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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913178
Clone id YMU001_000027_D06
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATTCTTCCAGTTCGCAGAGCTAGTAGCAATTTGAATTAAAAAATGC
TAAGGAGGTACAAATTTTTTGGTACAAGTTCACAAGCAAGTCTGTGAACTTCTGTGTGCA
ACAATAATTGAATGTTGTGCACGGAGAGTACACGCACAATTCCAAAAATAACCACTTCGC
TGCTGCCCAACTTCCAAAAATGATAAGACAGAATACAAGACATGAGCACAGTAAATGCAG
CAGCAGAAGGCTACTCTCCTGTTCGACGATTGCATGTCCAAATGTCGAATTGTACGAAGA
TTAATCAGCACTGTACAAAACGCCCACCATTGTCTTCCCAATTGAGTTTAGAATCTGATA
ATCTTTTGTGATGCTTCGTATCAACCAATAAGCTGATGCATGAAGCTGAAAGCCTT
■■Homology search results ■■ -
sp_hit_id Q4V8I3
Definition sp|Q4V8I3|TENS4_RAT Tensin-4 OS=Rattus norvegicus
Align length 52
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913178|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D06.
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4V8I3|TENS4_RAT Tensin-4 OS=Rattus norvegicus GN=Tns4 PE=2 SV=1    34   0.26 
sp|Q8BZ33|TENS4_MOUSE Tensin-4 OS=Mus musculus GN=Tns4 PE=2 SV=1       32   0.76 
sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseu...    31   1.7  
sp|Q8IZW8|TENS4_HUMAN Tensin-4 OS=Homo sapiens GN=TNS4 PE=1 SV=2       31   2.2  
sp|A1SWR2|LPXH_PSYIN UDP-2,3-diacylglucosamine hydrolase OS=Psyc...    31   2.2  
sp|Q32PJ7|TENS4_BOVIN Tensin-4 OS=Bos taurus GN=TNS4 PE=2 SV=2         30   2.9  
sp|P79240|C5AR_PANTR C5a anaphylatoxin chemotactic receptor (Fra...    30   4.9  
sp|P21730|C5AR_HUMAN C5a anaphylatoxin chemotactic receptor OS=H...    30   4.9  
sp|P04626|ERBB2_HUMAN Receptor tyrosine-protein kinase erbB-2 OS...    29   6.4  
sp|P79234|C5AR_PONPY C5a anaphylatoxin chemotactic receptor (Fra...    29   6.4  
sp|P79188|C5AR_MACMU C5a anaphylatoxin chemotactic receptor (Fra...    29   6.4  
sp|P79175|C5AR_GORGO C5a anaphylatoxin chemotactic receptor (Fra...    29   6.4  
sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila mela...    29   8.4  
sp|P30993|C5AR_MOUSE C5a anaphylatoxin chemotactic receptor OS=M...    29   8.4  

>sp|Q4V8I3|TENS4_RAT Tensin-4 OS=Rattus norvegicus GN=Tns4 PE=2 SV=1
          Length = 718

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 385 FQLHASAYWLIRSITKDYQILNSIGKTMVGVLYSAD*SSYNSTFGHAIVEQE 230
           F +  S YWL  SIT++ Q +N +     G     D SSY  +FG A+  QE
Sbjct: 443 FVMDTSKYWLKPSITRE-QAINLLRTEKPGTFVIRDSSSYRGSFGLALKVQE 493


>sp|Q8BZ33|TENS4_MOUSE Tensin-4 OS=Mus musculus GN=Tns4 PE=2 SV=1
          Length = 696

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 385 FQLHASAYWLIRSITKDYQILNSIGKTMVGVLYSAD*SSYNSTFGHAIVEQE 230
           F +  S YW   SIT++ Q +N +     G     D SSY  +FG A+  QE
Sbjct: 421 FVMDTSKYWFKPSITRE-QAINLLRTEKPGAFVIRDSSSYRGSFGLALKVQE 471


>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila
            pseudoobscura pseudoobscura GN=poe PE=3 SV=1
          Length = 5381

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = -1

Query: 387  AFSFMHQLIG*YEASQKIIRF*TQLGRQWWAFCTVLINL-----RTIRHLDMQSSNRRVA 223
            A   +HQL   ++ + +++     LG Q  AF  V +N      +TI+HL    + RRVA
Sbjct: 2001 ALQRLHQLEQSFQITDQLMF--ATLGSQEGAFENVRMNYSGDQGQTIKHLLTSGTIRRVA 2058

