKIREALEKKKKKQKQKEAIILQQEQNI 483

Query: 458 KRGHLSLDCS*RQRQEISKDKGKGKLEDNDLRTTQLNL 345
           +    S+D   RQ  EI ++K   +++  +L+T   +L
Sbjct: 484 QNLQNSIDTLNRQIIEIQREKDNSEIKVKELQTANSDL 521


>tr|Q6SP78|Q6SP78_9RETR Gag polyprotein (Fragment) OS=Small ruminant
           lentivirus PE=4 SV=1
          Length = 239

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 488 KSNAIITNCGKRGHLSLDCS*RQRQEISKDKGKGK 384
           +   I  NCGK+GH+  +C  RQR+ I + +G G+
Sbjct: 194 RQGIICHNCGKKGHVQKEC--RQRKSIREKQGNGR 226