NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913159
Clone id YMU001_000027_B06
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGGAAAACAGATGGGAGTGAGTAATCGATAATGAAGATGATACAGAAGAAACAACTAAC
ATCACCAAGCAATTACAAGAGGGGACCACAAGATGACAAGCAGAGCACTGCACAAGGAGC
TGTCAACTACGATAGAGACCAATCCGATTGACGAAGGTGGCTCCTGAAATCCATAACTAG
GTAGGGAACTCTAAGAAGGTAGTGAAGAAGGCTCTCGTAACAGCCAAGTGATATCCTGCT
GTAGGAACCTCATAGAGAGAGCAGAGCAGCAACGCAGAAACCAAGACCAAACCAAACAGA
AAACAAAAAACAACAAAGACGCAAACAACAAAGCAAAAGAAAATCAAACCAAAAAGACTG
ACCTTTACCTTCCTACACACACACACACACATACACACACTCAGAAGCCACTCCATGAGA
ACAAAAATAAAGCATACTAATCCACCCACCCAAACATACATGCACACACCAAGCAAGAAA
GCATGCAAAAACAAGCAACCAGACAACAAACAAGATAAATCAACAAAGCAAATACCCACA
AAGCTAAAAGATATCCCAGTAGATGATTCAAACAAGCAAATCATAGAGCAGCTCTTCCGA
TCC
■■Homology search results ■■ -
sp_hit_id Q15077
Definition sp|Q15077|P2RY6_HUMAN P2Y purinoceptor 6 OS=Homo sapiens
Align length 38
Score (bit) 31.2
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913159|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B06.
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15077|P2RY6_HUMAN P2Y purinoceptor 6 OS=Homo sapiens GN=P2RY...    31   4.2  
sp|P26552|VE5_HPV58 Probable protein E5 OS=Human papillomavirus ...    31   5.5  
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv...    31   5.5  
sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channe...    30   9.5  
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ...    30   9.5  
sp|Q5HIB2|SDRE_STAAC Serine-aspartate repeat-containing protein ...    30   9.5  
sp|P16039|NPM_CHICK Nucleophosmin OS=Gallus gallus GN=NPM1 PE=2 ...    30   9.5  
sp|Q8A9B8|HTPG_BACTN Chaperone protein htpG OS=Bacteroides theta...    30   9.5  
sp|O01352|DJ_DROME Sperm-specific protein Don juan OS=Drosophila...    30   9.5  

>sp|Q15077|P2RY6_HUMAN P2Y purinoceptor 6 OS=Homo sapiens GN=P2RY6
           PE=2 SV=1
          Length = 328

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 577 ACLNHLLGYLLALWVFALLIYLVCCLVACFCMLSCLVC 464
           A   H + Y +AL V   L+     L+AC+C+L+C +C
Sbjct: 184 ALATHYMPYGMALTVIGFLLPFAA-LLACYCLLACRLC 220


>sp|P26552|VE5_HPV58 Probable protein E5 OS=Human papillomavirus
           type 58 GN=E5 PE=3 SV=1
          Length = 76

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 533 ICFVDLSCLLSGCLFLHAFLLGVCMYVWVGGLVCFIFV 420
           +CF+   CL   C+FL   +L + +Y W+  LV  ++V
Sbjct: 8   VCFILFLCL---CIFLRPLVLSISIYAWLLVLVLLLWV 42


>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
           herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
          Length = 413

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 574 CLNHLLGYLLALWVFALLIYLVC-CLVACFCMLSCL-VCACM 455
           C+   L     L V A L    C C+ AC C+ +CL VCAC+
Sbjct: 122 CVCACLCVCACLCVCACLCVCACLCVCACLCVCACLCVCACL 163


>sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channel
            subfamily M member 7 OS=Homo sapiens GN=TRPM7 PE=1 SV=1
          Length = 1865

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 421  TKIKH-TNPPTQTYMHTPSKKACKNKQPDNKQDKST 525
            T I H ++PPT+ ++ TPS+ +CK+      +D+ T
Sbjct: 1389 TSIPHLSSPPTKFFVSTPSQPSCKSHLETGTKDQET 1424


>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2
           OS=Mus musculus GN=Srrm2 PE=1 SV=2
          Length = 2703

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 451 QTYMHTPSKKACKNKQPDNKQDKSTKQIPTK 543
           +++ HTPS +A +++ P  K+ +S  + PTK
Sbjct: 469 KSHSHTPSHRAGRSRSPATKRGRSRSRTPTK 499


>sp|Q5HIB2|SDRE_STAAC Serine-aspartate repeat-containing protein E
           OS=Staphylococcus aureus (strain COL) GN=sdrE PE=3 SV=1
          Length = 1166

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 421 TKIKHTNP-PTQTYMHTPSKKACKNKQPDNKQDKSTKQIPTKLKDIPVDDSN 573
           T I+++ P PT + +      A   K+P N   +  K+ P KLK++  +DSN
Sbjct: 190 TNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKKNPEKLKELVRNDSN 241


