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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913157
Clone id YMU001_000027_B04
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCATAGATTTAACAACCAACCTGGTTAATAGTGGACTTGATTGGAATAAACTTACAAAG
TTTAAGCAATCTATCTAAATCATCCACATCGAAGCATTACCCCTTAGAGCTCAATAATCA
AAAACCAACATGAAAGCTCTAAAAGGTACTCAACTAAACAACACCGAATCATTTTGAGAA
CTTGCTCTACGCAGTTTTTACAAACCAACTCTTTTGCATAATGCACAACTTCTTCGGGGC
TTAATCTTGCATCCAAGAGTATAACATCGTCCTCCTTTTCGCTGATTGCTAAAGAATCTA
CCTGTGACAATAACAAAGCCGGAGGCATGAAGTGGATCCCTTGTTGGAACCTCTCTTTAA
CTCGTGAAGCAAAGAGCTCTATCGGTCCGTTCAATAAAAGAAAAGTCACTCGATGCGATG
GACTGTGTGATTCGCGGTTGCCTTTAATCTGTTGATTGCCATACAACTCTTTAGACTTTC
TAGAGAATGACTTCAAACTATCGCTTATCCAGCTTGTTT
■■Homology search results ■■ -
sp_hit_id P39208
Definition sp|P39208|IDNK_ECOLI Thermosensitive gluconokinase OS=Escherichia coli (strain K12)
Align length 73
Score (bit) 34.3
E-value 0.36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913157|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B04.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39208|IDNK_ECOLI Thermosensitive gluconokinase OS=Escherichi...    34   0.36 
sp|B0BML1|GNTK_XENTR Probable gluconokinase OS=Xenopus tropicali...    34   0.47 
sp|P32524|PRP21_YEAST Pre-mRNA-splicing factor PRP21 OS=Saccharo...    33   1.0  
sp|Q5T6J7|GNTK_HUMAN Probable gluconokinase OS=Homo sapiens GN=C...    32   2.3  
sp|P41368|SYI2_STAAU Isoleucyl-tRNA synthetase OS=Staphylococcus...    30   5.2  
sp|Q9X242|RSGA_THEMA Putative ribosome biogenesis GTPase rsgA OS...    30   5.2  
sp|Q9ZMW2|HRCA_HELPJ Heat-inducible transcription repressor hrcA...    30   5.2  
sp|Q758N7|RPC3_ASHGO DNA-directed RNA polymerase III subunit RPC...    30   6.8  

>sp|P39208|IDNK_ECOLI Thermosensitive gluconokinase OS=Escherichia
           coli (strain K12) GN=idnK PE=3 SV=1
          Length = 187

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 418 SHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISE-KEDDVILLDARL 242
           S  V FL L+G  E   +R++ R     HFMP ALL SQ ++L   +  E D++ +D   
Sbjct: 97  SPHVHFLWLDGDYETILARMQRRAG---HFMPVALLKSQFEALERPQADEQDIVRIDINH 153

Query: 241 SPEEVVHYAKELV 203
               V    ++ V
Sbjct: 154 DIANVTEQCRQAV 166


>sp|B0BML1|GNTK_XENTR Probable gluconokinase OS=Xenopus tropicalis
           PE=2 SV=1
          Length = 190

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = -3

Query: 436 RESHSPSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVIL 257
           +E+   S    F+ L+G +E+ + R+ ER  +G HFMP  LL SQ+D+L      +  I 
Sbjct: 103 QENDDLSSDTLFVHLHGSLEILSRRLLER--KG-HFMPRTLLDSQIDTLEPPSAPERFIA 159

Query: 256 LD 251
           +D
Sbjct: 160 ID 161


>sp|P32524|PRP21_YEAST Pre-mRNA-splicing factor PRP21
           OS=Saccharomyces cerevisiae GN=PRP21 PE=1 SV=1
          Length = 280

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 26/82 (31%), Positives = 40/82 (48%)
 Frame = -3

Query: 421 PSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVILLDARL 242
           P H     L+N P +  +    +R  +     PP  L SQ D+  IS ++ +VI L AR 
Sbjct: 44  PLHEYYTKLMNEPTDTVSGEDNDRKSEREIARPPDFLFSQYDT-GISRRDMEVIKLTAR- 101

Query: 241 SPEEVVHYAKELVCKNCVEQVL 176
                 +YAK+   K+ VEQ++
Sbjct: 102 ------YYAKD---KSIVEQMI 114


>sp|Q5T6J7|GNTK_HUMAN Probable gluconokinase OS=Homo sapiens
           GN=C9orf103 PE=2 SV=1
          Length = 187

