BP913153
Clone id YMU001_000027_A12
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACTGGAAGAATTCGCGGCTTGAAGGACTTCCTCTTCTCATCATCCTTGGCCTTTGTTGC
TTTCTCTTGCTCATTAGATTTAACAAGGCATCCTNTGGCAAAAAAAGTCTCTTTTGACCA
AACCTTCTCCCAGTCATCTCCACGCATGGCACTATTTCTGAAAGTAAGATCGACAGAGTA
ATAACGTATCCTCGGGCTGTCATCAATGATGCTTTTGTTGATATTTTTTACGCGGCAGGT
TATCATCATTCCCAGAGGAGCTTGTTGATGATCAGCAGTAGCGTCATCAGAGAAATCATC
TTTCTGTATAAAACCAGTAAGGCCATTGCCCAATTCACATCTTATCCCTCGCTCTAAGAC
TCCCACAACTTTCACAGTCACTACCCTTCCAGCGCCCAAGGTTTGCTCTGTCTCCCCAGT
TAGCAAAGTGAAGATTCCATCATCAGACGGAGGGGAGTAGG
■■Homology search results ■■ -
sp_hit_id Q62383
Definition sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6 OS=Mus musculus
Align length 104
Score (bit) 43.9
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913153|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_A12.
(442 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6 OS=Mu... 44 3e-04
sp|Q7KZ85|SPT6H_HUMAN Transcription elongation factor SPT6 OS=Ho... 44 3e-04
sp|Q8UVK2|SPT6H_DANRE Transcription elongation factor SPT6 OS=Da... 38 0.016
sp|Q7RTY7|OVCH1_HUMAN Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2... 31 2.0
sp|P34703|SPT6H_CAEEL Suppressor of Ty 6 homolog OS=Caenorhabdit... 30 4.4
sp|Q49V08|GLMU_STAS1 Bifunctional protein glmU OS=Staphylococcus... 30 4.4
sp|A3MYM1|NFUA_ACTP2 Fe/S biogenesis protein nfuA OS=Actinobacil... 29 9.8

>sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6 OS=Mus
musculus GN=Supt6h PE=2 SV=2
Length = 1726

Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDAT-ADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G++ L NG+TGFI SD ++ +GM + CR+ I+ I +S
Sbjct: 1227 GVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKID---------IEKFSA 1277

Query: 152 DLTFRNSAM--RGDDWEKVWSKETFFAXGCLVKSNEQEKATKAK 27
DLT R S + R ++W+ K+T++ ++QE+ K K
Sbjct: 1278 DLTCRTSDLMDRNNEWK--LPKDTYYDFDAEAADHKQEEDMKRK 1319


>sp|Q7KZ85|SPT6H_HUMAN Transcription elongation factor SPT6 OS=Homo
sapiens GN=SUPT6H PE=1 SV=2
Length = 1726

Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDAT-ADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G++ L NG+TGFI SD ++ +GM + CR+ I+ I +S
Sbjct: 1227 GVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKID---------IEKFSA 1277

Query: 152 DLTFRNSAM--RGDDWEKVWSKETFFAXGCLVKSNEQEKATKAK 27
DLT R S + R ++W+ K+T++ ++QE+ K K
Sbjct: 1278 DLTCRTSDLMDRNNEWK--LPKDTYYDFDAEAADHKQEEDMKRK 1319


>sp|Q8UVK2|SPT6H_DANRE Transcription elongation factor SPT6 OS=Danio
rerio GN=supt6h PE=1 SV=1
Length = 1726

Score = 38.1 bits (87), Expect = 0.016
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDATAD-HQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G+R L N + GFI SD ++ GM + CR+ I+ I ++V
Sbjct: 1218 GVRTRLDNAVMGFIPTKFLSDKVVKHPEERVKPGMTVHCRIMKID---------IEKFNV 1268