>sp|P16039|NPM_CHICK Nucleophosmin OS=Gallus gallus GN=NPM1 PE=2
           SV=1
          Length = 294

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 469 PSKKACKNKQPDNKQDKS----TKQIPTKLKDI 555
           PS  A K K PD+K+DKS    T ++P  L++I
Sbjct: 215 PSTPASKTKTPDSKKDKSLTPKTPKVPLSLEEI 247


>sp|Q8A9B8|HTPG_BACTN Chaperone protein htpG OS=Bacteroides
           thetaiotaomicron GN=htpG PE=3 SV=1
          Length = 681

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 445 PTQTYMHTPSKKACKNKQPDNKQDKSTKQIPTKLKD 552
           P QT M++ SK+  +N+  D+++DK  + IPT  KD
Sbjct: 588 PIQTEMNSVSKR--RNELKDSQKDKKEEDIPTAEKD 621


>sp|O01352|DJ_DROME Sperm-specific protein Don juan OS=Drosophila
           melanogaster GN=dj PE=2 SV=2
          Length = 248

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 415 MRTKIKHTNPPTQTYMHTPSKKA--CKNKQPDNKQDKSTKQIPTKLKD 552
           ++ K K     T+     P KK   CK K P  K+D   K+ P K KD
Sbjct: 130 LKKKCKELEKKTKCAKKDPCKKKDPCKKKDPCKKKDPCKKKDPCKKKD 177
tr_hit_id A7JQR0
Definition tr|A7JQR0|A7JQR0_PASHA Putative uncharacterized protein OS=Mannheimia haemolytica PHL213
Align length 43
Score (bit) 34.3
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913159|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B06.
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7JQR0|A7JQR0_PASHA Putative uncharacterized protein OS=Mannh...    34   5.7  
tr|Q4SW41|Q4SW41_TETNG Chromosome 3 SCAF13691, whole genome shot...    28   7.0  
tr|Q4DUM5|Q4DUM5_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.5  
tr|Q4UAL3|Q4UAL3_THEAN Putative uncharacterized protein OS=Theil...    34   7.6  
tr|Q958U0|Q958U0_ECHGR NADH-ubiquinone oxidoreductase chain 6 OS...    33   9.8  

>tr|A7JQR0|A7JQR0_PASHA Putative uncharacterized protein
           OS=Mannheimia haemolytica PHL213 GN=MHA_0419 PE=4 SV=1
          Length = 114

 Score = 34.3 bits (77), Expect = 5.7
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 577 ACLNHLLGYLLALWVFALLIYLVCCLVACF--CMLSCLVCACM 455
           ACLN     LLA  +  LL  L+ CL+AC   C+L+CL+ AC+
Sbjct: 40  ACLNCATLCLLACLLACLLACLLACLLACLLACLLACLL-ACL 81


>tr|Q4SW41|Q4SW41_TETNG Chromosome 3 SCAF13691, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00011666001 PE=4 SV=1
          Length = 559

 Score = 27.7 bits (60), Expect(2) = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 483 CFLAWCVHVCLGGWISMLYFCS 418
           C   WCV VC+  W    +FCS
Sbjct: 390 CVCVWCVCVCVCVWRIRHFFCS 411



 Score = 24.3 bits (51), Expect(2) = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 511 VC-CLVACFCMLSCLVCACM 455
           VC C+  C C+  C+ C C+
Sbjct: 379 VCVCVCVCVCVCVCVWCVCV 398


>tr|Q4DUM5|Q4DUM5_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509399.150 PE=4 SV=1
          Length = 299

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 580 FACLNHLLGYLLALWVFALLIYLVCCLVACFCMLSCL---VCACM 455
           + C+ H+ G +L +W++A +      +  C CM  C+   VC CM
Sbjct: 153 YGCM-HVYGCMLCVWLYACVWLYAVRMAVCMCMAVCMCMAVCMCM 196


>tr|Q4UAL3|Q4UAL3_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA07395 PE=4 SV=1
          Length = 990

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 418 RTKIKHTNPPTQTYMHTPSKKACKNKQPDNKQDKSTKQIPTKLKDIPVDDSNKQIIEQL 594
           RTK  +T P T    ++ S K+ K+K+  NK  K+TK   T    +    S++  I ++
Sbjct: 705 RTKSTNTTPNTNNNTNSSSNKSTKSKKKSNKNQKTTKS-STSSNSVSTSSSSRNNINKI 762


>tr|Q958U0|Q958U0_ECHGR NADH-ubiquinone oxidoreductase chain 6
           OS=Echinococcus granulosus GN=ND6 PE=3 SV=1
          Length = 151

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -3

Query: 580 FACLNHLLGYLLALWVFALLIYLVCCLVACFCMLSCLVCACMFGWVD*YALFLF 419
           F   +H + Y + L V ALL   +C LV  F   S L+C    G V  Y LF+F
Sbjct: 17  FCFTSHCIYYCVMLVVNALLASCICYLVYGFSWYSLLLCLVYVGGV--YVLFIF 68