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = -3

Query: 445 KGNRESHSPSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDD 266
           +  +E+     ++  + L+G  E+ + R+ +R  +G HFMPP LL SQ ++L      ++
Sbjct: 107 ESGKEAKQAEMQLLVVHLSGSFEVISGRLLKR--EG-HFMPPELLQSQFETLEPPAAPEN 163

Query: 265 VILLDARLSPEEVV 224
            I +    +  E++
Sbjct: 164 FIQISVDKNVSEII 177


>sp|P41368|SYI2_STAAU Isoleucyl-tRNA synthetase OS=Staphylococcus
            aureus GN=ileS PE=3 SV=1
          Length = 1024

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 298  DSLAISEKEDDVILLDARLSPEEVVH-YAKELV 203
            DS  +SE  D VILLD  LSPE +   +A+EL+
Sbjct: 919  DSYQLSEDNDCVILLDKNLSPELIREGHARELI 951


>sp|Q9X242|RSGA_THEMA Putative ribosome biogenesis GTPase rsgA
           OS=Thermotoga maritima GN=rsgA PE=1 SV=1
          Length = 295

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -3

Query: 394 LNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVILLDARLSPEEVVHYA 215
           +N  ++L  S V E+ Q+G H    A LL       + +      L    + PEE+ HY 
Sbjct: 183 INPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 242

Query: 214 KELVCKNC 191
           KE   K C
Sbjct: 243 KEFGDKQC 250


>sp|Q9ZMW2|HRCA_HELPJ Heat-inducible transcription repressor hrcA
           OS=Helicobacter pylori J99 GN=hrcA PE=3 SV=1
          Length = 266

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 397 LLNGPI--ELFASRVKERFQQGIHFMPPALLL 308
           LLN P+  ++   +V ERF++G+HF+ P  +L
Sbjct: 200 LLNSPLFFDILEGKVLERFKKGLHFIEPDCML 231


>sp|Q758N7|RPC3_ASHGO DNA-directed RNA polymerase III subunit RPC3
           OS=Ashbya gossypii GN=RPC82 PE=3 SV=1
          Length = 636

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 325 PPALLLSQVDSLAISEKEDDVILL---DARLSPEEVVHYAKELVCKNCVEQVLKMIRCCL 155
           P   L ++V    + E+   VI L     RLS  E+VH A EL  K+    ++ +I+   
Sbjct: 32  PETFLYTEVARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRC 91

Query: 154 VEYLLE 137
           V+YL E
Sbjct: 92  VQYLEE 97
tr_hit_id B8B1L6
Definition tr|B8B1L6|B8B1L6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 98
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913157|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B04.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8B1L6|B8B1L6_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A7PBF3|A7PBF3_VITVI Chromosome chr16 scaffold_10, whole genom...    56   1e-06
tr|A3B7R2|A3B7R2_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A5BY26|A5BY26_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|Q9SLE0|Q9SLE0_ARATH Putative gluconokinase OS=Arabidopsis tha...    51   3e-05
tr|Q8LDN6|Q8LDN6_ARATH Putative gluconokinase OS=Arabidopsis tha...    51   3e-05
tr|B3H6H9|B3H6H9_ARATH Uncharacterized protein At2g16790.2 OS=Ar...    51   3e-05
tr|A1SYR9|A1SYR9_PSYIN Gluconate kinase OS=Psychromonas ingraham...    49   2e-04
tr|A3TPB6|A3TPB6_9MICO Carbohydrate kinase, thermoresistant gluc...    47   7e-04
tr|B6JBY5|B6JBY5_OLICO Shikimate kinase OS=Oligotropha carboxido...    45   0.002
tr|B5S8D1|B5S8D1_RALSO Thermoresistant gluconokinase (Gluconate ...    45   0.002
tr|B5SG21|B5SG21_RALSO Thermoresistant gluconokinase (Gluconate ...    44   0.004
tr|A3RRJ4|A3RRJ4_RALSO Gluconokinase OS=Ralstonia solanacearum U...    44   0.004
tr|A9SF64|A9SF64_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|Q47N22|Q47N22_THEFY Gluconate kinase OS=Thermobifida fusca (s...    44   0.006
tr|B8HE91|B8HE91_9MICC Carbohydrate kinase, thermoresistant gluc...    42   0.024
tr|A4FF06|A4FF06_SACEN Carbohydrate kinase, thermoresistant gluc...    41   0.031
tr|B8LWE7|B8LWE7_9EURO Thermoresistant gluconokinase family prot...    41   0.031
tr|A0NZF7|A0NZF7_9RHOB Gluconokinase protein OS=Labrenzia aggreg...    41   0.041
tr|Q9CMM6|Q9CMM6_PASMU Glk OS=Pasteurella multocida GN=glk PE=4 ...    40   0.053
tr|B2JGW5|B2JGW5_BURP8 Carbohydrate kinase, thermoresistant gluc...    40   0.053
tr|Q473H3|Q473H3_RALEJ Gluconate kinase OS=Ralstonia eutropha (s...    40   0.070
tr|B0V4S8|B0V4S8_ACIBY Thermoresistant gluconokinase (Gluconate ...    40   0.070
tr|A9CKL0|A9CKL0_AGRT5 Gluconokinase OS=Agrobacterium tumefacien...    40   0.070
tr|B7I5F3|B7I5F3_ACIBA Shikimate kinase OS=Acinetobacter baumann...    40   0.070
tr|B7H083|B7H083_ACIBA Thermosensitive gluconokinase(Gluconate k...    40   0.070
tr|B7GPP2|B7GPP2_BIFLO 6-phosphogluconate dehydrogenase, decarbo...    40   0.091
tr|Q8DDA5|Q8DDA5_VIBVU Thermoresistant gluconokinase OS=Vibrio v...    39   0.12 
tr|B2I3D1|B2I3D1_ACIBC Gluconate kinase OS=Acinetobacter baumann...    39   0.12 
tr|B0VKT5|B0VKT5_ACIBS Thermoresistant gluconokinase (Gluconate ...    39   0.12 