Query: 152 DLTFRNSAMRGDDWEKVWSKETFFAXGCLVKSNEQEKATKAK 27
DLT R S + + E K+T++ +QE+ K K
Sbjct: 1269 DLTCRTSDLSDKNNEWKLPKDTYYDFDAETDDVKQEEEQKKK 1310


>sp|Q7RTY7|OVCH1_HUMAN Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2
SV=2
Length = 1134

Score = 31.2 bits (69), Expect = 2.0
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -3

Query: 239 PLGMMITCRVKNINKSIIDDSPRIRYYSVDLTFRNSAMRGDDWE-KVWSKETFFAXGCLV 63
P + + C ++ +N + + R++S ++RNS + G W+ + S E F G L+
Sbjct: 18 PRSLGLKCGIRMVNMKSKEPAVGSRFFSRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLI 77

Query: 62 KSNEQEKATKAKDDEKRK 9
+ + A D K
Sbjct: 78 QEDRVVTAAHCLDSLSEK 95


>sp|P34703|SPT6H_CAEEL Suppressor of Ty 6 homolog OS=Caenorhabditis
elegans GN=emb-5 PE=1 SV=1
Length = 1521

Score = 30.0 bits (66), Expect = 4.4
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDATADHQQAPLGMMITCRVKNINKSIIDDSPRI--RYYS 156
GIR NG+TGF + S + H PL RVK IN+ ++ +S
Sbjct: 1197 GIRVRFDNGMTGFCPNKNIS----SSHVDNPL-----TRVK-INQPYYFKVLKLDKERFS 1246

Query: 155 VDLTFRNSAMRGDDW---EKVWSKETFFAXGCLVKSNEQEKATKAKDDEKR 12
+ L+ ++S ++ DD ++ W + + A L+KS E +K T+A KR
Sbjct: 1247 LFLSCKSSDLKEDDLSQRDQYWDEHQYQADLELMKS-ESKKKTEANTRVKR 1296


>sp|Q49V08|GLMU_STAS1 Bifunctional protein glmU OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=glmU PE=3 SV=1
Length = 451

Score = 30.0 bits (66), Expect = 4.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3

Query: 114 VISTHGTISESKIDRVITYPRAVINDAFVDIFYAAG 221
VI H I+ SKI +T ++VIN+A VD + G
Sbjct: 291 VIGQHTEITNSKIGSNVTIKQSVINEAIVDDYATIG 326


>sp|A3MYM1|NFUA_ACTP2 Fe/S biogenesis protein nfuA OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=nfuA PE=3
SV=1
Length = 199

Score = 28.9 bits (63), Expect = 9.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3

Query: 308 NGLTGFIQKDD--FSDDATADHQQAPLGMMITCRVKNIN-KSIIDDSPRI 168
NG + F+ + F D+A D+ P+G +T + N + + DD+P I
Sbjct: 66 NGFSAFVDEISLPFLDEAEIDYVTDPMGSQLTLKAPNAKMRKVADDAPFI 115


