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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913164
Clone id YMU001_000027_B11
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTTTTTCATCACAAGAGTAGTGACTTAAATTAACCATAGTATT
ATACAGCAAACAACAAGGCGTTCTCAAGGCCTTCTCAGCTAGCCATTCCTTCTACTGTGA
GAGCCAGAACTCGAGGCGTGCTTTTTTGCGAAAAGGTTGGTGCATTTTTAGGAAAAGCGG
ATGTGCCCAAGAGCCAGCTTGACTCAAGCATCTCTAATACATCAGGCAGAAAGTCCTCTC
CCTTTTCGATACCCTGAGAAAGTACCATTCTCTCGCTGGCAGGCACAGCCTTGTCGACAG
CCCCATGGAAAACCTCATCCTCTACAATATTGTCAGCACTCACATTGATCTCCTTGAAAA
GCACTTTATCCACTATTGTAGCTTCCTTAGCATGGAGCTCACCATCCTTCACAACCACAT
CCACACTGGAATCTTTCATAGCATCATTCTTCACAACATCATCCACTCTAACACACGTCT
CCTCAGCACACCCCACGTTCAC
■■Homology search results ■■ -
sp_hit_id Q9USU3
Definition sp|Q9USU3|FBH1_SCHPO F-box DNA helicase protein 1 OS=Schizosaccharomyces pombe
Align length 55
Score (bit) 34.7
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913164|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B11.
         (479 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9USU3|FBH1_SCHPO F-box DNA helicase protein 1 OS=Schizosacch...    35   0.23 
sp|B0JTL3|EFTS_MICAN Elongation factor Ts OS=Microcystis aerugin...    34   0.30 
sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN...    34   0.39 
sp|Q5N1Q1|EFTS_SYNP6 Elongation factor Ts OS=Synechococcus sp. (...    34   0.39 
sp|Q31K58|EFTS_SYNE7 Elongation factor Ts OS=Synechococcus elong...    34   0.39 
sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo sa...    33   0.67 
sp|Q97WJ0|NEP1_SULSO Probable ribosome biogenesis protein NEP1-l...    33   0.87 
sp|Q54VY3|Y6355_DICDI Putative uncharacterized protein DDB_G0280...    30   4.3  
sp|Q80ZA5|S4A10_RAT Sodium-driven chloride bicarbonate exchanger...    30   4.3  
sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    30   5.6  
sp|O29380|GATD_ARCFU Glutamyl-tRNA(Gln) amidotransferase subunit...    30   5.6  
sp|Q0VQF6|EFTS_ALCBS Elongation factor Ts OS=Alcanivorax borkume...    30   5.6  
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransf...    30   7.4  
sp|Q6RVG2|S4A8_RAT Electroneutral sodium bicarbonate exchanger 1...    30   7.4  
sp|Q8JZR6|S4A8_MOUSE Electroneutral sodium bicarbonate exchanger...    30   7.4  
sp|Q2Y0W8|S4A8_HUMAN Electroneutral sodium bicarbonate exchanger...    30   7.4  
sp|Q2RQI5|MOAC_RHORT Molybdenum cofactor biosynthesis protein C ...    30   7.4  
sp|Q5DTL9|S4A10_MOUSE Sodium-driven chloride bicarbonate exchang...    29   9.6  
sp|Q6U841|S4A10_HUMAN Sodium-driven chloride bicarbonate exchang...    29   9.6  
sp|Q32LP4|S4A10_BOVIN Sodium-driven chloride bicarbonate exchang...    29   9.6  
sp|Q07RY4|BCHB_RHOP5 Light-independent protochlorophyllide reduc...    29   9.6  

>sp|Q9USU3|FBH1_SCHPO F-box DNA helicase protein 1
           OS=Schizosaccharomyces pombe GN=fbh1 PE=1 SV=2
          Length = 878

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 37  YTANNKAFSRPSQLAIPSTVRARTRGVLFCEKVGAFLGKADVPKSQLDSSISNTS 201
           Y A NKA    ++L  P  V+  T   L     GA L +AD+P+++L+  +SN++
Sbjct: 319 YVAFNKAAKEDAELRFPFNVKCSTMHGL---AYGAILAQADLPQAKLERQLSNST 370


>sp|B0JTL3|EFTS_MICAN Elongation factor Ts OS=Microcystis aeruginosa
           (strain NIES-843) GN=tsf PE=3 SV=1
          Length = 251

