BP913183
Clone id YMU001_000027_D11
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACTCGCCATGGAGTCGCAACAGTCATGGTCAAATCAGCAGTTGCAAAGGGGATGCTGGCA
ACTGTTGATACACCTAGAGATGCCTTTTCTGCAGCTCACACAGTTTTGGTCAGAAAATTT
TGTGAAAGAATTTTGCTTAGTGAAGAGATGAAGAAGTCTATCAAGAAAAAACCAAAACGT
ATTCTAGGAAATAGGGACACCCGCCTAAGCGAGCATGGCTTTTTTGGACCGCCACCTTGG
GACCCTTCTTGTGGTGGTGATGGGACTCCAAAATTTCTTTGCGACAACATGGTTGAAGGC
TTAGCCAAACAACTACGCAATGTGGGTTTTGATACAGTGTTTTTAAAGAAGTCTGATCCA
AGGTGAGCTCTCATTGAGTTATCTCTGTTCTTTGATATGCACTGATGATGATATGGATGT
GCTCGTCAGGAAACTGGTTGAATTAGCAGAAAAGGAAGGTAGAGTGCTTCTAACCCAGGA
TGCGAATCTTCTGCGTCGAGGTTTTATCCCTCGTAGTTATGCATACCGTGTCAAAAGCAA
TGGCAAACAGGAG
■■Homology search results ■■ -
sp_hit_id Q4L6C4
Definition sp|Q4L6C4|ODO1_STAHJ 2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus haemolyticus (strain JCSC1435)
Align length 48
Score (bit) 31.2
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913183|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D11.
(553 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4L6C4|ODO1_STAHJ 2-oxoglutarate dehydrogenase E1 component O... 31 3.5
sp|P79386|NR0B1_PIG Nuclear receptor subfamily 0 group B member ... 30 6.0
sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo ... 30 7.9

>sp|Q4L6C4|ODO1_STAHJ 2-oxoglutarate dehydrogenase E1 component
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhA
PE=3 SV=1
Length = 934

Score = 31.2 bits (69), Expect = 3.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2

Query: 239 GTLLVVVMGLQNFFATTWLKA*PNNYAMWVLIQCF*RSLIQGELSLSY 382
G + V+ L N +W++ P N W+ + + +SL+ + +LSY
Sbjct: 856 GEIKEVLNELPNLETVSWVQEEPKNQGAWLFVYPYLKSLVGNQFNLSY 903


>sp|P79386|NR0B1_PIG Nuclear receptor subfamily 0 group B member 1
OS=Sus scrofa GN=NR0B1 PE=2 SV=2
Length = 471

Score = 30.4 bits (67), Expect = 6.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1

Query: 193 RDTRLSEHGFFGPPPWDPSCGGD----GTPKFLCDNMVEGLAKQLRNVGF 330
+ T ++ G P WDPSC +P+ +C+ GL K LR V +
Sbjct: 222 KQTHVAPEAQPGAPWWDPSCAAQRVALKSPQVVCEAASAGLLKTLRFVKY 271


>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo
sapiens GN=HBE269 PE=1 SV=2
Length = 876

Score = 30.0 bits (66), Expect = 7.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1