Query: 222  FCC 214
            FCC
Sbjct: 2059 FCC 2061


>sp|Q8IZW8|TENS4_HUMAN Tensin-4 OS=Homo sapiens GN=TNS4 PE=1 SV=2
          Length = 715

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 385 FQLHASAYWLIRSITKDYQILNSIGKTMVGVLYSAD*SSYNSTFGHAIVEQE 230
           F +  S YW   +IT++ Q +  + K   G     D SSY  +FG A+  QE
Sbjct: 441 FVMDTSKYWFKPNITRE-QAIELLRKEEPGAFVIRDSSSYRGSFGLALKVQE 491


>sp|A1SWR2|LPXH_PSYIN UDP-2,3-diacylglucosamine hydrolase
           OS=Psychromonas ingrahamii (strain 37) GN=lpxH PE=3 SV=1
          Length = 245

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 134 IVRVLSVHNIQLLLHTEVHRLAC 66
           +VR++  H++Q L+H   HR+AC
Sbjct: 180 VVRLMEKHHVQTLIHGHTHRVAC 202


>sp|Q32PJ7|TENS4_BOVIN Tensin-4 OS=Bos taurus GN=TNS4 PE=2 SV=2
          Length = 716

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 385 FQLHASAYWLIRSITKDYQILNSIGKTMVGVLYSAD*SSYNSTFGHAIVEQE 230
           F +  S YW   SI+++ Q +  + K   G     D SSY  +FG A+  QE
Sbjct: 441 FVMDTSKYWFKPSISRE-QAIELLRKEEPGAFIVRDSSSYRGSFGLALKVQE 491


>sp|P79240|C5AR_PANTR C5a anaphylatoxin chemotactic receptor
           (Fragment) OS=Pan troglodytes GN=C5AR1 PE=3 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 257 IWTCNRRTGE*PSAAAFTVLMSCILSYHFWKLGSSEVVIFGIVRVLSVHNIQLLLHT 87
           IW  N    +  S  A  +L + I+ +H W  G +   I   + +L+++   LLL T
Sbjct: 66  IWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACSILPSLILLNMYASILLLAT 122


>sp|P21730|C5AR_HUMAN C5a anaphylatoxin chemotactic receptor OS=Homo
           sapiens GN=C5AR1 PE=1 SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 257 IWTCNRRTGE*PSAAAFTVLMSCILSYHFWKLGSSEVVIFGIVRVLSVHNIQLLLHT 87
           IW  N    +  S  A  +L + I+ +H W  G +   I   + +L+++   LLL T
Sbjct: 73  IWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACSILPSLILLNMYASILLLAT 129


>sp|P04626|ERBB2_HUMAN Receptor tyrosine-protein kinase erbB-2
           OS=Homo sapiens GN=ERBB2 PE=1 SV=1
          Length = 1255

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 242 DCMSKCRIVRRLISTVQNAHHCLP 313
           +C+ +CR+++ L     NA HCLP
Sbjct: 539 ECVEECRVLQGLPREYVNARHCLP 562


>sp|P79234|C5AR_PONPY C5a anaphylatoxin chemotactic receptor
           (Fragment) OS=Pongo pygmaeus GN=C5AR1 PE=3 SV=1
          Length = 340

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 257 IWTCNRRTGE*PSAAAFTVLMSCILSYHFWKLGSSEVVIFGIVRVLSVHNIQLLLHT 87
           IW  N    +  S  A  +L + I+ +H W  G +   I   + +L+++   LLL T
Sbjct: 66  IWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACRILPSLILLNMYASILLLAT 122
tr_hit_id Q8P0R6
Definition tr|Q8P0R6|Q8P0R6_STRP8 Hypothetical phage protein OS=Streptococcus pyogenes serotype M18
Align length 64
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913178|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D06.
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8P0R6|Q8P0R6_STRP8 Hypothetical phage protein OS=Streptococc...    35   1.9  
tr|Q5XBU1|Q5XBU1_STRP6 Phage-related protein OS=Streptococcus py...    35   1.9  
tr|A8Q5V3|A8Q5V3_MALGO Putative uncharacterized protein OS=Malas...    34   3.2  
tr|B4XP88|B4XP88_9ARAC NADH dehydrogenase subunit 1 (Fragment) O...    33   7.1  
tr|Q1VW97|Q1VW97_9FLAO Putative uncharacterized protein OS=Psych...    33   9.3  
tr|A5ZH30|A5ZH30_9BACE Putative uncharacterized protein OS=Bacte...    33   9.3  