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -1

Query: 377 ELHAKEATIVDKVLFKEINVSADNIVEDEVFHGAVDKAVPASERMVLSQGIEKGE-DFLP 201
           E   KE +++D+   ++ N+S D +++  +     +  V   +R VL +GIEK E DF  
Sbjct: 151 EKRLKELSLLDQPFIRDQNISIDELLKQAIAALGENIQVRRFQRFVLGEGIEKEETDFAA 210

Query: 200 DVLEMLESSWLLGTSAFP---KNAPTFSQKSTP 111
           +V   +        +A P   + AP  + K  P
Sbjct: 211 EVAAQMGQKAPEPVAAAPQVEEKAPEPAAKDNP 243


>sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens
           GN=FOXJ3 PE=1 SV=1
          Length = 622

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +2

Query: 173 SLTQASLIHQAESPLPFRYPEKVPFSRWQAQPCRQPHGKPHPLQYCQ 313
           S+ Q SL H    P P  +P   P    Q  P R PH  PHP Q+ Q
Sbjct: 364 SVAQVSLSHPQMHPQPSPHPPHRPHGLPQ-HPQRSPHPAPHPQQHSQ 409


>sp|Q5N1Q1|EFTS_SYNP6 Elongation factor Ts OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tsf PE=3
           SV=1
          Length = 221

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 377 ELHAKEATIVDKVLFKEINVSADNIVEDEVFHGAVDKAVPASERMVLSQGIEKGE-DFLP 201
           E   KE T++D+   ++ N+S   +V+  +     +  V    R VL +GIEK E DF  
Sbjct: 151 EKRLKELTLLDQPYIRDPNISVAELVKQSIAELGENIQVRRFTRFVLGEGIEKAESDFAA 210

Query: 200 DV 195
           +V
Sbjct: 211 EV 212


>sp|Q31K58|EFTS_SYNE7 Elongation factor Ts OS=Synechococcus
           elongatus (strain PCC 7942) GN=tsf PE=3 SV=1
          Length = 221

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 377 ELHAKEATIVDKVLFKEINVSADNIVEDEVFHGAVDKAVPASERMVLSQGIEKGE-DFLP 201
           E   KE T++D+   ++ N+S   +V+  +     +  V    R VL +GIEK E DF  
Sbjct: 151 EKRLKELTLLDQPYIRDPNISVAELVKQSIAELGENIQVRRFTRFVLGEGIEKAESDFAA 210

Query: 200 DV 195
           +V
Sbjct: 211 EV 212


>sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo
           sapiens GN=KRTAP17-1 PE=2 SV=1
          Length = 105

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 435 CCEE*CYERFQCG-----CGCEGW*APC*GSYNSG*SAFQGDQCEC*QYCRG*GFPWGCR 271
           CCEE C +   CG     CGC G  + C GS   G  +  G  C C   C G G   GC 
Sbjct: 18  CCEECCCQPGCCGCCGSCCGCGG--SGCGGSGCGG--SCCGSSC-CGSGCGGCGGCGGCG 72

Query: 270 QGC 262
            GC
Sbjct: 73  GGC 75


>sp|Q97WJ0|NEP1_SULSO Probable ribosome biogenesis protein NEP1-like
           OS=Sulfolobus solfataricus GN=SSO2226 PE=3 SV=2
          Length = 218

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -1

Query: 293 EVFHGAVDKAVPASERMVLSQGIEKGEDFLPDVLEMLESSWLLGTSAFP 147
           EV +  +D  V   + ++LS   EKGE   P+ +  L+  WLLG  AFP
Sbjct: 130 EVTNLTLDNIVNRYDLILLS---EKGEKINPEEICKLDEKWLLGIGAFP 175


>sp|Q54VY3|Y6355_DICDI Putative uncharacterized protein DDB_G0280065
            OS=Dictyostelium discoideum GN=DDB_G0280065 PE=4 SV=1
          Length = 1402

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 164  PRASLTQASLIHQAESPLPFRYPEKVPFSRWQAQPCRQPHGKPHPLQYCQH 316
            P++ LT    I Q   PL  + P+  P  + Q Q  + P  +P P Q+ QH
Sbjct: 1184 PQSQLTIKQPIQQPLQPL--QQPQPQPQQQQQQQQQQPPQPQPQPQQFAQH 1232


>sp|Q80ZA5|S4A10_RAT Sodium-driven chloride bicarbonate exchanger
           OS=Rattus norvegicus GN=Slc4a10 PE=2 SV=1
          Length = 1117

