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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913206
Clone id YMU001_000027_F10
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCCAACCTTTCTTTTTGCCTTTACAACTAATAACCAAGGGGTCTTTTACGCATGCATC
CCATGCAATCGGTGCTCAGTGCACTGATTTCCGAGCCGCAAAATGCTACCAAAAGCAATC
GATCCGGAGTCCAAGCTTGCCAATCCATGCCGCACTTGACCTTTATCGAGGCCGCAAACC
ATGGCCACGAAAACCGAGGAGAAACGTCCGAGACCGCTCTGGCCAGCGAGTGCTATCAAA
CTTTCAATGGGTATAACGCATGCACCGAGATTCCGATTTCCGAGCCATGACTTCTTGCTT
ACTCCCATGACGCGGACTGCCCTCTAGGACCTGGTCAATCCCAAAAAAATCGCCAGATGG
TGCAACTCTTAATGCGGTCAAGTGGGCGTACACCTAGCCCCCGACAAATCTTCCATTGAC
CATAACTTTCCTATCCGAGACCCGATCGCCAATCCAGAAAGACCGGCATTCTCCACAACT
CAAGCACTTCAATCCTATCCGCTGACACCAGCTCTGACCACTTGTCCATACCTGCCCTGT
TCGTCAAGGATCTGCAAAGCCTTCTATCTTTAGACAACCGTATCTCGCACACCGTGGCTC
CATTTGACG
■■Homology search results ■■ -
sp_hit_id A5W1K7
Definition sp|A5W1K7|NHAA2_PSEP1 Na(+)/H(+) antiporter nhaA 2 OS=Pseudomonas putida (strain F1 / ATCC 700007)
Align length 60
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913206|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_F10.
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5W1K7|NHAA2_PSEP1 Na(+)/H(+) antiporter nhaA 2 OS=Pseudomona...    33   1.5  
sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=H...    32   2.5  
sp|A2QSC9|ATG2_ASPNC Autophagy-related protein 2 OS=Aspergillus ...    32   3.3  
sp|Q4JV56|TRUB_CORJK tRNA pseudouridine synthase B OS=Corynebact...    31   5.6  
sp|P14240|L_LYCVA RNA-directed RNA polymerase OS=Lymphocytic cho...    31   5.6  
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate ...    30   7.5  
sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN...    30   9.7  
sp|Q9W1I2|BGCN_DROME Benign gonial cell neoplasm protein OS=Dros...    30   9.7  

>sp|A5W1K7|NHAA2_PSEP1 Na(+)/H(+) antiporter nhaA 2 OS=Pseudomonas
           putida (strain F1 / ATCC 700007) GN=nhaA2 PE=3 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -2

Query: 320 AVRVMGVSKKSWLGNRNLGACVIPIE----SLIALAGQSGLGRFSSVFVAMVCGLDKGQV 153
           A + +G+   SWL  R LG CV+P E    S++ +   +G+G   S+F+A +  +D G +
Sbjct: 356 AGKPLGIVSVSWLMVR-LGWCVLPAEINWRSIVLVGLLAGIGFTMSIFIANLAFVDPGSL 414


>sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=Homo
           sapiens GN=PPP5C PE=1 SV=1
          Length = 499

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +3

Query: 93  EPQNATKSNRSGVQACQSMPHLT--FIEAAN-----HGHENRGETSETALASECYQTFNG 251
           +PQN    ++ GV +CQ  P +T  F+E  N       HE + E  E A    C   F+ 
Sbjct: 390 QPQNGRSISKRGV-SCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSA 448

Query: 252 YNACTEI 272
            N C ++
Sbjct: 449 PNYCDQM 455


>sp|A2QSC9|ATG2_ASPNC Autophagy-related protein 2 OS=Aspergillus niger
            (strain CBS 513.88 / FGSC A1513) GN=atg2 PE=3 SV=1
          Length = 2221

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 291  LLAYSHDADCPLGPGQSQKN---RQMVQLLMRSSGRTPSPRQIFH*P*LSYPRPDRQSRK 461
            L A+S+D++     GQ Q+    RQ ++L +R      S + + H P  SYP     S  
Sbjct: 788  LHAFSNDSEVSQQTGQPQEEVQKRQAIKLALRKF----SIKFVEHVPGHSYPAETDSSPF 843

Query: 462  TGILHNXXXXXXXXXXXXXHLSI 530
             G+LHN             HLSI
Sbjct: 844  FGLLHNDILLQTCLSGLEAHLSI 866


>sp|Q4JV56|TRUB_CORJK tRNA pseudouridine synthase B
           OS=Corynebacterium jeikeium (strain K411) GN=truB PE=3
           SV=1
          Length = 308

