BP913181
Clone id YMU001_000027_D09
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTCACTTCGTCAAGATCTGCTTCAATCCCATCCTCAGAGATCCTATGCCCGAAAAACTT
TACTCTTCGTTGAGCAAGGTGACACTTCTTTGGGTTGAGTTGCCCTCCACTTTTATCATA
TTGCTTCAATGCCATCCCCATCTTTGCAAAATGATCCTTTCTAGAGCTGTCTAATACTAT
GAAGGGTATCCAACCGTTGCATTATCTCAACTTGATTTTCAAGTAGCCTCTTCAATACCT
TGTGAGTTTCAGCCAAGTCAGCTTCTACTCTCTTCATCTGCTCACGGCACGAAATGGAGT
CTACACAGAGAAAAGGTCGCCTATCTGATGGTGACACATTGAAACGTCTTACTTGCTCTT
CTACAACTGAAACCCGATGTTCTAAAACGCATGGCTTTTCACCCCTCTGGCAAGCTGAAA
CATTTGCAGTCTCTTGAGAGCTGATCGAGTTGGAACTTCCCATGGGAACACCTCTTAAAA
CGAGGCTCCTTTGCCAAAGCAGTGCAACAAGGGAGAGTAACTTTCCAAGGTACTT
■■Homology search results ■■ -
sp_hit_id Q8I7P9
Definition sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster
Align length 68
Score (bit) 38.9
E-value 0.016
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913181|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D09.
(535 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 39 0.016
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 37 0.046
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf... 34 0.51
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg0... 33 0.67
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 33 1.1
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 32 1.5
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 32 1.5
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 32 1.5
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 32 1.5
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 32 1.5
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 32 1.5
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 32 1.5
sp|Q1XH17|TRI72_MOUSE Tripartite motif-containing protein 72 OS=... 32 1.9
sp|A0JPQ4|TRI72_RAT Tripartite motif-containing protein 72 OS=Ra... 32 2.5
sp|Q5TJE1|DAXX_CANFA Death domain-associated protein 6 OS=Canis ... 32 2.5
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 31 3.3
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 31 4.3
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 30 7.4
sp|P17668|NEU3_CATCO Vasotocin-neurophysin VT 1 OS=Catostomus co... 30 7.4
sp|Q6ZMU5|TRI72_HUMAN Tripartite motif-containing protein 72 OS=... 30 9.7
sp|Q9VGJ5|FER3_DROME Protein Fer3 OS=Drosophila melanogaster GN=... 30 9.7

>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003

Score = 38.9 bits (89), Expect = 0.016
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = -2

Query: 201 CNGWIPFIVLDSSRKD-HFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGI 25
C +I I++ S D H+ + + L K+ Q+N +K H +V+F G+ ++ DGI
Sbjct: 277 CYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGI 336

Query: 24 EADLDEVK 1
+AD +V+
Sbjct: 337 KADPKKVR 344


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058

Score = 37.4 bits (85), Expect = 0.046
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV +S +H +G+ ++ K+ +L KC ++ F GH ++ DGI+ + ++++
Sbjct: 369 IVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIE 428


>sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf
curling virus GN=ORF V PE=3 SV=1
Length = 643

Score = 33.9 bits (76), Expect = 0.51
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDG 28
+ +SSR++H +K+ + L++ + G L+ KK +A++ + F G + E+G
Sbjct: 364 VFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLGLTLQENG 414


>sp|P92523|M860_ARATH Uncharacterized mitochondrial protein
AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
Length = 158

Score = 33.5 bits (75), Expect = 0.67
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -2

Query: 141 MGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHR--ISEDGIEAD 16
+GM L+ +++ N KKC Q ++ + GHR IS +G+ AD
Sbjct: 4 LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSAD 47


>sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain NY8153) GN=ORF V PE=3 SV=1
Length = 680

Score = 32.7 bits (73), Expect = 1.1
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISE 34
+V ++ +DH + M L++ ++ G L+ KK L ++++ F G I E
Sbjct: 407 VVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 455


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 32.3 bits (72), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGI---EADLD 10
++ S +H + L++ + +N KC Q +VKF G+ ISE G + ++D
Sbjct: 569 LIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENID 628

Query: 9 EV 4
+V
Sbjct: 629 KV 630


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 32.3 bits (72), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGI---EADLD 10
++ S +H + L++ + +N KC Q +VKF G+ ISE G + ++D
Sbjct: 569 LIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENID 628

Query: 9 EV 4
+V
Sbjct: 629 KV 630


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 32.3 bits (72), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGI---EADLD 10
++ S +H + L++ + +N KC Q +VKF G+ ISE G + ++D
Sbjct: 569 LIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENID 628

Query: 9 EV 4
+V
Sbjct: 629 KV 630


>sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain Strasbourg) GN=ORF V PE=3 SV=1
Length = 679

Score = 32.3 bits (72), Expect = 1.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISE 34
+V ++ +DH + M L++ ++ G L+ KK L ++++ F G I E
Sbjct: 406 LVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain BBC) GN=ORF V PE=3 SV=1
Length = 679

