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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913193
Clone id YMU001_000027_E09
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAAGACAACCCCTGTGATAGTTACTCCAGCCATCTATCTTCTCACCACTGAGATTGAG
ATGGAAGAGCCCCCTGTTCTGGATTTCCCAGTTCCAGCCTCAATAGTCTTCTGACTCTGA
ACTGGAATCTGAATCTTCAGCCCCCTCGTTACCCTGTGCTTCCCTTTCCAATTTGTGTGC
TACCTCCTCCATCCTGGTTCTGGCTTCTGGCTGCTGGTGCACCTGAGCCACTGGGAGTGT
CTGGATGATCTGGAGGAGATCTGGTTCAGCAGCTGAATCCGCCATGCCTCCTGAAGTTCC
CACCCCTGGTTCCAGTCTCCTAACTTACCTGCTGATCATATGGCTCCCCTTTGGCTCTTT
CCCTCATTTCCCAGAGTTTAGCAATCCATTTGCCTGGCTTCGTCATTTTACACACTTCTG
CTCACTTGAGTTTCTCAAACAGATGAAGCCTTTGGCGTTTGTGCTTCCCTTTGTCTGTGT
ATTCCACTGTTTGAATTGATGCTTGAATTTTGGCTCTGGCCAGCTGTGTATAGCA
■■Homology search results ■■ -
sp_hit_id Q9DA60
Definition sp|Q9DA60|CB057_MOUSE Uncharacterized protein C2orf57 homolog OS=Mus musculus
Align length 38
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913193|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E09.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DA60|CB057_MOUSE Uncharacterized protein C2orf57 homolog OS...    32   1.5  
sp|A8GQA9|MUTL_RICAH DNA mismatch repair protein mutL OS=Rickett...    30   5.7  
sp|Q9D9K3|AVEN_MOUSE Cell death regulator Aven OS=Mus musculus G...    30   5.7  
sp|Q9FHK7|Y5516_ARATH Probable receptor kinase At5g05160 OS=Arab...    30   7.4  
sp|Q74AB0|ATKA_GEOSL Potassium-transporting ATPase A chain OS=Ge...    30   7.4  
sp|Q49900|SYY_MYCLE Tyrosyl-tRNA synthetase OS=Mycobacterium lep...    30   9.7  
sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus ...    30   9.7  
sp|Q7NS88|ISPG_CHRVO 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...    30   9.7  
sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EX...    30   9.7  
sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio...    30   9.7  

>sp|Q9DA60|CB057_MOUSE Uncharacterized protein C2orf57 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 530

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 266 SAAESAMPPEVPTPGSSLLTYLLIIWLPFGSFPHFPEF 379
           SAA+S +PP+ P PGS           P GS PH P+F
Sbjct: 358 SAADSGIPPDPPDPGS-----------PGGSPPHSPDF 384


>sp|A8GQA9|MUTL_RICAH DNA mismatch repair protein mutL OS=Rickettsia
           akari (strain Hartford) GN=mutL PE=3 SV=1
          Length = 609

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 276 SAAEPDLLQIIQTLPVAQVHQQPEARTRMEEVAHK 172
           S    D  ++I TLP A++ Q+ E R   E+ AHK
Sbjct: 382 STPNTDCQKLIDTLPHAKIEQEVERRIEREQQAHK 416


>sp|Q9D9K3|AVEN_MOUSE Cell death regulator Aven OS=Mus musculus
           GN=Aven PE=1 SV=1
          Length = 342

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = -1

Query: 319 ETGTRGGNFRRHGGFSC*TRSPPDHPDTPSGSGAPAARSQNQDGGGSTQIGKG 161
           E G RGG  RR G      R  P     P G+    AR    DGGG    G+G
Sbjct: 4   ERGARGGRGRRGG------RERPGGDREPVGAATALARGGCGDGGGRRGRGRG 50


>sp|Q9FHK7|Y5516_ARATH Probable receptor kinase At5g05160
           OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1
          Length = 640

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -2

Query: 267 EPDLLQIIQTLPVAQVHQQPEARTRMEEVAHKLE 166
           E +++Q++Q L +A V + PE+R +MEEVA  +E
Sbjct: 582 EEEMVQMLQ-LALACVARNPESRPKMEEVARMIE 614


>sp|Q74AB0|ATKA_GEOSL Potassium-transporting ATPase A chain
           OS=Geobacter sulfurreducens GN=kdpA PE=3 SV=1
          Length = 592

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 272 AESAMPPEVPTPGSSLLTYLLIIWLPF 352
           A SA P E PTP S++L  LLI+ +PF
Sbjct: 271 ANSAHPFENPTPLSNMLEILLILLIPF 297


>sp|Q49900|SYY_MYCLE Tyrosyl-tRNA synthetase OS=Mycobacterium leprae
           GN=tyrS PE=3 SV=3
          Length = 426