Query: 271 KFLCDNMVEGLAKQLRNVGFDTVFL 345
+ +CDNM++GLA+ LR +G D L
Sbjct: 631 RVVCDNMLQGLARSLRCLGVDARML 655


tr_hit_id A9SYM9
Definition tr|A9SYM9|A9SYM9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 133
Score (bit) 80.1
E-value 8.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913183|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_D11.
(553 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SYM9|A9SYM9_PHYPA Predicted protein OS=Physcomitrella paten... 80 8e-22
tr|B4FMC3|B4FMC3_MAIZE Putative uncharacterized protein OS=Zea m... 71 3e-16
tr|A7QF03|A7QF03_VITVI Chromosome chr16 scaffold_86, whole genom... 67 4e-16
tr|Q9FIN8|Q9FIN8_ARATH Genomic DNA, chromosome 5, TAC clone:K16H... 67 5e-15
tr|Q7EY60|Q7EY60_ORYSJ Putative uncharacterized protein OSJNBb00... 70 6e-15
tr|Q0D6Q9|Q0D6Q9_ORYSJ Os07g0452400 protein OS=Oryza sativa subs... 70 6e-15
tr|A3BJD4|A3BJD4_ORYSJ Putative uncharacterized protein OS=Oryza... 70 6e-15
tr|A2YKW4|A2YKW4_ORYSI Putative uncharacterized protein OS=Oryza... 69 1e-14
tr|B1I215|B1I215_DESAP Putative uncharacterized protein OS=Desul... 34 0.012
tr|B5ISN2|B5ISN2_9EURY Putative uncharacterized protein OS=Therm... 32 0.029
tr|B6YKW8|B6YKW8_9BACT Putative uncharacterized protein OS=Therm... 32 0.080
tr|A9GT50|A9GT50_SORC5 Putative uncharacterized protein OS=Soran... 40 0.083
tr|A3DP39|A3DP39_STAMF Putative uncharacterized protein OS=Staph... 31 0.10
tr|Q476T4|Q476T4_RALEJ Putative uncharacterized protein OS=Ralst... 32 0.21
tr|B4EEB9|B4EEB9_BURCJ Putative uncharacterized protein OS=Burkh... 30 0.27
tr|A2W5V7|A2W5V7_9BURK Putative uncharacterized protein OS=Burkh... 31 0.35
tr|Q0BJ88|Q0BJ88_BURCM Putative uncharacterized protein OS=Burkh... 31 0.45
tr|Q1BRQ7|Q1BRQ7_BURCA Putative uncharacterized protein OS=Burkh... 29 0.45
tr|A0K3I3|A0K3I3_BURCH Putative uncharacterized protein OS=Burkh... 29 0.45
tr|B1T2B9|B1T2B9_9BURK Putative uncharacterized protein OS=Burkh... 31 0.45
tr|A2BLX6|A2BLX6_HYPBU Conserved archaeal protein OS=Hyperthermu... 34 0.47
tr|B1YR87|B1YR87_BURA4 Putative uncharacterized protein OS=Burkh... 31 0.58
tr|A9AD79|A9AD79_BURM1 Putative uncharacterized protein OS=Burkh... 32 0.76
tr|Q3SGY2|Q3SGY2_THIDA Putative uncharacterized protein OS=Thiob... 28 1.3
tr|Q39KK9|Q39KK9_BURS3 Putative uncharacterized protein OS=Burkh... 30 1.3
tr|B2J5U8|B2J5U8_NOSP7 Putative uncharacterized protein OS=Nosto... 33 1.3
tr|O58469|O58469_PYRHO Putative uncharacterized protein PH0738 O... 30 1.3
tr|A7I6B5|A7I6B5_METB6 Putative uncharacterized protein OS=Metha... 29 1.7
tr|B4VIE6|B4VIE6_9CYAN Putative uncharacterized protein OS=Micro... 32 2.7
tr|A4BNJ4|A4BNJ4_9GAMM Putative uncharacterized protein OS=Nitro... 35 3.5

>tr|A9SYM9|A9SYM9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_189851 PE=4 SV=1
Length = 565

Score = 80.1 bits (196), Expect(2) = 8e-22
Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Frame = +1

Query: 4 RHGVATVMVKSAVAKGMLATVDTP-----RDAFSAAHTVLVRKFCERILLSEEMXXXXXX 168
R G AT MV++A+ ++ P ++ S + V+K+ ER+L++EE
Sbjct: 269 RMGSATEMVEAALRPSPPSSPLEPVGTVKQETSSERYAKFVKKYSERLLVNEESRSRSRA 328

Query: 169 XXXRI------LGNRDTRLSEHGFFGPPPWDPSCGGDGTPKFLCDNMVEGLAKQLRNVGF 330
R L N D L+ + GP PWD GGDGTPKFLCD MVEGLA+QLR VG
Sbjct: 329 RRPRARRARESLKNPDDALNLD-WVGPAPWDVRIGGDGTPKFLCDVMVEGLARQLRCVGV 387

Query: 331 DTVF--LKKSDPR 363
D KKSDPR
Sbjct: 388 DAASSPTKKSDPR 400



Score = 47.4 bits (111), Expect(2) = 8e-22
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKSNGKQE 553
R+LVE A +EGR+LLT+D LLRR +P + +Y VK +GK E
Sbjct: 400 RQLVEQATREGRILLTKDIKLLRRRLMPDNLSYFVKKSGKWE 441


>tr|B4FMC3|B4FMC3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 265

Score = 71.2 bits (173), Expect(2) = 3e-16
Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Frame = +1

Query: 106 LVRKFCERILLSE---EMXXXXXXXXXRILGN---RDTRLSEHGFFGPPPWDPSCGGDGT 267
+V K+ E+I+L+E + +I N +D + GPPPWDPS GGDG
Sbjct: 40 IVTKYSEKIILTESDAKPRTSRRKEKLKIPANAKRKDNVDCSSEWQGPPPWDPSIGGDGY 99

Query: 268 PKFLCDNMVEGLAKQLRNVGFDTVF--LKKSDPR 363
PKFLCD M+EGLAK LR VG D KK +PR
Sbjct: 100 PKFLCDVMIEGLAKHLRCVGIDAAIPSSKKPEPR 133