>tr|B8B1L6|B8B1L6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21375 PE=4 SV=1
          Length = 617

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
 Frame = -3

Query: 508 ISDSLKSFSRKSKELY--GNQQIKGNRESHSPSHRVTFLLLNGPIELFASRVKERFQQGI 335
           ++ S  +  +K +E+   G+   +    S+S S RV F+ L    E+ A R++ R  +G 
Sbjct: 507 VAVSCSALQQKYREILREGDCSFRSGSGSYS-SCRVKFVCLEASAEVIADRIRRRSMEGE 565

Query: 334 HFMPPALLLSQVDSLAISEKEDDVILLDARLSPEEVVH 221
           HFMP +LL SQ+D L I E E  + ++DA + P  +VH
Sbjct: 566 HFMPASLLQSQLDLLQIDEAE-GITVVDATVRPNAIVH 602


>tr|A7PBF3|A7PBF3_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014074001
           PE=4 SV=1
          Length = 174

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 31/79 (39%), Positives = 49/79 (62%)
 Frame = -3

Query: 439 NRESHSPSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVI 260
           N E  S    V F+LL+   E+ A+R+++R  +G HFMPP LL SQ+DSL +   E  ++
Sbjct: 96  NYEHGSFESMVKFVLLDARAEVIAARLEKRAAEGNHFMPPNLLQSQLDSLQLDPSE-GIL 154

Query: 259 LLDARLSPEEVVHYAKELV 203
            +DA  SP++ V+  + L+
Sbjct: 155 KVDATQSPDDTVNGIQALI 173


>tr|A3B7R2|A3B7R2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019084 PE=4 SV=1
          Length = 600

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
 Frame = -3

Query: 508 ISDSLKSFSRKSKELY--GNQQIKGNRESHSPSHRVTFLLLNGPIELFASRVKERFQQGI 335
           ++ S  +  +K +E+   G+   +    S+S S RV F+ L    E+ A R++ R  +G 
Sbjct: 490 VAVSCSALQQKYREILREGDCSFRSGSGSYS-SCRVKFVCLEASAEVIADRIRRRSMEGE 548

Query: 334 HFMPPALLLSQVDSLAISEKEDDVILLDARLSPEEVVH 221
           HFMP +LL SQ+D L I E E  + ++DA + P  +VH
Sbjct: 549 HFMPASLLQSQLDLLQIDEAE-GITVVDATVRPNAIVH 585


>tr|A5BY26|A5BY26_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019218 PE=4 SV=1
          Length = 174

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 30/79 (37%), Positives = 48/79 (60%)
 Frame = -3

Query: 439 NRESHSPSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVI 260
           N E  S    V F+LL+   E+ A+R+++R  +G HFMPP  L SQ+DSL +   E  ++
Sbjct: 96  NYEHGSFESMVKFVLLDARAEVIAARLEKRAAEGNHFMPPNXLQSQLDSLQLDPSE-GIL 154

