NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913174
Clone id YMU001_000027_D01
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTAAAAGCTTAGAGCCAATTAAAATGATCCAAGCACTAAAAAAAGTTGCTGACAGCCATA
ATATTTGACCTATCCCGCACCAAAAAAAAAAGAGTCCTTTCTACTTGCCCTACCTCATCT
TTATCATGAAATAGGCAGATAGAGACCTATCCTTTGCAGCATCGAAGTGACTCAAGACAT
GGCAAAAATTGCAGAAAATGGATGGGAAGATGGCAAAGAATATGCATACGAGAATGTATT
CACGTACACATTTATGCTCGGCTATGTCAAGACTGGAGTGTATATATATTAAGGACGACA
CCTTTGCTATGACCATGATCCACATTTGCATCTGTATGCCCTTCAAAAAGAGGGTACAAA
AAAGTGCATGGCACTTGAGAAGTTTATACATGGTTAGTCACATGGTTAGTCTTCTGTAGG
CTGCAAAGTTGGCACAGAAAGTGGCAATCATCCAAAGGACCGCCATATTCGTCCTTCCAA
AGATATGATCATTACT
■■Homology search results ■■ -
sp_hit_id Q96S52
Definition sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sapiens
Align length 84
Score (bit) 30.4
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913174|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D01.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sa...    30   4.6  
sp|Q8RWN7|POL_ARATH Protein phosphatase 2C POL OS=Arabidopsis th...    30   4.7  
sp|P00468|NIFK_ANASP Nitrogenase molybdenum-iron protein beta ch...    30   6.0  
sp|Q1RI93|COXX_RICBR Protoheme IX farnesyltransferase OS=Rickett...    30   6.1  
sp|A8GVN8|COXX_RICB8 Protoheme IX farnesyltransferase OS=Rickett...    30   6.1  
sp|Q9ES66|CAN10_RAT Calpain-10 OS=Rattus norvegicus GN=Capn10 PE...    30   7.9  
sp|Q9ESK3|CAN10_MOUSE Calpain-10 OS=Mus musculus GN=Capn10 PE=2 ...    30   7.9  
sp|Q9HC96|CAN10_HUMAN Calpain-10 OS=Homo sapiens GN=CAPN10 PE=2 ...    30   7.9  
sp|Q6ZGY0|P2C26_ORYSJ Probable protein phosphatase 2C 26 OS=Oryz...    30   8.0  

>sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo
           sapiens GN=PIGS PE=1 SV=3
          Length = 555

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/84 (23%), Positives = 40/84 (47%)
 Frame = +3

Query: 147 LSFAASK*LKTWQKLQKMDGKMAKNMHTRMYSRTHLCSAMSRLECIYIKDDTFAMTMIHI 326
           LS   S+ L TW+  + +  +  +N+ T   + T L   + ++  I IKDD    + ++ 
Sbjct: 410 LSGPTSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDD--VASEVYK 467

Query: 327 CICMPFKKRVQKSAWHLRSLYMVS 398
            +    K   + ++ HL S ++ S
Sbjct: 468 AVAAVQKSAEELASGHLASAFVAS 491


>sp|Q8RWN7|POL_ARATH Protein phosphatase 2C POL OS=Arabidopsis
           thaliana GN=POL PE=1 SV=1
          Length = 856

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 495 VMIISLEGRIWRSFG 451
           VM++SLEGRIWRS G
Sbjct: 830 VMVVSLEGRIWRSSG 844


>sp|P00468|NIFK_ANASP Nitrogenase molybdenum-iron protein beta chain
           OS=Anabaena sp. (strain PCC 7120) GN=nifK PE=3 SV=2
          Length = 512

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 294 DDTFAMTMIHICICMPFKKR----VQKSAWHLRSL 386
           DDTF   M  I    PF K     +QK  WH RSL
Sbjct: 395 DDTFKKEMEAILAASPFGKEAKVWIQKDLWHFRSL 429


