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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913180
Clone id YMU001_000027_D08
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTAAAACCAACATCATAGCACCAAAAATTACATCAACGATACAGATATTATA
TCGTTTCTTGCTAGGAATGAAGCACATCAGATCCGCAATTTCGACACAGAGATGCTCGGA
ATACTTCGGCCAGAATAGGGTTTACCAAGCATTCAATAAAAGAAAACTTTCAATTGGAGC
TCACCCCCTTCGAAGTCCATGCTCTCAGCTCCGAGAGAATCACCATTGCTGATGCACAAT
TCTTCCGCTTTGCCAGCACACGAACAACAATTGTCCCGGTTGCAAGCCATCAACAGTGAC
ACTCAAGATGCTCTCACGCATTCAAATGGAGACAAAGAGGCAGACTTAGATGGAGAGAGA
AAGAGGCGACCACCTCCTCTTATACAAGCACACACTACTGTTCGCAGCACCAATTGGCAA
GTTCTCAGTAGGTTGTGAGCAACACAGTAGGCGCAAAAAGCTGTACGCGTTGAAAAGGAC
TCTCCCATGAGGCATTCAATGCGCACAGAGCATCCCCAGCAAGCAGACATCGCAGCCCTT
CTGCATCATCGTTAATCAAGGCCGCCTTCATCCTCGGGATGCACAGCAAAAAACGAATCG
ATG
■■Homology search results ■■ -
sp_hit_id A1SRP6
Definition sp|A1SRP6|ARGR_PSYIN Arginine repressor OS=Psychromonas ingrahamii (strain 37)
Align length 100
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913180|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D08.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1SRP6|ARGR_PSYIN Arginine repressor OS=Psychromonas ingraham...    32   2.4  
sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    32   3.1  
sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus mus...    31   5.3  
sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus no...    30   7.0  
sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe gr...    30   9.1  
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    30   9.1  
sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=O...    30   9.1  
sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS...    30   9.1  
sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5 ...    30   9.1  

>sp|A1SRP6|ARGR_PSYIN Arginine repressor OS=Psychromonas ingrahamii
           (strain 37) GN=argR PE=3 SV=1
          Length = 150

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 28/100 (28%), Positives = 45/100 (45%)
 Frame = +3

Query: 24  NYINDTDIISFLARNEAHQIRNFDTEMLGILRPE*GLPSIQ*KKTFNWSSPPSKSMLSAP 203
           N IN + +   L+++ A + RN   EML  L  E G+P I        +SP    +L   
Sbjct: 36  NNINQSKVSRMLSKSGAVRTRNAKQEMLYCLPAELGIPII--------TSPLKNLVLDID 87

Query: 204 RESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGD 323
           R   +++  +S  P   Q ++RL      T+  L +  GD
Sbjct: 88  RNDSMIVIRTS--PGAAQLIARLLDSIGKTEGILGNIAGD 125


>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus
           norvegicus GN=Rffl PE=1 SV=1
          Length = 362

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +3

Query: 174 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 353
           P  ++ L+ P+ S +    S  LP+   Q++ + A + +TQ A+ H + D E  +  E  
Sbjct: 156 PEQQAFLTQPQSSTV-PPTSPGLPSSPAQVTSVLAQDQETQQAIGHVSQDHEEPIFLEST 214

Query: 354 RRPPP 368
            R PP
Sbjct: 215 ARVPP 219


>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus
           musculus GN=Rasa2 PE=1 SV=1
          Length = 848

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 241 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 336
           CQ T+ + PGCKP T  +    +I ++  R+T
Sbjct: 727 CQETSESTPGCKPCTAGIPADIQIDIDEDRET 758


>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus
           norvegicus GN=Rasa2 PE=2 SV=1
          Length = 847

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 336
           CQ T+   PGCKP T  +    +I ++  R+T
Sbjct: 726 CQETSEGTPGCKPCTAGIPADIQIDIDEDRET 757


>sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe
           grisea GN=RTT106 PE=3 SV=1
          Length = 468

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 110 SEHLCVEIADLMCFIPSKKRYNICI 36
           +E L +EI D+   IP +K+YN+C+
Sbjct: 91  AEELQLEIKDISVSIPQRKKYNLCL 115


