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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913187
Clone id YMU001_000027_E03
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTAACATGGAGACATACTCCTTCCTTTCTTCATTGGTTAACTCATTTGAGAGCATTTTTT
GTAGCTTACCTACATCCTCCAATGAGTGCCTACCTGATGATCCCTCTTGGTTTGCCGAGG
TTGCTTCAGATTGTGTTAATCTTCCTGGGTCTTTAAGAATGACTCCCATTACTTCGATGC
TACTGTCACTCCCGTCAGTGGTGGTCGTGTCTTCTCTTGAGGTAGACGAGTAGTCGCTGG
TGGACTCGTCTTCTGAAGCCTCCAAGATCATGTTGCGCTGCTTTCCAATCCTCATGTCGT
AGAATAATGGACTTCCCTTTAGCATCCTTCATCTGGATCAGCCCAGTGCTCCAGTTTTGT
TTAGCTTCCATAGCCATAAGCCAAGGCCTTCCAAGAATAATGGGGTAGCCATCCCCTTTG
TGTGGCATGACGAAGATATCTACCTCCACTTCTGTATTGAATGCTTTTACTTTGACCGCA
TTTACAATGCCTACGCATTTTACTCTTACATTGTTTGCCATCTTGACTCGGCAGGGTGCC
■■Homology search results ■■ -
sp_hit_id Q2NEB3
Definition sp|Q2NEB3|METK_METST S-adenosylmethionine synthetase OS=Methanosphaera stadtmanae (strain DSM 3091)
Align length 28
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913187|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E03.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2NEB3|METK_METST S-adenosylmethionine synthetase OS=Methanos...    31   3.4  
sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader peptid...    30   5.8  
sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader peptid...    30   5.8  
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associat...    30   7.5  
sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C OS=Pectobacte...    30   9.9  

>sp|Q2NEB3|METK_METST S-adenosylmethionine synthetase
           OS=Methanosphaera stadtmanae (strain DSM 3091) GN=mat
           PE=3 SV=1
          Length = 407

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 112 NQEGSSGRHSLEDVGKLQKMLSNELTNE 29
           + E +SG++ +  VGK+  +LSNE+T E
Sbjct: 306 SMEATSGKNPINHVGKIYNLLSNEITRE 333


>sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader
           peptide-processing enzyme OS=Aeromonas salmonicida
           GN=tapD PE=3 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 402
           L  PRSCC         + + PL S++W+    + C A+I+    L  ++
Sbjct: 68  LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader
           peptide-processing enzyme OS=Aeromonas salmonicida
           (strain A449) GN=tapD PE=3 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 402
           L  PRSCC         + + PL S++W+    + C A+I+    L  ++
Sbjct: 68  LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated
            protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2
            SV=1
          Length = 3371

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 362  KQNWSTGLIQMKDAKGKSIILRHEDWKAAQHDLGGFRRRVHQRLLVYLKRRH 207
            K  W+T +IQ +    K   L+H+  KAA     GF+  V +RL+   +RRH
Sbjct: 2491 KLQWATKVIQERYRASKRKALQHDALKAATCARAGFQDMVVRRLIE--ERRH 2540


>sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C
           OS=Pectobacterium carotovorum subsp. carotovorum GN=truC
           PE=3 SV=1
          Length = 376

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 193 RQWWSCLLLR*TSSRWWTRLLKPPRSCCAAFQS 291
           R W+ CL+L+    RW  R  +P R CC +  S
Sbjct: 71  RSWFYCLILK---KRWKGRQKRPRRFCCVSSSS 100
tr_hit_id Q01M69
Definition tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa
Align length 51
Score (bit) 39.3
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913187|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E03.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa G...    39   0.13 
tr|A9RWZ8|A9RWZ8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A9S3I7|A9S3I7_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.30 
tr|A9RIE9|A9RIE9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.50 
tr|Q947Y6|Q947Y6_ORYSA Putative retroelement OS=Oryza sativa GN=...    37   0.66 
tr|Q10RT1|Q10RT1_ORYSJ Retrotransposon protein, putative, unclas...    37   0.66 
tr|A9T4A8|A9T4A8_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.66 
tr|A9RTQ9|A9RTQ9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.66 
tr|A9RIU4|A9RIU4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.66 
tr|A9TY16|A9TY16_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.86 
tr|A9S3K6|A9S3K6_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.86 
tr|A9RCE7|A9RCE7_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.86 
tr|Q94HV4|Q94HV4_ORYSA Putative retroelement OS=Oryza sativa GN=...    36   1.1  
tr|Q7XFZ5|Q7XFZ5_ORYSJ Os10g0317000 protein OS=Oryza sativa subs...    36   1.1  
tr|Q0E1N0|Q0E1N0_ORYSJ Os02g0323900 protein OS=Oryza sativa subs...    36   1.1  
tr|A9TR71|A9TR71_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9T9T9|A9T9T9_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9T699|A9T699_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9T5Z4|A9T5Z4_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9T4A9|A9T4A9_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9S220|A9S220_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9RV53|A9RV53_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9RUF7|A9RUF7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9RAS5|A9RAS5_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|A9U2F8|A9U2F8_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9U121|A9U121_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9TMZ2|A9TMZ2_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9TKM0|A9TKM0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9T8V3|A9T8V3_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  

>tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa
           GN=OSIGBa0114M03.4 PE=4 SV=1
          Length = 1448

 Score = 39.3 bits (90), Expect = 0.13
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAM 369
           +AN  RV C+G++    +         D+FVMP    GY ++LG  WL A+
Sbjct: 385 VANGERVTCIGVIRGAPLTIGGNSFPADLFVMPLA--GYDVVLGTRWLGAL 433


>tr|A9RWZ8|A9RWZ8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71639 PE=4 SV=1
          Length = 700

 Score = 38.9 bits (89), Expect = 0.17
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS 348
           ++ ANN+R K  G    VK++  +  +E   FV       YP+ILG+P++ A + +Q + 
Sbjct: 540 IRGANNIRGKLYGACPDVKIRIGDVAMEQHFFVQVTIS--YPLILGQPYITATQMEQKYL 597

Query: 347 TGLIQMKDAKGKSI 306
           T ++ ++  + K +
Sbjct: 598 TMVLLIQGLREKPL 611


>tr|A9S3I7|A9S3I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74096 PE=4 SV=1
          Length = 1273

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS 348
           ++ ANN R +  G    VK++  +   E   FV       YP+ILG+P++MA   + N  
Sbjct: 629 IRAANNTRGELYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYIMATRMETN-- 684

Query: 347 TGLIQMKDAKGKSIILRHEDWKAAQ---HDLGGFRRRVHQR 234
                + D    + I   +  KA Q    D GG +  V  R
Sbjct: 685 ----VLDDGSAYARIRSEDGRKAVQFLTRDYGGTKEEVLSR 721


>tr|A9RIE9|A9RIE9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66547 PE=4 SV=1
          Length = 669

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAK 360
           ++ ANN R +  G    VK++  N  +E   FV       YP+ILG+P++MA  ME K
Sbjct: 429 IRAANNTRGELYGACPDVKIRIGNVAMEQHFFVQDTTS--YPLILGQPYIMATQMETK 484


>tr|Q947Y6|Q947Y6_ORYSA Putative retroelement OS=Oryza sativa
           GN=OSJNBa0067N01.10 PE=4 SV=1
          Length = 1461

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -2

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS-T 345
           +AN  +V C G++    +        VD++VMP    GY I+LG  W MA   + +W  T
Sbjct: 390 VANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLA--GYDIVLGTQW-MAKLGRMSWDVT 446

Query: 344 GLIQMKDAKGKSIILRHEDWKAAQHDLG 261
                 D +G++I      W+ A +  G
Sbjct: 447 TRALTFDLEGRTIC-----WQGAPNQDG 469


>tr|Q10RT1|Q10RT1_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g05350 PE=4 SV=1
          Length = 1461

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -2

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS-T 345
           +AN  +V C G++    +        VD++VMP    GY I+LG  W MA   + +W  T
Sbjct: 390 VANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLA--GYDIVLGTQW-MAKLGRMSWDVT 446

Query: 344 GLIQMKDAKGKSIILRHEDWKAAQHDLG 261
                 D +G++I      W+ A +  G
Sbjct: 447 TRALTFDLEGRTIC-----WQGAPNQDG 469


>tr|A9T4A8|A9T4A8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_87895 PE=4 SV=1
          Length = 956

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAK-QNW 351
           V  ANN R K  G    VK++  +   E   FV       YP+ILG+P++ A   + + +
Sbjct: 688 VDHANNTRGKLYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYITATRIETKRY 745

Query: 350 STGLIQMKDAKGKSIILRHEDWKAAQHDLGGFRRRVHQRL 231
             G++  + A   S I   E+       +  F+R+  +RL
Sbjct: 746 KRGVLLREGAFDASFIGILENGNIMYKKVEDFKRKERKRL 785


>tr|A9RTQ9|A9RTQ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70435 PE=4 SV=1
          Length = 951

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAKQN 354
           V  ANN R +  G    VK++  +  +E   FV       YP+ILG+P+ MA  ME K  
Sbjct: 565 VDHANNTRGELYGACLDVKIRIGDVAMEQHFFVQDTTS--YPLILGQPYTMATRMETK-- 620

Query: 353 WSTGLIQMKDAKGKSIILRHEDWKAA----QHDLGGFRRRV 243
                  + D       +R EDW+ A      D GG +  V
Sbjct: 621 -------VLDDGSAYARVRSEDWRKAVQFSTRDYGGTKEEV 654


>tr|A9RIU4|A9RIU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66703 PE=4 SV=1
          Length = 814

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAM 369
           ++ ANN +    G    VKVK  N  +E   FV       YP+ILG+P++ AM
Sbjct: 464 IRAANNTQGDLYGACPNVKVKVGNVTIEQKFFVQDTTS--YPVILGQPYITAM 514


>tr|A9TY16|A9TY16_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98789 PE=4 SV=1
          Length = 455

 Score = 36.6 bits (83), Expect = 0.86
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAK 360
           ++ ANN R K  G    VK++  +   E   FV       YP+ILG+P++MA  ME K
Sbjct: 344 IRAANNTRGKLYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYIMATRMETK 399