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 335 FKEINVSADNIVEDEVFHGAVDKAVPASERMVLSQGIEKGEDFLPDVLEMLESSWLLGTS 156
           + EI  S   ++ DEVFH     A  A +R  L  GI   ++FL  V  +    W     
Sbjct: 383 YHEIGRSIATLMTDEVFHDV---AYKAKDRNDLVSGI---DEFLDQVTVLPPGEWDPSIR 436

Query: 155 AF-PKNAPTFSQKSTP 111
              PKN P+  ++ TP
Sbjct: 437 IEPPKNVPSQEKRKTP 452


>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains
           6 OS=Mus musculus GN=Megf6 PE=2 SV=3
          Length = 1572

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 342 SAFQGDQCEC*QYCRG*GFPWGCRQGCACQ 253
           + ++G QCE  Q+CR   F  GC Q C C+
Sbjct: 895 AGYEGPQCE--QWCRQGYFGPGCEQKCRCE 922
tr_hit_id A3CTT6
Definition tr|A3CTT6|A3CTT6_METMJ Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Align length 61
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913164|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B11.
         (479 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3CTT6|A3CTT6_METMJ Glutamyl-tRNA(Gln) amidotransferase subun...    36   1.1  
tr|A2E6S0|A2E6S0_TRIVA Putative uncharacterized protein OS=Trich...    35   1.4  
tr|A7I697|A7I697_METB6 Glutamyl-tRNA(Gln) amidotransferase subun...    34   3.2  
tr|Q5NKK7|Q5NKK7_CRYNE G6383 OS=Cryptococcus neoformans var. neo...    34   4.1  
tr|Q5NKJ5|Q5NKJ5_CRYNE G6383 OS=Cryptococcus neoformans var. neo...    34   4.1  
tr|Q5KHM1|Q5KHM1_CRYNE Fungal Zn(2)-Cys(6) binuclear cluster dom...    34   4.1  
tr|Q2FR17|Q2FR17_METHJ Glutamyl-tRNA(Gln) amidotransferase subun...    33   5.4  
tr|Q6NXL5|Q6NXL5_MOUSE Centaurin, beta 5 OS=Mus musculus GN=Acap...    33   7.0  
tr|Q4QQN0|Q4QQN0_MOUSE Centb5 protein OS=Mus musculus GN=Acap3 P...    33   7.0  
tr|Q3UH98|Q3UH98_MOUSE Putative uncharacterized protein OS=Mus m...    33   7.0  
tr|A2ADA6|A2ADA6_MOUSE Centaurin, beta 5 OS=Mus musculus GN=Acap...    33   7.0  
tr|A5VEE0|A5VEE0_SPHWW Transcriptional regulator, MarR family OS...    33   7.0  
tr|A8YBB3|A8YBB3_MICAE Elongation factor Ts OS=Microcystis aerug...    33   7.0  
tr|A8J213|A8J213_CHLRE Qb-SNARE protein, Gos1/GS28-family OS=Chl...    33   9.2  
tr|Q0VCC6|Q0VCC6_BOVIN TTLL3 protein OS=Bos taurus GN=TTLL3 PE=2...    33   9.2  

>tr|A3CTT6|A3CTT6_METMJ Glutamyl-tRNA(Gln) amidotransferase subunit
           D OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM
           1498 / JR1) GN=Memar_0853 PE=3 SV=1
          Length = 409

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -1

Query: 305 IVEDEVFHGAVDKAVPASERMVLSQGIEKGEDFLPDVLEMLESSWLLGTSAFPKNAPTFS 126
           ++  +  HG V   V  + R +LS G+ +GED LP+   +++  W+LG    P+ A    
Sbjct: 338 VMTSQCLHGRVCDRVYNTGRDLLSAGVIEGEDMLPEA-ALVKLMWVLGNEPDPERAGVLM 396

Query: 125 Q 123
           Q
Sbjct: 397 Q 397


>tr|A2E6S0|A2E6S0_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_158910 PE=4 SV=1
          Length = 143

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/78 (30%), Positives = 28/78 (35%)
 Frame = -3

Query: 459 GDVC*SG*CCEE*CYERFQCGCGCEGW*APC*GSYNSG*SAFQGDQCEC*QYCRG*GFPW 280
           GD+C     C   C +   CG  C      C  SYNS      GD C C   C       
Sbjct: 76  GDICNCSSSCN--CGDNCNCGSSCN-----CGNSYNSQNGCNCGDNCNCGNTC------- 121