tr_hit_id A9RRH2
Definition tr|A9RRH2|A9RRH2_PHYPA Transcription elongation factor SPT6 (Fragment) OS=Physcomitrella patens subsp. patens
Align length 147
Score (bit) 68.6
E-value 2.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913153|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_A12.
(442 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RRH2|A9RRH2_PHYPA Transcription elongation factor SPT6 (Fra... 69 2e-10
tr|A9RR56|A9RR56_PHYPA Transcription elongation factor SPT6 (Fra... 52 1e-05
tr|A7PTE3|A7PTE3_VITVI Chromosome chr8 scaffold_29, whole genome... 49 2e-04
tr|Q2HUT6|Q2HUT6_MEDTR SH2 motif; Alcohol dehydrogenase, zinc-co... 46 0.001
tr|A4S671|A4S671_OSTLU Predicted protein OS=Ostreococcus lucimar... 45 0.001
tr|Q3TY72|Q3TY72_MOUSE Putative uncharacterized protein OS=Mus m... 44 0.004
tr|A7E2B4|A7E2B4_HUMAN Suppressor of Ty 6 homolog (S. cerevisiae... 44 0.004
tr|O80815|O80815_ARATH T8F5.22 protein OS=Arabidopsis thaliana G... 42 0.012
tr|A8MS85|A8MS85_ARATH Uncharacterized protein At1g65440.1 OS=Ar... 42 0.012
tr|Q4RRW0|Q4RRW0_TETNG Chromosome 7 SCAF15001, whole genome shot... 42 0.015
tr|Q86L01|Q86L01_DICDI Putative uncharacterized protein OS=Dicty... 40 0.075
tr|Q55A48|Q55A48_DICDI SH2 domain-containing protein OS=Dictyost... 40 0.075
tr|B3S561|B3S561_TRIAD Putative uncharacterized protein OS=Trich... 40 0.075
tr|B7Q0Q9|B7Q0Q9_IXOSC S1 RNA binding domain-containing protein,... 35 1.4
tr|A7SRR7|A7SRR7_NEMVE Predicted protein OS=Nematostella vectens... 35 1.9
tr|Q00XE3|Q00XE3_OSTTA Glycine-rich protein (ISS) OS=Ostreococcu... 34 4.1
tr|B6IUP5|B6IUP5_RHOCS Ribosomal protein S1 OS=Rhodospirillum ce... 33 5.4
tr|A8TND0|A8TND0_9PROT Ribosomal protein S1 OS=alpha proteobacte... 33 5.4

>tr|A9RRH2|A9RRH2_PHYPA Transcription elongation factor SPT6
(Fragment) OS=Physcomitrella patens subsp. patens
GN=GTB1501 PE=4 SV=1
Length = 1235

Score = 68.6 bits (166), Expect = 2e-10
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 1/147 (0%)
Frame = -3

Query: 440 YSPPSDDGIFXXXXXXXXXXXGAGRXXXXXXXXVLERGIRCELGNGLTGFIQKDDFSDDA 261
Y+ PS++ F GR V + + C L +GL FIQK+D SDD
Sbjct: 904 YAEPSEEEKFYMLSGETEETLSCGRIVNATVRNVQQNRVMCVLESGLLAFIQKEDLSDDR 963

Query: 260 TAD-HQQAPLGMMITCRVKNINKSIIDDSPRIRYYSVDLTFRNSAMRGDDWEKVWSKETF 84
+ + G ++TCRVK + ++ + VDLT + S +R + W + +
Sbjct: 964 DVEPSDKVSEGSIVTCRVKEV---------KLAKFLVDLTCKGSDLRAEHWRPRVQPDPY 1014

Query: 83 FAXGCLVKSNEQEKATKAKDDEKRKSF 3
+ EQ+K K K++EK+K+F
Sbjct: 1015 YQPDTTFLQREQDKVRKKKEEEKKKAF 1041


>tr|A9RR56|A9RR56_PHYPA Transcription elongation factor SPT6
(Fragment) OS=Physcomitrella patens subsp. patens
GN=GTB1502 PE=4 SV=1
Length = 1249

Score = 52.0 bits (123), Expect = 1e-05
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Frame = -3

Query: 440 YSPPSDDGIFXXXXXXXXXXXGAGRXXXXXXXXVLERGIRCELGNGLTGFIQKDDFSDDA 261
Y PS + F GR V + + C L +GL GFI K+D SD
Sbjct: 921 YLEPSKEECFYLMSGEREETLFPGRIVQATIRKVQDNQVMCVLESGLVGFIYKEDLSDHC 980

Query: 260 TAD-HQQAPLGMMITCRVKNINKSIIDDSPRIRYYSVDLTFRNSAMRGDDWEKVWSKETF 84
A+ ++ G ++TCRVKN+N + + + LT + S R D + + +
Sbjct: 981 DAEPKERITEGSLVTCRVKNVN---------MEKFLIYLTCKESDFRRDFYGDLHHDD-- 1029