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 302 VSKKSWL---GNRNLGACVIPIESLIALAGQSGLGRFSSVFVAMVCGLD 165
           +S   WL   GN+ + A V P    IAL  + G  R SSVFVA   G+D
Sbjct: 261 LSLGKWLKPVGNKGVRAAVTPSGQAIALVEEKG-KRASSVFVARPAGMD 308


>sp|P14240|L_LYCVA RNA-directed RNA polymerase OS=Lymphocytic
           choriomeningitis virus (strain Armstrong) GN=L PE=1 SV=1
          Length = 2210

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 36  PRGLLRMHPMQSVLSALISEPQNATKSNRSGVQACQSMPHLTFIEAANHGHENRGETS 209
           P GL++     S L   +++  +    +R  V++C   P + FI A  HGHE   ETS
Sbjct: 263 PEGLIKEF---SELYENLADSDDILTLSREAVESC---PLMRFITAETHGHERGSETS 314


>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate
           proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1
           SV=1
          Length = 3707

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 208 PRPLWPASAIKLSMGITHAPRFRFPS 285
           P PLWP +A      +TH P+F  PS
Sbjct: 253 PLPLWPEAATTPPPPVTHGPQFLLPS 278


>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus
            GN=Lama2 PE=1 SV=1
          Length = 3106

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
 Frame = -1

Query: 600  EPRCARYG-----CLKIEGFAD--P*RTGQVWTSGQSWCQRIGLKCLSCG-ECRSFWIGD 445
            E  C  YG     C ++ G     P  TG+     + W  R G +C+ CG EC    +GD
Sbjct: 1522 ECECDPYGSLPVPCDRVTGLCTCRPGATGRKCDGCEHWHAREGAECVFCGDECTGLLLGD 1581

Query: 444  RVSDRKVMVNGRFVG 400
                 ++ +N    G
Sbjct: 1582 LARLEQMTMNINLTG 1596


>sp|Q9W1I2|BGCN_DROME Benign gonial cell neoplasm protein
           OS=Drosophila melanogaster GN=bgcn PE=1 SV=2
          Length = 1215

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = -1

Query: 225 WPERSRTFLLGFRGHGLRPR*RSSAAWIGKLGLRIDCFW*HFAARKSVH*APIAWDACVK 46
           W E    FL  F GH L      S                 +A+R  V+ A + WD  V 
Sbjct: 137 WTEAQLNFLTAFLGHSLSDEILQSL----------------YASRVIVYNAALCWDKSVF 180

Query: 45  DPLVI--SCKGKK 13
            PLVI   C+ KK
Sbjct: 181 LPLVILDDCRNKK 193
tr_hit_id Q672V4
Definition tr|Q672V4|Q672V4_ASPFL Monooxygenase OS=Aspergillus flavus
Align length 59
Score (bit) 34.7
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913206|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_F10.
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q672V4|Q672V4_ASPFL Monooxygenase OS=Aspergillus flavus GN=at...    35   4.4  
tr|Q3J6U9|Q3J6U9_NITOC Putative uncharacterized protein OS=Nitro...    34   5.8  
tr|Q2U5E8|Q2U5E8_ASPOR Predicted protein OS=Aspergillus oryzae G...    34   5.8  
tr|B8NL56|B8NL56_ASPFL FAD-dependent monooxygenase AtmM OS=Asper...    34   5.8  
tr|A0E9H5|A0E9H5_PARTE Chromosome undetermined scaffold_84, whol...    34   7.5  
tr|Q2T6X7|Q2T6X7_BURTA Hep_Hag family OS=Burkholderia thailanden...    34   7.6  
tr|Q0UQQ4|Q0UQQ4_PHANO Putative uncharacterized protein OS=Phaeo...    34   7.6  
tr|A7MB37|A7MB37_BOVIN AKAP8 protein OS=Bos taurus GN=AKAP8 PE=2...    33   9.8  

>tr|Q672V4|Q672V4_ASPFL Monooxygenase OS=Aspergillus flavus GN=atmM
           PE=4 SV=1
          Length = 479

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 75  LSALISEPQNATKSNRSGVQACQSMPHLTFIEAANHGH--ENRGETSETALASECYQTF 245
           L  + + P     S+   V+ C+++ H   +  A  GH  ENR  TS TAL    + T+
Sbjct: 241 LDDMYTYPDTVRFSSADAVRTCENIVHFPLVNGATFGHVWENREVTSMTALEENIFNTW 299