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 371 PEFSNPFAWLRHFTHFCSLEFLKQMKPLAFVLP 469
           PE ++P+AW ++F +    + ++ ++   F+LP
Sbjct: 248 PEMTSPYAWYQYFINTSDADVIRYLRWFTFLLP 280


>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus
           GN=Mex3b PE=2 SV=2
          Length = 601

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 292 RRHGGFSC*TRSPPDHPDTPSGSGAPAARSQNQDGGG 182
           R H G SC   SPP H  T +G    A R ++  GGG
Sbjct: 463 RLHPGTSCPRLSPPLHMATGAGEHHLARRVRSDPGGG 499


>sp|Q7NS88|ISPG_CHRVO 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
           synthase OS=Chromobacterium violaceum GN=ispG PE=3 SV=1
          Length = 427

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 312 EPGVGTSGGMADSAAEPDLLQ--IIQTLPVAQVHQQPEARTRMEEVAHKL 169
           E G+G+ G +A SAA   LLQ  I  T+ ++   Q  EART+   VA +L
Sbjct: 235 EAGMGSKGIVASSAALAVLLQEGIGDTIRISLTPQPGEARTKEVVVAQEL 284


>sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1
           PE=2 SV=2
          Length = 735

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 237 LPVAQVHQQPEARTRMEEVAHKLEREAQGNEGA 139
           LP+    +   AR+R E +A  LE EA GN  A
Sbjct: 82  LPMKLEQENKRARSRKENLARALEHEANGNSSA 114


>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio
           rerio GN=arx PE=2 SV=1
          Length = 453

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 251 WRRSGSAAESAMPPEVPTPGSSLLTYLLIIWLPFGSFPHFPEFSNPFAW 397
           WR+   A   A P  +P PG     + L  +L  G FP  P  +   AW
Sbjct: 270 WRKREKAGVQAHPTGLPFPGPLAAAHPLSHYLEGGPFPPHPHPALESAW 318
tr_hit_id B6LG26
Definition tr|B6LG26|B6LG26_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 49
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913193|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_E09.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LG26|B6LG26_BRAFL Putative uncharacterized protein OS=Branc...    36   1.1  
tr|A1RCM1|A1RCM1_ARTAT Putative membrane protein OS=Arthrobacter...    35   1.9  
tr|Q6SK16|Q6SK16_ARTAU Transfer gene complex protein-like protei...    35   1.9  
tr|B0DW85|B0DW85_LACBS Predicted protein OS=Laccaria bicolor (st...    28   2.2  
tr|B7PHF6|B7PHF6_IXOSC Putative uncharacterized protein OS=Ixode...    34   4.2  
tr|B4MSI7|B4MSI7_DROWI GK19382 OS=Drosophila willistoni GN=GK193...    34   4.2  
tr|Q5JKB0|Q5JKB0_ORYSJ Putative replication licensing factor MCM...    33   7.2  
tr|A2ZU60|A2ZU60_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|Q4N349|Q4N349_THEPA Putative uncharacterized protein OS=Theil...    33   7.2  
tr|Q29HZ6|Q29HZ6_DROPS GA13738 OS=Drosophila pseudoobscura pseud...    33   7.2  
tr|B4J5G3|B4J5G3_DROGR GH21043 OS=Drosophila grimshawi GN=GH2104...    33   9.3  

>tr|B6LG26|B6LG26_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_70173 PE=4 SV=1
          Length = 189

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 308 QGWELQEAWRIQLLNQISSRSSRHSQWLRCTSSQKPEPGWRR*HTNWKG 162
           QG  L   W +++ NQ+S RS RH  W     SQ   P W R   +++G
Sbjct: 28  QGPALWNCWNLEVSNQVSDRSRRHG-WKLQQLSQNRAPDWWRRRVDYRG 75


>tr|A1RCM1|A1RCM1_ARTAT Putative membrane protein OS=Arthrobacter
           aurescens (strain TC1) GN=AAur_pTC10111 PE=4 SV=1
          Length = 617

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 319 ETGTRGGNFRRHGGFSC*TRSPPDHPDTPSGSGAPAARS--QNQDGGGSTQIGKG 161
           ++G  GG   RHGG    T+  P       G GAP  RS      GG  +Q G+G
Sbjct: 480 QSGNSGGGGNRHGGGKASTQGKPGAEQETPGLGAPGRRSTASRVSGGQGSQPGQG 534


>tr|Q6SK16|Q6SK16_ARTAU Transfer gene complex protein-like protein
           OS=Arthrobacter aurescens PE=4 SV=1
          Length = 635

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 319 ETGTRGGNFRRHGGFSC*TRSPPDHPDTPSGSGAPAARS--QNQDGGGSTQIGKG 161
           ++G  GG   RHGG    T+  P       G GAP  RS      GG  +Q G+G
Sbjct: 498 QSGNSGGGGNRHGGGKASTQGKPGAEQETPGLGAPGRRSTASRVSGGQGSQPGQG 552