Score = 32.3 bits (72), Expect = 1.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISE 34
+V ++ +DH + M L++ ++ G L+ KK L ++++ F G I E
Sbjct: 406 LVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


tr_hit_id A5B4N4
Definition tr|A5B4N4|A5B4N4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 60
Score (bit) 48.1
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913181|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D09.
(535 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5B4N4|A5B4N4_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5BD55|A5BD55_VITVI Putative uncharacterized protein OS=Vitis... 48 4e-04
tr|A5BU25|A5BU25_VITVI Putative uncharacterized protein OS=Vitis... 41 4e-04
tr|A5BV39|A5BV39_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
tr|A5AVT2|A5AVT2_VITVI Putative uncharacterized protein OS=Vitis... 47 8e-04
tr|A5BBQ6|A5BBQ6_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
tr|A5AGD1|A5AGD1_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
tr|A5C895|A5C895_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
tr|A5BBV5|A5BBV5_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
tr|A5ATN2|A5ATN2_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
tr|A5BW48|A5BW48_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|A5BEX6|A5BEX6_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|A5C645|A5C645_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|A5B0Q3|A5B0Q3_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|Q17329|Q17329_CAEEL Gag, pol and env protein OS=Caenorhabditi... 45 0.002
tr|A5C4H4|A5C4H4_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5BSJ3|A5BSJ3_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5BKR4|A5BKR4_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5BID0|A5BID0_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5B8Z6|A5B8Z6_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5B146|A5B146_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5AN27|A5AN27_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5AJF9|A5AJF9_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5BX91|A5BX91_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5B8U5|A5B8U5_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5B2N4|A5B2N4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5AZA3|A5AZA3_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5AUM3|A5AUM3_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5AGP1|A5AGP1_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5AER4|A5AER4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004

>tr|A5B4N4|A5B4N4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029484 PE=4 SV=1
Length = 814

Score = 48.1 bits (113), Expect = 3e-04
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH A + ++ K +LNPKKC K GH +SE GIE DLD++K
Sbjct: 121 IVKSRGRADHLAALEKFFERIRKFKLRLNPKKCTFGVTFGKLLGHMVSERGIEVDLDKIK 180


>tr|A5BD55|A5BD55_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_001957 PE=4 SV=1
Length = 676

Score = 47.8 bits (112), Expect = 4e-04
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH + ++ K +LNPKKC K GH +SE GIE DLD++K
Sbjct: 371 IVKSRGRADHLTTLERFFERIGKFRLRLNPKKCTFGVPXGKLLGHMVSEKGIEVDLDKIK 430


>tr|A5BU25|A5BU25_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041899 PE=4 SV=1
Length = 852

Score = 40.8 bits (94), Expect(2) = 4e-04
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -2

Query: 192 WIPFIVLDSSRKD----HFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGI 25
+I IV+ S ++ H K+ L++YD +LNP KC KF G +S+ GI
Sbjct: 130 YIDDIVVKSKTREEHVLHLQKVFHLLRKYDM---KLNPSKCAFGVSAGKFLGFMVSQRGI 186

Query: 24 EADLDEVK 1
E LD++K
Sbjct: 187 EVSLDQIK 194



Score = 26.6 bits (57), Expect(2) = 4e-04
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1

Query: 340 NVSPSDRRPFLCVDSISCREQMKRVEADLAE-THKVLKRLLENQVEI 203
N P D P +D ISC K V A + K L+ + VE+
Sbjct: 83 NACPKDSFPLTRIDQISCHSDSKNVGATYQRLMTNIFKPLIGHTVEV 129


>tr|A5BV39|A5BV39_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_017493 PE=4 SV=1
Length = 1009

Score = 47.0 bits (110), Expect = 6e-04
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH + ++ K +LNPKKC K GH +SE GIE DLD++K
Sbjct: 830 IVKSQGRVDHLEALERFFERIRKFRLRLNPKKCTFGVTSGKLLGHMVSERGIEVDLDKIK 889


>tr|A5AVT2|A5AVT2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_039325 PE=4 SV=1
Length = 2093

Score = 46.6 bits (109), Expect = 8e-04
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH A + K+ K +LNPKKC K GH +S+ GIE D D++K
Sbjct: 1252 IVKSRGRADHLAALERFFKRIRKFRLRLNPKKCTFGVTSGKLLGHMVSDRGIEVDPDKIK 1311


>tr|A5BBQ6|A5BBQ6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_014941 PE=4 SV=1
Length = 1180

Score = 46.2 bits (108), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH + ++ K +LNPKKC K FGH +SE GIE D D++K
Sbjct: 558 IVKSRGRADHLDALERFFERIRKFRLRLNPKKCTFGVTSGKLFGHMVSERGIEVDPDKIK 617


>tr|A5AGD1|A5AGD1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041527 PE=4 SV=1
Length = 2066

Score = 46.2 bits (108), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH A + ++ K +LNPKKC K GH +SE GIE D D++K
Sbjct: 1241 IVKSRGRADHLAALERFFERIRKFRLRLNPKKCTFGVTSGKLLGHMVSERGIEVDPDKIK 1300


>tr|A5C895|A5C895_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_042528 PE=4 SV=1
Length = 1648

Score = 45.8 bits (107), Expect = 0.001
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH + ++ K +LNPKKC K GH ++E GIE DLD++K
Sbjct: 1049 IVKSQGRADHLGALERFFERIRKFRLRLNPKKCAFGVTSGKLLGHMVNEWGIEVDLDKIK 1108


>tr|A5BBV5|A5BBV5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_034322 PE=4 SV=1
Length = 1347

Score = 45.8 bits (107), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH A +G ++ K +LNPKKC K H +SE GIE D D++K
Sbjct: 1082 IVKSQGRADHLATLGRFFERIHKFRLRLNPKKCTFGVTFGKLLRHMLSERGIEVDPDKIK 1141


>tr|A5ATN2|A5ATN2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_040254 PE=4 SV=1
Length = 1494

Score = 45.8 bits (107), Expect = 0.001
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = -2

Query: 180 IVLDSSRKDHFAKMGMALKQYDKSGGQLNPKKCHLAQRRVKFFGHRISEDGIEADLDEVK 1
IV R DH A + ++ K +LNPKKC K GH +S+ GIE D D++K
Sbjct: 710 IVKSRGRADHLAALERFFERIQKFRLRLNPKKCTFGVTSGKLLGHMVSDRGIEVDPDKIK 769