Score = 37.7 bits (86), Expect(2) = 3e-16
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKS 538
R L+ KEGR+LLT+DA LL+ ++ + YRVKS
Sbjct: 133 RDLLNQTYKEGRILLTRDAKLLKYQYLAGNQVYRVKS 169


>tr|A7QF03|A7QF03_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037224001
PE=4 SV=1
Length = 509

Score = 66.6 bits (161), Expect(2) = 4e-16
Identities = 40/92 (43%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +1

Query: 106 LVRKFCERILLSEEMXXXXXXXXXRILGNRDTRLSEHGFF----GPPPWDPSCGGDGTPK 273
+VRK+ ERILL E + + + + F PPPWD + GGDG PK
Sbjct: 286 IVRKYGERILLKESDRKPKTKKKGKKQSSAVCKEKQIEIFDEWCSPPPWDLTLGGDGCPK 345

Query: 274 FLCDNMVEGLAKQLRNVGFDTV--FLKKSDPR 363
FLCD MVEGLAK LR VG D + KK + R
Sbjct: 346 FLCDVMVEGLAKHLRCVGIDAAIPYSKKPESR 377



Score = 41.6 bits (96), Expect(2) = 4e-16
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKSNGKQE 553
R+L++ A KE RVLLT+D+ LLR ++ ++ YRVK+ K E
Sbjct: 377 RELIDQARKENRVLLTRDSKLLRHEYLIKNQIYRVKNLLKNE 418


>tr|Q9FIN8|Q9FIN8_ARATH Genomic DNA, chromosome 5, TAC clone:K16H17
(Putative uncharacterized protein At5g24340) (At5g24340)
OS=Arabidopsis thaliana GN=At5g24340 PE=2 SV=1
Length = 505

Score = 66.6 bits (161), Expect(2) = 5e-15
Identities = 42/95 (44%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +1

Query: 106 LVRKFCERILLSEE-------MXXXXXXXXXRILGNRDTRLSEHGFFGPPPWDPSCGGDG 264
+VRKF ERILL E + + + GPPPWD S GGDG
Sbjct: 279 IVRKFGERILLKESDLLPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDG 338

Query: 265 TPKFLCDNMVEGLAKQLRNVGFDTVF--LKKSDPR 363
PKFL D MVEGLAK LR VG D KK D R
Sbjct: 339 CPKFLLDVMVEGLAKHLRCVGIDAAIPHSKKPDSR 373



Score = 38.1 bits (87), Expect(2) = 5e-15
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKSNGKQE 553
R+L++ A KE RVLLT+D LLR + + YRVKS K E
Sbjct: 373 RELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLLKNE 414


>tr|Q7EY60|Q7EY60_ORYSJ Putative uncharacterized protein
OSJNBb0062P14.115 OS=Oryza sativa subsp. japonica
GN=OSJNBb0062P14.115 PE=4 SV=1
Length = 501

Score = 69.7 bits (169), Expect(2) = 6e-15
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Frame = +1

Query: 85 FSAAHTVLVRKFCERILLSE---EMXXXXXXXXXRILGNRDTRLSEHG---FFGPPPWDP 246
F T +V K+ E+ILL+E + ++ N + G + G PPWDP
Sbjct: 269 FDDYFTSVVMKYAEKILLTESDTKPRSSRRKEKQKLATNAKCKEKFEGSTEWQGLPPWDP 328

Query: 247 SCGGDGTPKFLCDNMVEGLAKQLRNVGFD--TVFLKKSDPR 363
S GGDG PKFLCD M+EGLAK LR VG D T +K +PR
Sbjct: 329 SAGGDGCPKFLCDVMIEGLAKHLRCVGIDAATPSSRKPEPR 369



Score = 34.7 bits (78), Expect(2) = 6e-15
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKS 538
R+L+ KE RVLLT+D LL+ ++ + YRVKS
Sbjct: 369 RELLNQTYKERRVLLTRDVKLLKYQYLTSNQVYRVKS 405


>tr|Q0D6Q9|Q0D6Q9_ORYSJ Os07g0452400 protein OS=Oryza sativa subsp.
japonica GN=Os07g0452400 PE=4 SV=1
Length = 501

Score = 69.7 bits (169), Expect(2) = 6e-15
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Frame = +1

Query: 85 FSAAHTVLVRKFCERILLSE---EMXXXXXXXXXRILGNRDTRLSEHG---FFGPPPWDP 246
F T +V K+ E+ILL+E + ++ N + G + G PPWDP
Sbjct: 269 FDDYFTSVVMKYAEKILLTESDTKPRSSRRKEKQKLATNAKCKEKFEGSTEWQGLPPWDP 328