Query: 83 FAXGCLVKSNEQEKATKAKDDEKRKSF 3
+EQEK K +D+ +K+F
Sbjct: 1030 --KPKTTLLSEQEKIRKENEDQHKKTF 1054


>tr|A7PTE3|A7PTE3_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023321001
PE=4 SV=1
Length = 1577

Score = 48.5 bits (114), Expect = 2e-04
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Frame = -3

Query: 440 YSPPSDDGIFXXXXXXXXXXXGAGRXXXXXXXXVLERGIRCELGNGLTGFIQKDDFSDD- 264
Y P+ D F GR V + C L +GLTG + K+D+SDD
Sbjct: 980 YEEPTQDEEFYMVTGETEDTLAEGRIVQATIRKVQAQRAICMLESGLTGMLAKEDYSDDW 1039

Query: 263 ------ATADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSVDLTFRNSAMRGDDWEKV 102
+ + H+ G M+TC++K I K+ + V L + S MR + ++
Sbjct: 1040 RDISDLSDSMHE----GDMLTCKIKTIQKN---------RFQVFLVCKESEMRSNRYQNA 1086

Query: 101 WSKETFFAXGCLVKSNEQEKATKAKDDEKR 12
+ + ++ +EQEKA K K+ K+
Sbjct: 1087 PNLDPYYREDRSSLQSEQEKARKEKELAKK 1116


>tr|Q2HUT6|Q2HUT6_MEDTR SH2 motif; Alcohol dehydrogenase,
zinc-containing; Resolvase, RNase H-like fold; Nucleic
acid-binding, OB-fold, subgroup OS=Medicago truncatula
GN=MtrDRAFT_AC149050g22v1 PE=4 SV=1
Length = 1640

Score = 45.8 bits (107), Expect = 0.001
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Frame = -3

Query: 440 YSPPSDDGIFXXXXXXXXXXXGAGRXXXXXXXXVLERGIRCELGNGLTGFIQKDDFSD-- 267
Y PS D F G+ V + C L +G+TG + K+D++D
Sbjct: 1107 YEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDW 1166

Query: 266 -DATADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSVDLTFRNSAMRGDDWEKVWSKE 90
D + G M+TC++K+I K+ Y V L ++S MR D + +
Sbjct: 1167 RDIIELSDRLHEGDMLTCKIKSIQKN---------RYQVFLVCKDSEMRSDRLQNNQDLD 1217

Query: 89 TFFAXGCLVKSNEQEKATKAKDDEKR 12
++ +EQ+K K K+ K+
Sbjct: 1218 PYYHEDQSCLPSEQDKTRKEKERAKK 1243


>tr|A4S671|A4S671_OSTLU Predicted protein OS=Ostreococcus lucimarinus
(strain CCE9901) GN=GTB3501 PE=4 SV=1
Length = 1245

Score = 45.4 bits (106), Expect = 0.001
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Frame = -3

Query: 332 RGIR--CELGNGLTGFIQKDDFSDDATAD--HQQAPLGMMITCRVKNINKSIIDDSPRIR 165
RG R C L +GLTG+++K D SDD + ++ LG +IT RVK D +
Sbjct: 922 RGARAVCTLDSGLTGYVEKYDVSDDQSFSRIEEKVALGQVITARVK-------PDGVDVH 974

Query: 164 YYSVDLTFRNSAMRGDD---WEKVWSKETFFAXGCLVK--SNEQEKATKAKDDEKRKSF 3
+SV L +SA+ D+ WE+ +VK + K K+K D ++++F
Sbjct: 975 NFSVQLACSSSALHPDETLQWEQHLHYTEANGYYSMVKQPGEVRLKKQKSKKDMQKRTF 1033


>tr|Q3TY72|Q3TY72_MOUSE Putative uncharacterized protein OS=Mus
musculus GN=Supt6h PE=2 SV=1
Length = 658