Query: 279 GCRQGCACQRENGTFSGY 226
            C   C C  E   F+G+
Sbjct: 122 NCGSSCNC-GEGSYFTGF 138


>tr|A7I697|A7I697_METB6 Glutamyl-tRNA(Gln) amidotransferase subunit
           D OS=Methanoregula boonei (strain 6A8) GN=Mboo_0740 PE=3
           SV=1
          Length = 382

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 305 IVEDEVFHGAVDKAVPASERMVLSQGIEKGEDFLPDVLEMLESSWLLGTSAFPKNAPT 132
           ++  +  HG V   V  + R +L+ G+ +G D LP+V  +++  W+LG    P  A T
Sbjct: 308 VMTSQCMHGRVCDRVYDTGRDLLAAGVIEGGDMLPEV-ALVKQMWVLGNEKDPAKAAT 364


>tr|Q5NKK7|Q5NKK7_CRYNE G6383 OS=Cryptococcus neoformans var.
           neoformans PE=4 SV=1
          Length = 830

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 218 PFRYPEKVP---FSRWQAQPCRQPHGKPHPLQYCQHSH*SP*KAXXXXXXXXXXXXXXXS 388
           P   PE +P    SR QAQ   +PH  PH   +  HSH  P                  S
Sbjct: 678 PNSLPEAMPSYSHSRSQAQSQSRPHSHPHTTSHSHHSHHYP---------------TPFS 722

Query: 389 QPHPH 403
            PHPH
Sbjct: 723 HPHPH 727


>tr|Q5NKJ5|Q5NKJ5_CRYNE G6383 OS=Cryptococcus neoformans var.
           neoformans PE=4 SV=1
          Length = 830

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 218 PFRYPEKVP---FSRWQAQPCRQPHGKPHPLQYCQHSH*SP*KAXXXXXXXXXXXXXXXS 388
           P   PE +P    SR QAQ   +PH  PH   +  HSH  P                  S
Sbjct: 678 PNSLPEAMPSYSHSRSQAQSQSRPHSHPHTTSHSHHSHHYP---------------TPFS 722

Query: 389 QPHPH 403
            PHPH
Sbjct: 723 HPHPH 727


>tr|Q5KHM1|Q5KHM1_CRYNE Fungal Zn(2)-Cys(6) binuclear cluster
           domain-containing protein, putative OS=Cryptococcus
           neoformans GN=CNBD0410 PE=4 SV=1
          Length = 852

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 218 PFRYPEKVP---FSRWQAQPCRQPHGKPHPLQYCQHSH*SP*KAXXXXXXXXXXXXXXXS 388
           P   PE +P    SR QAQ   +PH  PH   +  HSH  P                  S
Sbjct: 700 PNSLPEAMPSYSHSRSQAQSQSRPHSHPHTTSHSHHSHHYP---------------TPFS 744

Query: 389 QPHPH 403
            PHPH
Sbjct: 745 HPHPH 749


>tr|Q2FR17|Q2FR17_METHJ Glutamyl-tRNA(Gln) amidotransferase subunit
           D OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
           GN=Mhun_0083 PE=3 SV=1
          Length = 410

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -1

Query: 305 IVEDEVFHGAVDKAVPASERMVLSQGIEKGEDFLPDVLEMLESSWLLGTSA 153
           ++  +  HG +   V  + R +L  G+ +GED LP+V  +++  W+LG S+
Sbjct: 338 VMTSQCLHGRICDRVYDTGRDLLGAGVIEGEDMLPEV-ALVKLMWVLGNSS 387


>tr|Q6NXL5|Q6NXL5_MOUSE Centaurin, beta 5 OS=Mus musculus GN=Acap3
           PE=2 SV=1
          Length = 833

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 230 PEKVPFSRWQAQPCRQPHGKPH 295
           P + P  RW+AQ C++PH  PH
Sbjct: 525 PAREPPRRWRAQKCQRPHSSPH 546


>tr|Q4QQN0|Q4QQN0_MOUSE Centb5 protein OS=Mus musculus GN=Acap3 PE=2
           SV=1
          Length = 626

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 230 PEKVPFSRWQAQPCRQPHGKPH 295
           P + P  RW+AQ C++PH  PH
Sbjct: 525 PAREPPRRWRAQKCQRPHSSPH 546


>tr|Q3UH98|Q3UH98_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Acap3 PE=2 SV=1
          Length = 833

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 230 PEKVPFSRWQAQPCRQPHGKPH 295
           P + P  RW+AQ C++PH  PH
Sbjct: 525 PAREPPRRWRAQKCQRPHSSPH 546