>tr|Q3J6U9|Q3J6U9_NITOC Putative uncharacterized protein
           OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
           11848) GN=Noc_3005 PE=4 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 299 SKKSWLGNRNLGACVIPIESLIALAGQSGLGRFSSVFV--AMVCGLDKGQVRHGLASL 132
           S  SW    NLG CV    SL  L G    GR +S+    A VCG  K QV  G+A L
Sbjct: 53  SANSWRNASNLGPCVRRAVSLRTLTG----GRHTSLAFSNADVCGFRKAQVLSGIACL 106


>tr|Q2U5E8|Q2U5E8_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090113000174 PE=4 SV=1
          Length = 506

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  PQNATKSNRSGVQACQSMPHLTFIEAANHGH--ENRGETSETALASECYQTF 245
           P     S+   V+ C+++ H   +  A  GH  ENR  TS TAL    + T+
Sbjct: 257 PDTVRFSSADAVRTCENIAHFPLVNGATFGHVWENREVTSMTALEENIFNTW 308


>tr|B8NL56|B8NL56_ASPFL FAD-dependent monooxygenase AtmM
           OS=Aspergillus flavus NRRL3357 GN=AFLA_096400 PE=4 SV=1
          Length = 497

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  PQNATKSNRSGVQACQSMPHLTFIEAANHGH--ENRGETSETALASECYQTF 245
           P     S+   V+ C+++ H   +  A  GH  ENR  TS TAL    + T+
Sbjct: 248 PDTVRFSSADAVRTCENIAHFPLVNGATFGHVWENREVTSMTALEENIFNTW 299


>tr|A0E9H5|A0E9H5_PARTE Chromosome undetermined scaffold_84, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00024673001 PE=4 SV=1
          Length = 427

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   QPFFLPLQLITKGSFTHASHAIGAQCTDFRAAKCYQKQSIRSPSLPIHAAL 157
           Q FF+PLQ + KGS +           +F AAKC QK+ ++   + I+  L
Sbjct: 107 QDFFIPLQTLGKGSSSKVLLVKEIDSGEFFAAKCVQKEEMQFQEIEINNQL 157


>tr|Q2T6X7|Q2T6X7_BURTA Hep_Hag family OS=Burkholderia thailandensis
           (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
           GN=BTH_II0875 PE=4 SV=1
          Length = 533

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
 Frame = +1

Query: 109 PKAIDPESKLANPCRT*PLSRPQTMATKTEEKRPRPLWPASAIK-------LSMGITHAP 267
           P   D ES    P  T P SRP++ A       P    PASA          S   T +P
Sbjct: 94  PSWSDDESPPPTPIATRPASRPESAARSPRHSSPPHSPPASAESPSPRSPDASPSRTPSP 153

Query: 268 RFRFPSHDFLLTPMTR 315
            F FPS     TP T+
Sbjct: 154 TFSFPSPSRTSTPRTQ 169


>tr|Q0UQQ4|Q0UQQ4_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_05910 PE=4 SV=2
          Length = 336

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 26/100 (26%), Positives = 41/100 (41%)
 Frame = +1

Query: 160 PLSRPQTMATKTEEKRPRPLWPASAIKLSMGITHAPRFRFPSHDFLLTPMTRTAL*DLVN 339
           PLSRPQ    + +    RP  P  A+K + G + +  F  P  D    P + T L   + 
Sbjct: 203 PLSRPQQTYDQIDGLAQRPNQPPPALKFTGGNSTSSSFNSPLPDLQPIPFSLTRL-AAIE 261

Query: 340 PKKIARWCNS*CGQVGVHLAPDKSSIDHNFPIRDPIANPE 459
            + ++R               D   ID   P + P+A+P+
Sbjct: 262 SRPVSR---------------DHMDIDTKPPFKTPVASPK 286


>tr|A7MB37|A7MB37_BOVIN AKAP8 protein OS=Bos taurus GN=AKAP8 PE=2
           SV=1
          Length = 683

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 96  PQNATKSNRSGVQACQSMPHLTFIEAANHGHENRGETSETALASECYQTFNGYNACTEIP 275
           P+  T S+ S +        +   E    G  + GE  +   +S  +Q+F  Y++   +P
Sbjct: 81  PEPCTDSSDSLIAKINQRLDMMSKEGGRGGSSSGGEGMQDRESSFRFQSFESYDSRPCLP 140

Query: 276 ISEP*LLAYSHDADCPLGPGQS 341
              P   +YS+D D  LGP ++
Sbjct: 141 EHNPYRPSYSYDYDFDLGPNRN 162