Query: 247 SCGGDGTPKFLCDNMVEGLAKQLRNVGFD--TVFLKKSDPR 363
S GGDG PKFLCD M+EGLAK LR VG D T +K +PR
Sbjct: 329 SAGGDGCPKFLCDVMIEGLAKHLRCVGIDAATPSSRKPEPR 369



Score = 34.7 bits (78), Expect(2) = 6e-15
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKS 538
R+L+ KE RVLLT+D LL+ ++ + YRVKS
Sbjct: 369 RELLNQTYKERRVLLTRDVKLLKYQYLTSNQVYRVKS 405


>tr|A3BJD4|A3BJD4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_023156 PE=4 SV=1
Length = 310

Score = 69.7 bits (169), Expect(2) = 6e-15
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Frame = +1

Query: 85 FSAAHTVLVRKFCERILLSE---EMXXXXXXXXXRILGNRDTRLSEHG---FFGPPPWDP 246
F T +V K+ E+ILL+E + ++ N + G + G PPWDP
Sbjct: 78 FDDYFTSVVMKYAEKILLTESDTKPRSSRRKEKQKLATNAKCKEKFEGSTEWQGLPPWDP 137

Query: 247 SCGGDGTPKFLCDNMVEGLAKQLRNVGFD--TVFLKKSDPR 363
S GGDG PKFLCD M+EGLAK LR VG D T +K +PR
Sbjct: 138 SAGGDGCPKFLCDVMIEGLAKHLRCVGIDAATPSSRKPEPR 178



Score = 34.7 bits (78), Expect(2) = 6e-15
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKS 538
R+L+ KE RVLLT+D LL+ ++ + YRVKS
Sbjct: 178 RELLNQTYKERRVLLTRDVKLLKYQYLTSNQVYRVKS 214


>tr|A2YKW4|A2YKW4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25856 PE=4 SV=1
Length = 501

Score = 68.9 bits (167), Expect(2) = 1e-14
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Frame = +1

Query: 85 FSAAHTVLVRKFCERILLSE---EMXXXXXXXXXRILGNRDTRLSEHG---FFGPPPWDP 246
F T +V K+ E+ILL+E + ++ N G + G PPWDP
Sbjct: 269 FDDYFTSVVMKYAEKILLTESDTKPRSSRRKEKQKLATNAKCEEKFEGSTEWQGLPPWDP 328

Query: 247 SCGGDGTPKFLCDNMVEGLAKQLRNVGFD--TVFLKKSDPR 363
S GGDG PKFLCD M+EGLAK LR VG D T +K +PR
Sbjct: 329 SAGGDGCPKFLCDVMIEGLAKHLRCVGIDAATPSSRKPEPR 369



Score = 34.7 bits (78), Expect(2) = 1e-14
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2

Query: 428 RKLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKS 538
R+L+ KE RVLLT+D LL+ ++ + YRVKS
Sbjct: 369 RELLNQTYKERRVLLTRDVKLLKYQYLASNQVYRVKS 405


>tr|B1I215|B1I215_DESAP Putative uncharacterized protein
OS=Desulforudis audaxviator (strain MP104C) GN=Daud_0418
PE=4 SV=1
Length = 262

Score = 34.3 bits (77), Expect(2) = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2

Query: 431 KLVELAEKEGRVLLTQDANLLRRGFIPRSYAYRVKSNGKQ 550
+L E+A +E RV+LT+D LL+R + R Y R Q
Sbjct: 129 ELAEIAAREKRVVLTRDRGLLKRNRVTRGYLVRASDPASQ 168



Score = 28.1 bits (61), Expect(2) = 0.012
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1

Query: 244 PSCGGDGTPKFLCDNMVEGLAKQLRNVGFDTVF 342
P+ G P+F+ D + LA LR GFDT++
Sbjct: 89 PNAGFPFPPRFVLDTHLGRLAAYLRLAGFDTLY 121


>tr|B5ISN2|B5ISN2_9EURY Putative uncharacterized protein
OS=Thermococcus barophilus MP GN=TERMP_1212 PE=4 SV=1
Length = 152

Score = 31.6 bits (70), Expect(2) = 0.029
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2

Query: 404 DDDMDVLVRKLVELAEKEGRVLLTQDANLLRR 499
DDD +++E+A+KEGR++LT+D L +R
Sbjct: 31 DDD------EIIEIAKKEGRIILTRDEELAKR 56



Score = 29.6 bits (65), Expect(2) = 0.029
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1

Query: 268 PKFLCDNMVEGLAKQLRNVGFDTVFLKKSD 357
PK + D M+ LA+ LR G+DTV+ K D
Sbjct: 3 PKLIADMMLGRLARWLRLYGYDTVYGVKDD 32