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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913169
Clone id YMU001_000027_C06
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTAACAGAAAAGCTTGTCATGATATACTTTCCAAAGAAGATGC
CCCAGGCTCTGTACAAAACATATCACTCTCTCTGCCAAAGAACCAAAAACCTGAATGGGT
CGCAACATAAGAGCCTACAAAAAAGGAGTACCAGGGAAAGAAGCCTACGACTTCTTGGAC
AACTTCATGGGGCTACAAGCAGGTATCCGTAACAAAGCAAGGATAGCACAAGACAGCATT
TTCCACTGAGTGAGACTTATTTGCATATGAGACTTAAGTCATGCCATTTCAAACCGAGAA
ATTGTCTTCACACTTTGATTGTTGACAAATAGATAGCCTCCTTTCCTCCCTCAAAACACA
CAAGCCTCTAGGCCTGGTTCAAGAATCAAGTTCAGCTCAGCCATAGTTAGCTCCTTGCTT
GCAGGACATGCAGCAATGAATCAAGGAAAGGGTAAGAGGCATCAAAATGCCCAAGAGAAA
TGAAGGGCATAGCCAAGCCAGAAGCATGCCTGCCGGCATTCCTCATACCCAGTTTTACTA
TAGATACTTC
■■Homology search results ■■ -
sp_hit_id Q8NDH2
Definition sp|Q8NDH2|YM018_HUMAN Putative uncharacterized protein FLJ40176 OS=Homo sapiens
Align length 38
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913169|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_C06.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NDH2|YM018_HUMAN Putative uncharacterized protein FLJ40176 ...    33   1.1  
sp|Q5ZLM2|DBR1_CHICK Lariat debranching enzyme OS=Gallus gallus ...    31   4.3  
sp|Q57858|Y415_METJA Uncharacterized protein MJ0415 OS=Methanoca...    30   5.5  
sp|Q85X62|RPOC2_PINKO DNA-directed RNA polymerase subunit beta''...    30   7.2  
sp|Q3AS55|DDL_CHLCH D-alanine--D-alanine ligase OS=Chlorobium ch...    30   7.2  
sp|Q9BYJ1|LOXE3_HUMAN Epidermis-type lipoxygenase 3 OS=Homo sapi...    30   9.4  
sp|A1KGK6|Y775_MYCBP Putative S-adenosyl-L-methionine-dependent ...    30   9.5  
sp|Q7U1E7|Y746_MYCBO Putative S-adenosyl-L-methionine-dependent ...    30   9.5  
sp|A5U0B1|Y733_MYCTA Putative S-adenosyl-L-methionine-dependent ...    30   9.5  

>sp|Q8NDH2|YM018_HUMAN Putative uncharacterized protein FLJ40176
            OS=Homo sapiens PE=2 SV=2
          Length = 2452

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 360  SRIKFSSA-IVSSLLAGHAAMNQGKGKRHQNAQEK*RA 470
            SR  +SSA +  S +  H A NQGK  RH  +QE+ +A
Sbjct: 2280 SRTSYSSAPLTESNIKSHLAKNQGKSHRHPESQERKKA 2317


>sp|Q5ZLM2|DBR1_CHICK Lariat debranching enzyme OS=Gallus gallus
           GN=DBR1 PE=2 SV=1
          Length = 536

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 334 KTHKPLGLVQESSSAQP*LAPCLQDMQQ*IKERVRGIKMPKRNEGHSQARSMPAGIPHTQ 513
           K ++ L L+Q   + +P L  C  D Q              RNE   +  ++PA   H Q
Sbjct: 15  KMYETLELLQRRHNVRPDLLLCCGDFQA------------VRNEADLRCMAVPAKYRHMQ 62

Query: 514 FYYRYF 531
            +YRY+
Sbjct: 63  TFYRYY 68


>sp|Q57858|Y415_METJA Uncharacterized protein MJ0415
           OS=Methanocaldococcus jannaschii GN=MJ0415 PE=4 SV=1
          Length = 162

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  MIYFPKKMPQALYKTYHSLCQRTKNLNG 100
           M+ FPKK P  LYK Y  +    + +NG
Sbjct: 24  MVVFPKKYPDVLYKEYDVIKIENRTING 51


>sp|Q85X62|RPOC2_PINKO DNA-directed RNA polymerase subunit beta''
            OS=Pinus koraiensis GN=rpoC2 PE=3 SV=1
          Length = 1209

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
 Frame = +2

Query: 74   CQRTKNLNGSQHKSLQKRSTRERSLR-------LLGQLHGATSRYP-----*QSKDSTRQ 217
            C R    N S+      +S R+  +R       LLG LH  TSR+P        K  +++
Sbjct: 786  CFRIVLFNDSKCYDTGNKSNRKDPMRKIIEFSGLLGHLHSITSRFPSSQFITDKKVLSKK 845