>tr|B0DW85|B0DW85_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_333538 PE=4 SV=1
          Length = 208

 Score = 27.7 bits (60), Expect(2) = 2.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 22  VTPAIYLLTTEIEMEEPPVLDFPVPASIVF*L*TGI*IFSPLVTLCFPFQFVCYLLH 192
           +TP  +LLTT      PP + +P+P+            F P     FP  F+ Y LH
Sbjct: 73  LTPPPFLLTTPSLSLPPPFIPYPLPSFPT--------PFIPYPLPSFPTPFIPYPLH 121



 Score = 26.6 bits (57), Expect(2) = 2.2
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
 Frame = +2

Query: 281 AMPPEVPTPG-SSLLTYLLIIWLPFGS-------FPHFPEFSNPFAWLRHFTHFCSLEFL 436
           ++PP  PTP   SL+ YL     PF S       FP  P    P     H  HF  L  L
Sbjct: 122 SLPPSFPTPCLHSLIPYLPAP--PFSSSPPSSSSFPPLPSTPTPPLLPPHSLHFSPLPPL 179

Query: 437 KQMKPL 454
             + PL
Sbjct: 180 LPLPPL 185


>tr|B7PHF6|B7PHF6_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW017743 PE=4 SV=1
          Length = 110

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -1

Query: 307 RGGNFRRHGGF------SC*TRSPPDHPDTPSGSGAPAA 209
           R G FRR  G+      S   RSPP  P  PSGSG PA+
Sbjct: 13  RPGQFRRRAGWPKGAARSTRHRSPPSGPRVPSGSGGPAS 51


>tr|B4MSI7|B4MSI7_DROWI GK19382 OS=Drosophila willistoni GN=GK19382
           PE=4 SV=1
          Length = 144

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +2

Query: 191 ILVLASGCWCT*ATGSVW--MIWRRSGSAAESAMPPEVPTPGSSLLTYLLIIWLPFGSFP 364
           +L+L   C C    GS W    WR+  S +  A   E   P   L TY   +W P    P
Sbjct: 49  VLLLILCCLCDYNYGS-WASQCWRKHNSGSIQAPDGEFKRPFGILCTYRCFLWFP----P 103

Query: 365 HFP--EFSNPFAWLRHFTHF 418
            +P  EF       RHFT F
Sbjct: 104 VYPYCEFIFDLRLSRHFTSF 123


>tr|Q5JKB0|Q5JKB0_ORYSJ Putative replication licensing factor MCM4
           OS=Oryza sativa subsp. japonica GN=OSJNBa0051H17.26 PE=3
           SV=1
          Length = 911

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 319 ETGTRGGNFRRHGGFSC*TRSP-------PDHPDTPSGSGAPAARSQNQDGGG 182
           ++G RGG  RR G  S    SP       P HP   + SG  AAR Q Q+  G
Sbjct: 39  QSGRRGGGRRRRGSASPYPSSPSLGGFETPPHPGRRTPSGGAAARQQRQNWTG 91


>tr|A2ZU60|A2ZU60_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002082 PE=3 SV=1
          Length = 853

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 319 ETGTRGGNFRRHGGFSC*TRSP-------PDHPDTPSGSGAPAARSQNQDGGG 182
           ++G RGG  RR G  S    SP       P HP   + SG  AAR Q Q+  G
Sbjct: 39  QSGRRGGGRRRRGSASPYPSSPSLGGFETPPHPGRRTPSGGAAARQQRQNWTG 91


>tr|Q4N349|Q4N349_THEPA Putative uncharacterized protein
           OS=Theileria parva GN=TP04_0138 PE=4 SV=1
          Length = 413

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 368 FPEFSNPFAWLRHFTHFCSLEFLKQMKPLAF 460
           +PE+  P+ W+  F+HF  LE+L   KP  F
Sbjct: 98  YPEYETPYEWISGFSHF--LEYLNLYKPCVF 126


>tr|Q29HZ6|Q29HZ6_DROPS GA13738 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA13738 PE=4 SV=2
          Length = 150

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
 Frame = +2

Query: 191 ILVLASGCWCT*ATGSVW--MIWRRSGSAAESAMPPEVPTPGSSLLTYLLIIWLPFGSFP 364
           +L+L   C C    GS W    WR+  S +      E   P   L TY   +W P    P
Sbjct: 54  VLLLVLCCLCDYNYGS-WASQCWRKHNSGSIQTADGEFKRPFGILCTYRCFLWFP----P 108

Query: 365 HFP--EFSNPFAWLRHFTHF 418
            +P  EF       RHFT F
Sbjct: 109 IYPYCEFIFDLRLSRHFTSF 128