>sp|Q1RI93|COXX_RICBR Protoheme IX farnesyltransferase OS=Rickettsia
           bellii (strain RML369-C) GN=ctaB PE=3 SV=1
          Length = 300

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 316 MVIAKVSSLIYIHSSL----DIAEHKCVREYILVCIFFAIFPSIFCNFCHV 176
           +VIA V  L++++ S+    D A++K  + +    IF+  F  +  +FC V
Sbjct: 250 LVIAAVLGLVFLYYSISLFYDNADNKQAKRFFAYSIFYLFFIFLLLDFCRV 300


>sp|A8GVN8|COXX_RICB8 Protoheme IX farnesyltransferase OS=Rickettsia
           bellii (strain OSU 85-389) GN=ctaB PE=3 SV=1
          Length = 300

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 316 MVIAKVSSLIYIHSSL----DIAEHKCVREYILVCIFFAIFPSIFCNFCHV 176
           +VIA V  L++++ S+    D A++K  + +    IF+  F  +  +FC V
Sbjct: 250 LVIAAVLGLVFLYYSISLFYDNADNKQAKRFFAYSIFYLFFIFLLLDFCRV 300


>sp|Q9ES66|CAN10_RAT Calpain-10 OS=Rattus norvegicus GN=Capn10 PE=2
           SV=1
          Length = 666

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 461 GPLDDCHFLCQLCSLQKTNHVTNHV 387
           G L DC FLC   +LQK+ H+ + V
Sbjct: 68  GLLGDCWFLCACAALQKSRHLLDQV 92


>sp|Q9ESK3|CAN10_MOUSE Calpain-10 OS=Mus musculus GN=Capn10 PE=2
           SV=2
          Length = 666

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 461 GPLDDCHFLCQLCSLQKTNHVTNHV 387
           G L DC FLC   +LQK+ H+ + V
Sbjct: 68  GLLGDCWFLCACAALQKSQHLLDQV 92


>sp|Q9HC96|CAN10_HUMAN Calpain-10 OS=Homo sapiens GN=CAPN10 PE=2
           SV=1
          Length = 672

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 461 GPLDDCHFLCQLCSLQKTNHVTNHV 387
           G L DC FLC   +LQK+ H+ + V
Sbjct: 68  GLLGDCWFLCACAALQKSRHLLDQV 92


>sp|Q6ZGY0|P2C26_ORYSJ Probable protein phosphatase 2C 26 OS=Oryza
           sativa subsp. japonica GN=Os02g0690500 PE=2 SV=1
          Length = 596

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 495 VMIISLEGRIWRSFG 451
           VM+ISLEGRIW+S G
Sbjct: 579 VMVISLEGRIWKSSG 593
tr_hit_id A8MVD4
Definition tr|A8MVD4|A8MVD4_HUMAN Putative uncharacterized protein ENSP00000382760 (Fragment) OS=Homo sapiens
Align length 43
Score (bit) 33.5
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913174|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D01.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8MVD4|A8MVD4_HUMAN Putative uncharacterized protein ENSP0000...    33   5.7  
tr|Q9SHM4|Q9SHM4_ARATH F7F22.16 OS=Arabidopsis thaliana PE=4 SV=1      33   7.5  

>tr|A8MVD4|A8MVD4_HUMAN Putative uncharacterized protein
           ENSP00000382760 (Fragment) OS=Homo sapiens PE=4 SV=1
          Length = 127

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 221 YAYENVFTYTF--MLGYVKTG--VYIY*GRHLCYDHDPHLHLY 337
           Y Y +++T+T+  M  YV T   VYIY   HL  +H  H H++
Sbjct: 12  YIYMHIYTHTYIHMYAYVHTYIYVYIYTWTHLAAEHHSHTHMH 54


>tr|Q9SHM4|Q9SHM4_ARATH F7F22.16 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 804

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 286 YIHSSLDIAE--HKCVREYILVCIFFAIFPSIFC 191
           Y+HSS +++   H C   Y+++CIFF  F    C
Sbjct: 592 YVHSSTEVSASLHHCTIPYVVICIFFFCFCDWIC 625