>tr|Q8P0R6|Q8P0R6_STRP8 Hypothetical phage protein OS=Streptococcus
           pyogenes serotype M18 GN=spyM18_1243 PE=4 SV=1
          Length = 230

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 285 VLINLRTIRHLDMQSSNRRVAFCCCIYCAHVLYSVLSFLEVGQQRSGYFWNCACTLRAQH 106
           V  NLR I +      N+++AFC C+ C      +L+ +  G+ +S     C  T++A+ 
Sbjct: 12  VFNNLRVISYAGKNKHNKKLAFCECLLCGAKKNMILTEVRTGKSKS---CGCLATIKAKE 68

Query: 105 SIIV 94
             +V
Sbjct: 69  RQMV 72


>tr|Q5XBU1|Q5XBU1_STRP6 Phage-related protein OS=Streptococcus
           pyogenes serotype M6 GN=M6_Spy0987 PE=4 SV=1
          Length = 230

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 285 VLINLRTIRHLDMQSSNRRVAFCCCIYCAHVLYSVLSFLEVGQQRSGYFWNCACTLRAQH 106
           V  NLR I +      N+++AFC C+ C      +L+ +  G+ +S     C  T++A+ 
Sbjct: 12  VFNNLRVISYAGKNKHNKKLAFCECLLCGAKKNMILTEVRTGKSKS---CGCLATIKAKE 68

Query: 105 SIIV 94
             +V
Sbjct: 69  RQMV 72


>tr|A8Q5V3|A8Q5V3_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_2820 PE=4 SV=1
          Length = 433

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 136 PKITTSLLPNFQK**DRIQDMSTVNAAAEGYSPVRR--LHVQMSNCTKINQHCTKRPPLS 309
           P   TSL P+  K   +I     VNA A G     R  +H+ ++ C K  + CT  P LS
Sbjct: 164 PVAFTSLDPSQSKSTSKIYTRPIVNAPASGMPSRHRQNMHLALAQCRKQRESCTGGPGLS 223

Query: 310 SQL 318
           ++L
Sbjct: 224 TEL 226


>tr|B4XP88|B4XP88_9ARAC NADH dehydrogenase subunit 1 (Fragment)
           OS=Dysdera levipes GN=nad1 PE=4 SV=1
          Length = 128

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -2

Query: 221 SAAAFTVLMSCILSYHFWKLGSSEVVIFGIVR----VLSVHNIQLLLHTEVHRLACELVP 54
           S A FT+L   ILSY   + G ++V IFGI++     L + N  + L T  + L   L P
Sbjct: 17  SVAFFTLLERKILSYIQLRKGPNKVSIFGILQPFSDALKLFNKTITLPTLSNTLLVLLTP 76

Query: 53  KNLYLLSIF*FKLL 12
              + LS+  + LL
Sbjct: 77  TLTFFLSLIMWPLL 90


>tr|Q1VW97|Q1VW97_9FLAO Putative uncharacterized protein
           OS=Psychroflexus torquis ATCC 700755 GN=P700755_05309
           PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 364 YWLIRSITKDYQILNSIGKTMVGVLYSAD*SSY 266
           YWL+ + + DY +L+S GKT    L  AD  SY
Sbjct: 192 YWLVTNSSGDYDLLSSQGKTNYAQLKKADRGSY 224


>tr|A5ZH30|A5ZH30_9BACE Putative uncharacterized protein
           OS=Bacteroides caccae ATCC 43185 GN=BACCAC_02202 PE=4
           SV=1
          Length = 433

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 169 GSWAAAKWLFLELCVYSPCTTFNYCCTQKFTDLLVNLYQKICTSLAFFNSNCY 11
           GSW A   LF+ LC+Y              T +LVN + K+  ++AF  S+CY
Sbjct: 12  GSWWALSPLFVFLCLYL------------VTSILVNDFYKVPITVAFLVSSCY 52