Query: 259 LLDARLSPEEVVHYAKELV 203
            +DA  SP++ V+  + L+
Sbjct: 155 KVDATQSPDDTVNGIQALI 173


>tr|Q9SLE0|Q9SLE0_ARATH Putative gluconokinase OS=Arabidopsis
           thaliana GN=At2g16790 PE=2 SV=2
          Length = 189

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = -3

Query: 448 IKGNRESHSP----SHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAIS 281
           ++G+   + P    S +VTF+LL G  E+ A+R+++R  +  HFMP  LL SQ D L   
Sbjct: 99  LRGSDPDYKPGSYTSCKVTFVLLEGNAEVIAARLQKRASEEEHFMPLTLLQSQFDLLQAD 158

Query: 280 EKEDDVILLDARLSPEEVVHYAKELVCKN 194
           E E  +  +   LSPE +V+   E+V  +
Sbjct: 159 ECE-KIFKISVVLSPEVIVNTILEMVANS 186


>tr|Q8LDN6|Q8LDN6_ARATH Putative gluconokinase OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 189

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = -3

Query: 448 IKGNRESHSP----SHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAIS 281
           ++G+   + P    S +VTF+LL G  E+ A+R+++R  +  HFMP  LL SQ D L   
Sbjct: 99  LRGSDPDYKPGSYTSCKVTFVLLEGNAEVIAARLQKRASEEEHFMPLTLLQSQFDLLQAD 158

Query: 280 EKEDDVILLDARLSPEEVVHYAKELVCKN 194
           E E  +  +   LSPE +V+   E+V  +
Sbjct: 159 ECE-KIFKISVVLSPEVIVNTILEMVANS 186


>tr|B3H6H9|B3H6H9_ARATH Uncharacterized protein At2g16790.2
           OS=Arabidopsis thaliana GN=At2g16790 PE=4 SV=1
          Length = 187

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = -3

Query: 448 IKGNRESHSP----SHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAIS 281
           ++G+   + P    S +VTF+LL G  E+ A+R+++R  +  HFMP  LL SQ D L   
Sbjct: 97  LRGSDPDYKPGSYTSCKVTFVLLEGNAEVIAARLQKRASEEEHFMPLTLLQSQFDLLQAD 156

Query: 280 EKEDDVILLDARLSPEEVVHYAKELVCKN 194
           E E  +  +   LSPE +V+   E+V  +
Sbjct: 157 ECE-KIFKISVVLSPEVIVNTILEMVANS 184


>tr|A1SYR9|A1SYR9_PSYIN Gluconate kinase OS=Psychromonas ingrahamii
           (strain 37) GN=Ping_2932 PE=4 SV=1
          Length = 174

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = -3

Query: 418 SHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAI-SEKEDDVILLDARL 242
           +H+VTFLLL G  EL   R+  R     HFMP ALL SQ D+L +  E E ++I +D   
Sbjct: 101 NHQVTFLLLYGEFELVLKRMLARKN---HFMPTALLKSQFDALELPQEDEKNIIKIDIDG 157

Query: 241 SPEEVV 224
           S EEVV
Sbjct: 158 SFEEVV 163


>tr|A3TPB6|A3TPB6_9MICO Carbohydrate kinase, thermoresistant
           glucokinase OS=Janibacter sp. HTCC2649 GN=JNB_15458 PE=4
           SV=1
          Length = 177

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 27/65 (41%), Positives = 41/65 (63%)
 Frame = -3

Query: 409 VTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDSLAISEKEDDVILLDARLSPEE 230
           V FL L+GP E+   R+ +R  +G HFMP +LL SQ+ +L   E ++  I+LD R  PE+
Sbjct: 103 VDFLHLDGPAEVIKGRMSKR--EG-HFMPASLLQSQLATLEALEPDESGIVLDLRQPPEQ 159

Query: 229 VVHYA 215
           ++  A
Sbjct: 160 LIERA 164


>tr|B6JBY5|B6JBY5_OLICO Shikimate kinase OS=Oligotropha
           carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
           GN=aroK PE=4 SV=1
          Length = 180

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 29/83 (34%), Positives = 43/83 (51%)
 Frame = -3

Query: 472 KELYGNQQIKGNRESHSPSHRVTFLLLNGPIELFASRVKERFQQGIHFMPPALLLSQVDS 293
           K +Y    + G ++       V  + L G +EL A R+K R   G HFMPPALL SQ+ +
Sbjct: 90  KRVYRTLLVHGRKD-------VRIVFLQGSVELIAQRLKRR---GGHFMPPALLESQLKT 139

Query: 292 LAISEKEDDVILLDARLSPEEVV 224
           L   + ++  I +D   S E +V
Sbjct: 140 LEPPQPDEFAISVDIDASVERIV 162