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 196 QLRE---NHHC*CTILPLCQHTNNNCPGCK 276
           +LRE   NHH  CT +    H N+ CP CK
Sbjct: 350 ELRELPCNHHFHCTCIDKWLHINSRCPLCK 379


>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57
           OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2
           SV=2
          Length = 540

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = -3

Query: 255 VRVLAKRKNCASAMVILSELRAWTSKGVSSN*KFSFIECLVNPIL---------AEVFRA 103
           VRV+  RKN AS+++    + A T KG     + SF E L  P+L          E+++ 
Sbjct: 345 VRVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKE 404

Query: 102 SLCRNCGSDVLHS 64
               +  +DV+H+
Sbjct: 405 LAFDDVRADVIHA 417


>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase
           OS=Desulfotalea psychrophila GN=pnp PE=3 SV=1
          Length = 692

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 364 GGRLFLSPSKSASLSPFECVRAS*VSLLMACNRDNCCSCAGKAEELCISNGDSLGAESMD 185
           GGR+     K      F  + +S + L++AC R+      GKA+EL  S  + LGA    
Sbjct: 150 GGRIAYIDGKYVLNPTFAELESSSMDLMVACTRNAIVMVEGKADEL--SEDEILGAIFFA 207

Query: 184 FE 179
           FE
Sbjct: 208 FE 209


>sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5
           OS=Mus musculus GN=Agbl5 PE=2 SV=1
          Length = 846

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +3

Query: 162 NWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLD 341
           ++S+  S    S+ +++   M NS + P H  + + L  + S TQ       G       
Sbjct: 670 SFSTGTSTGGSSSSQQNSPQMKNSPSFPFHGSRTAGLPGLGSSTQKVSHRVLGPVREPRC 729

Query: 342 GERKRRPPPLIQAHTT 389
            +R+RR  PL    TT
Sbjct: 730 SDRRRRQQPLNHRSTT 745
tr_hit_id B0CPT8
Definition tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 75
Score (bit) 38.1
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913180|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D08.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    38   0.38 
tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    37   1.1  
tr|A0CH37|A0CH37_PARTE Chromosome undetermined scaffold_18, whol...    37   1.1  
tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein OS=Trich...    36   1.4  
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   2.5  
tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by t...    35   3.2  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   4.2  
tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (st...    35   4.2  
tr|Q55DD7|Q55DD7_DICDI Putative uncharacterized protein OS=Dicty...    34   7.2  
tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein OS=Leish...    34   7.2  
tr|A0DB64|A0DB64_PARTE Chromosome undetermined scaffold_44, whol...    34   7.2  
tr|B6QUH3|B6QUH3_PENMA BZIP transcription factor, putative OS=Pe...    34   7.2  
tr|A2R8I4|A2R8I4_ASPNC Contig An16c0230, complete genome OS=Aspe...    34   7.2  
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...    33   9.4  
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.4  
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.4  

>tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_186956 PE=4 SV=1
          Length = 940

 Score = 38.1 bits (87), Expect = 0.38
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +3

Query: 261 LSRLQAINSDTQDALTHSNGDKEADLDGERKRRPPPLIQAHTTVRSTNWQVLSRL*ATQ* 440
           L RL   + DT+D  T  +G KEA+LD E  +R   L++ + T  S N  ++  L     
Sbjct: 602 LGRLNRKHGDTEDKRTWIHGGKEANLDREATKRKTFLVENNGTASSDNQGIMDSLAGLDM 661

Query: 441 AQKAVRVEKDSPMRH 485
           +  +++    SP  +
Sbjct: 662 SSPSIQAIGSSPQEY 676


>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 174  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINS-DTQDALTHSNGDKEADLDGER 350
            PPS S+ S PR SP L  +SS+ PA ++    LQAI++ D+ D      GD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 351  KRRPPP 368
                 P
Sbjct: 1238 TAEQEP 1243


>tr|A0CH37|A0CH37_PARTE Chromosome undetermined scaffold_18, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00007544001 PE=4 SV=1
          Length = 1543

