BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913186|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E02.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q112N2|TRUB_TRIEI tRNA pseudouridine synthase B OS=Trichodesm...    36   0.096
sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protei...    32   1.8  
sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protei...    30   5.2  

>sp|Q112N2|TRUB_TRIEI tRNA pseudouridine synthase B OS=Trichodesmium
           erythraeum (strain IMS101) GN=truB PE=3 SV=1
          Length = 301

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = -1

Query: 156 IQDESIGERDTLTFTSVENNLQMSGAAL------VAHIPQLV----HSKRWHSGQQTP 13
           I+     E ++LTF  VEN LQ +  +L      +AH+P +V     +KRW  GQ+ P
Sbjct: 196 IESSGFSEENSLTFAEVENQLQENKFSLLSIEIALAHLPVIVLITEDAKRWCQGQRLP 253


>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein
           At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
          Length = 677

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 42  WSALIAGCVQQEQRQTSGGCFQRM 113
           WSA+IAGCVQ E    + G F+RM
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRM 411


>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein
           At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
          Length = 903

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 27  RNATSWSALIAGCVQQEQRQTSGGCFQRM*K 119
           +N+ SWSA+IAGCVQ      +   F+ M K
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQK 274

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913186|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E02.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******