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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913177
Clone id YMU001_000027_D05
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCACTGAATGAAGCATCAGAAGTGGATTGAAGACAATAACCTGGAAGCCCCCTCTGAAA
GAGAAGTATCCTCAAAAACACGCTCTGGGGTAACAACTGACTCAACCCACGTTGGAACAG
AGCAAACACTGTCACTGAAAGCTCTAGAGTAAAAGCTGAGAGCTTCCTCCAAGATAAGAA
GTCCCTCCTCTCGCTCACTACTCTGTAAAGAGAATGAGTACCACTAGAAAGAAATGTGAG
ACAACCTAGAGAAACTACTTCCTCTATAACTGAATAGCAAGACCTGAATCTCATGGAACT
CGAAACACCAAGAGAATCACACCATCAGTAAACTCGGACTTCTAAGAATAGGAAGACCTG
AGAGGTCATCACCTAAGGATCATGTTTGCCAAAGAAGTCGTCGGGGTCCAACAAGAACCT
AGCTACTCAAGCAAACTCCCTGAGATCAAACCAAATGTCCGTCACTCCTCTGTATCTGCC
AAGATCAACCTGTACGTACAATCCAATACAATATGTCAA
■■Homology search results ■■ -
sp_hit_id Q8IZM9
Definition sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens
Align length 47
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913177|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D05.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid...    33   1.1  
sp|Q6WWW3|S38A6_RAT Probable sodium-coupled neutral amino acid t...    32   1.4  
sp|Q60308|Y3409_METJA Uncharacterized protein MJECS09 OS=Methano...    30   5.3  
sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3 ...    30   6.9  
sp|Q01098|NMDE3_MOUSE Glutamate [NMDA] receptor subunit epsilon-...    30   6.9  

>sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid
           transporter 6 OS=Homo sapiens GN=SLC38A6 PE=2 SV=1
          Length = 456

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -1

Query: 285 RSCYSVIEEVVSLGCLTFLSSGTHSLYRVVSERRDFLSWRKLSAFTL 145
           R+ + V+    S  CL F+  G   L+ +   R DFLSW+KL AF L
Sbjct: 392 RNVFGVVGASTST-CLIFIFPG---LFYLKLSREDFLSWKKLGAFVL 434


>sp|Q6WWW3|S38A6_RAT Probable sodium-coupled neutral amino acid
           transporter 6 OS=Rattus norvegicus GN=Slc38a6 PE=2 SV=1
          Length = 457

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 285 RSCYSVIEEVVSLGCLTFLSSGTHSLYRVVSERRDFLSWRKLSAFTLELSVTVFALF 115
           R+ + V+    S  CL F+  G   L+ +   R DFLSW+KL A +L  + TV   F
Sbjct: 393 RNVFGVVGASTST-CLIFVFPG---LFYLKLSREDFLSWKKLGALSLLSTGTVVGSF 445


>sp|Q60308|Y3409_METJA Uncharacterized protein MJECS09
           OS=Methanocaldococcus jannaschii GN=MJECS09 PE=4 SV=1
          Length = 237

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -1

Query: 315 SLGVSSSMRFRSCYSVIEEVVSLGCLTFLSSGTHSLYRVVSERRDFLSWRKLSAFTLELS 136
           +L +   M F SC S+++         +  + TH LY++    +  L + +++      S
Sbjct: 109 NLPLEDEMLFLSCGSLVK---------YQDASTHKLYKLEYLTKLILGYNRINVDNCICS 159

Query: 135 VTVFAL--FQRGLSQLLPQSVFLRILLFQR 52
           + VFA+  F+R L      + F  I+L +R
Sbjct: 160 IKVFAISTFERFLYHEFENNAFKLIMLHKR 189


>sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3
           OS=Rattus norvegicus GN=Grin2c PE=1 SV=1
          Length = 1237

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = -1

Query: 312 LGVSSSMRFRSCYSVIEEV--VSLGCLTFLSSGTHSLY----RVVSERRDFLSWRKLSAF 151
           LGVS   + +  + V+EE    +   +T L  G H+L+    R V++   +LSWR L   
Sbjct: 142 LGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPG-HALFLEGVRAVADA-SYLSWRLLDVL 199

Query: 150 TLEL 139
           TLEL
Sbjct: 200 TLEL 203


>sp|Q01098|NMDE3_MOUSE Glutamate [NMDA] receptor subunit epsilon-3
           OS=Mus musculus GN=Grin2c PE=2 SV=2
          Length = 1239

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = -1

Query: 312 LGVSSSMRFRSCYSVIEEV--VSLGCLTFLSSGTHSLY----RVVSERRDFLSWRKLSAF 151
           LGVS   + +  + V+EE    +   +T L  G H+L+    R V++   +LSWR L   
Sbjct: 142 LGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPG-HALFLEGVRAVADA-SYLSWRLLDVL 199