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +1

Query: 40   QILYRFLLGMKHIRSAISTQRCSEYFGQNRVYQAFNKRKLSIGAHPLRSPCSQLRENHHC 219
            QI YR +L  K I S+ +TQ   + F +  + Q+F+K K S+G   LRS   Q+      
Sbjct: 1019 QINYREMLSRKVINSSYATQL--QIFPKKNLMQSFDKMKKSMGNVLLRSEIDQISN---- 1072

Query: 220  *CTILPLCQHTNNNCPG 270
              T +P+  + N N  G
Sbjct: 1073 -ITYMPIMLYVNTNNTG 1088


>tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_067550 PE=4 SV=1
          Length = 398

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +3

Query: 174 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 353
           P S S  S+PR+S    H SSA P++ + L      N D  D  + S+ DK     G  K
Sbjct: 74  PSSNSTPSSPRKSSA-KHRSSARPSNAKPLISDSKDNDDESD--SESSEDKSRPKTGGGK 130

Query: 354 RRPPPLIQAHTTVR 395
           R+P  +++  T ++
Sbjct: 131 RKPKKIVKKTTVIK 144


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 189  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGE 347
            +LS P  SP L+ N   LPA     SRL  ++    +A + ++GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=M02G9.2
           PE=2 SV=3
          Length = 398

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 17/120 (14%)
 Frame = -2

Query: 382 CACIRGGGR-LFLSPSKSASLSPFECVRAS*VSLLMACNRDN----CCS-CAGKAEELCI 221
           C C  G  R +   PS  A   P+ CV     S L +CNR N    C S C+   E  C 
Sbjct: 65  CVCTEGNVRNIITGPSLPALFKPYNCVSTCESSCLESCNRLNFNMKCSSVCSEACEFTCA 124

Query: 220 SNGDSLGAESMDFEG-----------GELQLKVFFY*MLGKPYSGRSIPSISVSKLRI*C 74
             G S    +                 E +  +    ML KP +  S P I   K++I C
Sbjct: 125 KQGTSTTPTTTQAPATTAMVPLPSNIQEYRFIIPAGSMLTKPTTSTSAPVILSQKIQITC 184


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 174 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 272
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322427 PE=4 SV=1
          Length = 194

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +1

Query: 172 HPLRSPCSQLRENHHC*C-TILPLCQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT*MER 348
           +PLR   SQ    HH  C T +        NC GC      L  L R    + RQT +  
Sbjct: 109 NPLRHKASQAPLPHHAMCETSMNRSDRRERNCCGC----ARLLGLPR----SPRQTLVNP 160

Query: 349 ERGDHLLLYKHTLLFAAPIGKFSVGCEQHSRR 444
           E G H+L  +     ++P G  S G   H  R
Sbjct: 161 EEGSHILWRREHYAGSSPFGLTSSGHRTHFTR 192


>tr|Q55DD7|Q55DD7_DICDI Putative uncharacterized protein
            OS=Dictyostelium discoideum GN=DDB_0216684 PE=4 SV=1
          Length = 1342

 Score = 33.9 bits (76), Expect = 7.2
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +3

Query: 132  LPSIQ*KKTFNWSSPPSKSMLS-APRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 308
            LP    K T +++  P  ++L  A + +P +   SS+ P  +Q  S +++ N ++ +   
Sbjct: 1079 LPPKLSKPTTSFTKLPDSTILKKAAKPTPQIFEPSSSSPQQQQPPSPIKSFNKNSPNRNN 1138

Query: 309  HS---NGDKEADLDGERKRRPPPLIQAHTTVRSTN 404
            ++   NG+   + +G +   PPPL      V + N
Sbjct: 1139 NNGNNNGNNNGNNNGNKTPSPPPLPTRKVNVINNN 1173


>tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM20_V2.4220 PE=4 SV=1
          Length = 1189

 Score = 33.9 bits (76), Expect = 7.2
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +3

Query: 192 LSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERKRRP 362
           L  P   PL+   SSA P  E  ++   A+++++  A T + G+ ++   GE+KRRP
Sbjct: 428 LHHPTLPPLVKAESSAAPTAESPVANRGALSAESA-AATANTGESDSSPAGEKKRRP 483