Query: 218  HFPLSETYLHMRLKSCHFKP-RNCLHTLI 301
            H      ++   ++  HF P RN +  L+
Sbjct: 846  HSIFHNYFMDENMRISHFDPCRNIISNLL 874


>sp|Q3AS55|DDL_CHLCH D-alanine--D-alanine ligase OS=Chlorobium
           chlorochromatii (strain CaD3) GN=ddl PE=3 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 132 PGKEAYDFLDNFMGLQAGIRNKARIAQ 212
           PGKE YDF D +MG  A +   ARI +
Sbjct: 253 PGKEFYDFQDKYMGNSAKLFIPARIPE 279


>sp|Q9BYJ1|LOXE3_HUMAN Epidermis-type lipoxygenase 3 OS=Homo sapiens
           GN=ALOXE3 PE=1 SV=1
          Length = 711

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 354 PGSRIKFSSAIVSSLLAGHAAMNQGK---GKRHQNAQEK*RA*PSQ 482
           PG  +KF +AI+ +  A HAA+N G+   G    NA    R  P Q
Sbjct: 570 PGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMRQPPPQ 615


>sp|A1KGK6|Y775_MYCBP Putative S-adenosyl-L-methionine-dependent
           methyltransferase BCG_0775c OS=Mycobacterium bovis
           (strain BCG / Pasteur 1173P2) GN=BCG_0775c PE=3 SV=1
          Length = 301

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 40  APGSVQNISLSLPKNQKPEWVAT*EPTKKEYQGKKPTTSWTTSW 171
           AP SV   + SLP   +  W++T +   ++++ +  +T+WT++W
Sbjct: 202 APNSVLRAARSLPNLSRALWIST-QAGYEKWRIRFASTAWTSTW 244


>sp|Q7U1E7|Y746_MYCBO Putative S-adenosyl-L-methionine-dependent
           methyltransferase Mb0746c OS=Mycobacterium bovis
           GN=Mb0746c PE=3 SV=1
          Length = 301

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 40  APGSVQNISLSLPKNQKPEWVAT*EPTKKEYQGKKPTTSWTTSW 171
           AP SV   + SLP   +  W++T +   ++++ +  +T+WT++W
Sbjct: 202 APNSVLRAARSLPNLSRALWIST-QAGYEKWRIRFASTAWTSTW 244


>sp|A5U0B1|Y733_MYCTA Putative S-adenosyl-L-methionine-dependent
           methyltransferase MRA_0733 OS=Mycobacterium tuberculosis
           (strain ATCC 25177 / H37Ra) GN=MRA_0733 PE=3 SV=1
          Length = 301

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 40  APGSVQNISLSLPKNQKPEWVAT*EPTKKEYQGKKPTTSWTTSW 171
           AP SV   + SLP   +  W++T +   ++++ +  +T+WT++W
Sbjct: 202 APNSVLRAARSLPNLSRALWIST-QAGYEKWRIRFASTAWTSTW 244
tr_hit_id Q8W2R5
Definition tr|Q8W2R5|Q8W2R5_ORYSA Putative polyprotein OS=Oryza sativa
Align length 70
Score (bit) 33.1
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913169|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_C06.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8W2R5|Q8W2R5_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    33   9.2  
tr|Q7XGR4|Q7XGR4_ORYSJ Os10g0151700 protein OS=Oryza sativa subs...    33   9.2  

>tr|Q8W2R5|Q8W2R5_ORYSA Putative polyprotein OS=Oryza sativa
           GN=OSJNBa0028C16.7 PE=4 SV=1
          Length = 848

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 26/70 (37%), Positives = 31/70 (44%)
 Frame = +1

Query: 127 EYQGKKPTTSWTTSWGYKQVSVTKQG*HKTAFSTE*DLFAYET*VMPFQTEKLSSHFDC* 306
           E +G K  T      GY QV +  +  HKTAF T   LF  E  VMPF     S+ F   
Sbjct: 590 ELRGAKFFTKLDMRSGYHQVRMHPEDVHKTAFRTHQGLF--EFLVMPFGLTNASATFQAF 647

Query: 307 QIDSLLSSLK 336
             D L   L+
Sbjct: 648 MNDVLFPFLR 657


>tr|Q7XGR4|Q7XGR4_ORYSJ Os10g0151700 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0151700 PE=4 SV=1
          Length = 848

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 26/70 (37%), Positives = 31/70 (44%)
 Frame = +1

Query: 127 EYQGKKPTTSWTTSWGYKQVSVTKQG*HKTAFSTE*DLFAYET*VMPFQTEKLSSHFDC* 306
           E +G K  T      GY QV +  +  HKTAF T   LF  E  VMPF     S+ F   
Sbjct: 590 ELRGAKFFTKLDMRSGYHQVRMHPEDVHKTAFRTHQGLF--EFLVMPFGLTNASATFQAF 647

Query: 307 QIDSLLSSLK 336
             D L   L+
Sbjct: 648 MNDVLFPFLR 657