Query: 150 TLEL 139
           TLEL
Sbjct: 200 TLEL 203
tr_hit_id Q9FXJ5
Definition tr|Q9FXJ5|Q9FXJ5_ARATH F5A9.24 OS=Arabidopsis thaliana
Align length 106
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913177|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D05.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FXJ5|Q9FXJ5_ARATH F5A9.24 OS=Arabidopsis thaliana PE=4 SV=1       35   2.9  
tr|B6KHR8|B6KHR8_TOXGO Eukaryotic translation initiation factor ...    33   8.5  
tr|B8PN04|B8PN04_9APHY Smf Mn2+ and Fe2+ transporter-like protei...    33   8.5  
tr|B8P1K2|B8P1K2_9APHY Hypothetical smf Mn2+ and Fe2+ transporte...    33   8.5  
tr|Q3JWI9|Q3JWI9_BURP1 PilL OS=Burkholderia pseudomallei (strain...    33   8.5  

>tr|Q9FXJ5|Q9FXJ5_ARATH F5A9.24 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1254

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
 Frame = -3

Query: 352  PILRSPSLLMV*FSWCFEF---HEIQVLLFSYRGSSFSRLSHISF*WYSFSLQSSERE-- 188
            PI      L+    W  E    H+I  ++F+++  S          W SF  QS E E  
Sbjct: 1126 PISSKADALLRCLLWAMESMASHKIDNIIFAFQDKSLIGAVLRPRAWPSFKAQSVELEFS 1185

Query: 187  ---EGLLILEEALSFYSRAFSDSVCSVPTWVESVVTPERVFEDTSL 59
                G  ++ ++++  SR+ S      P W+  V   ERVFE   L
Sbjct: 1186 AANRGANLIAQSVTEASRSQSYVAVGHPYWMNGVFVEERVFEINGL 1231


>tr|B6KHR8|B6KHR8_TOXGO Eukaryotic translation initiation factor 3
           subunit 3, putative OS=Toxoplasma gondii ME49
           GN=TGME49_051500 PE=4 SV=1
          Length = 600

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
 Frame = -1

Query: 282 SCYSVIEEVVSLGCLTFLSSGTHSLYRVVSERRDFLSWRKLS-AFTLELSVT-------- 130
           +CYS    V S GC +F  S   SL+R V  R   +S   LS AF L  SV+        
Sbjct: 58  ACYSSSSCVCSAGCFSFSFSRRFSLFRSVLSRASGVSPVLLSPAFPLPSSVSSSRARFLC 117

Query: 129 --VFALFQRGLSQL--LPQSVFLRILLF---QRGLPGYCL 31
             +  L   GL  L  LP S    +LLF   Q  LP + L
Sbjct: 118 TLLLVLSPHGLHSLSPLPFSGLTAVLLFSKPQAKLPAFFL 157


>tr|B8PN04|B8PN04_9APHY Smf Mn2+ and Fe2+ transporter-like protein
           OS=Postia placenta Mad-698-R GN=POSPLDRAFT_52765 PE=4
           SV=1
          Length = 517

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = -1

Query: 276 YSVIEEVVS--LGCLTFLSSGTHSLYRVVSERRDFLSWRKLSAFTLELSVTVFALFQRGL 103
           ++V  +V+S  LGC+T L   TH    +    +  L WR L  + L +   V A+    L
Sbjct: 67  FAVYMQVLSSRLGCVTGLDLATHCRLLLHDRPKHTLRWRWLVLYPLYVLAEV-AIIATDL 125

Query: 102 SQLLPQSVFLRILLFQRGLPGYCLQSTSDASF 7
           ++LL  ++ L +L  +  L    L + SD  F
Sbjct: 126 AELLGSAIALNLLFPRLPLWAGVLVTASDVLF 157


>tr|B8P1K2|B8P1K2_9APHY Hypothetical smf Mn2+ and Fe2+ transporter
           OS=Postia placenta Mad-698-R GN=POSPLDRAFT_134642 PE=4
           SV=1
          Length = 518

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = -1

Query: 276 YSVIEEVVS--LGCLTFLSSGTHSLYRVVSERRDFLSWRKLSAFTLELSVTVFALFQRGL 103
           ++V  +V+S  LGC+T L   TH    +    +  L WR L  + L +   V A+    L
Sbjct: 67  FAVYMQVLSSRLGCVTGLDLATHCRLLLHDRPKHTLRWRWLVLYPLYVLAEV-AIIATDL 125

Query: 102 SQLLPQSVFLRILLFQRGLPGYCLQSTSDASF 7
           ++LL  ++ L +L  +  L    L + SD  F
Sbjct: 126 AELLGSAIALNLLFPKLPLWAGVLVTASDVLF 157


>tr|Q3JWI9|Q3JWI9_BURP1 PilL OS=Burkholderia pseudomallei (strain
           1710b) GN=pilL PE=4 SV=1
          Length = 833

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -3

Query: 217 SFSLQSSEREEGLLILEEALSFYSRAFSDSVCSVPTWVESVVTPERVFEDTSLSEGASRL 38
           ++S +SS+    + IL    + YS     SVC  P W  + +T   V  +T  +E ASR+
Sbjct: 547 AWSTRSSDTAASIFILGRKSTTYSAPRYSSVC--PFWRPNPLTSVTVMPETPSAESASRV 604

Query: 37  LSSIH 23
            SS++
Sbjct: 605 SSSLN 609