Score = 43.9 bits (102), Expect = 0.004
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDAT-ADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G++ L NG+TGFI SD ++ +GM + CR+ I+ I +S
Sbjct: 159 GVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKID---------IEKFSA 209

Query: 152 DLTFRNSAM--RGDDWEKVWSKETFFAXGCLVKSNEQEKATKAK 27
DLT R S + R ++W+ K+T++ ++QE+ K K
Sbjct: 210 DLTCRTSDLMDRNNEWK--LPKDTYYDFDAEAADHKQEEDMKRK 251


>tr|A7E2B4|A7E2B4_HUMAN Suppressor of Ty 6 homolog (S. cerevisiae)
OS=Homo sapiens GN=SUPT6H PE=2 SV=1
Length = 1726

Score = 43.9 bits (102), Expect = 0.004
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDAT-ADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G++ L NG+TGFI SD ++ +GM + CR+ I+ I +S
Sbjct: 1227 GVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKID---------IEKFSA 1277

Query: 152 DLTFRNSAM--RGDDWEKVWSKETFFAXGCLVKSNEQEKATKAK 27
DLT R S + R ++W+ K+T++ ++QE+ K K
Sbjct: 1278 DLTCRTSDLMDRNNEWK--LPKDTYYDFDAEAADHKQEEDMKRK 1319


>tr|O80815|O80815_ARATH T8F5.22 protein OS=Arabidopsis thaliana
GN=T8F5.22 PE=4 SV=1
Length = 1684

Score = 42.4 bits (98), Expect = 0.012
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Frame = -3

Query: 320 CELGNGLTGFIQKDDFSDDA-----TADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYS 156
C L +GLTG + K+DFSDD AD Q G ++TC++K+I K + Y
Sbjct: 1157 CVLDSGLTGMLMKEDFSDDGRDIVDLAD--QLKEGDILTCKIKSIQK---------QRYQ 1205

Query: 155 VDLTFRNSAMRGDDWEKVWSKETFFAXGCLVKSNEQEKATKAKD 24
V L + S MR + + + + ++ +EKA K K+
Sbjct: 1206 VFLICKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKE 1249


>tr|A8MS85|A8MS85_ARATH Uncharacterized protein At1g65440.1
OS=Arabidopsis thaliana GN=At1g65440 PE=4 SV=1
Length = 1647

Score = 42.4 bits (98), Expect = 0.012
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Frame = -3

Query: 320 CELGNGLTGFIQKDDFSDDA-----TADHQQAPLGMMITCRVKNINKSIIDDSPRIRYYS 156
C L +GLTG + K+DFSDD AD Q G ++TC++K+I K + Y
Sbjct: 1120 CVLDSGLTGMLMKEDFSDDGRDIVDLAD--QLKEGDILTCKIKSIQK---------QRYQ 1168

Query: 155 VDLTFRNSAMRGDDWEKVWSKETFFAXGCLVKSNEQEKATKAKD 24
V L + S MR + + + + ++ +EKA K K+
Sbjct: 1169 VFLICKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKE 1212


>tr|Q4RRW0|Q4RRW0_TETNG Chromosome 7 SCAF15001, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00029979001 PE=4 SV=1
Length = 1671

Score = 42.0 bits (97), Expect = 0.015
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = -3

Query: 329 GIRCELGNGLTGFIQKDDFSDDATA-DHQQAPLGMMITCRVKNINKSIIDDSPRIRYYSV 153
G+R L NG+ GFI SD ++ +GM + CR+ I+ I +SV
Sbjct: 1071 GVRSRLDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKID---------IEKFSV 1121

Query: 152 DLTFRNSAMRGDDWEKVWSKETFFAXGCLVKSNEQEKATKAKDDEKRK 9
DLT R S + E K++++ + +Q++ K K R+
Sbjct: 1122 DLTCRTSDLMDKANEWKLPKDSYYDFDTESEDQKQDEELKKKQQRTRQ 1169