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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913211
Clone id YMU001_000027_G03
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATCCTTGTGCCCTCTTCTAATCTGCTTTTTTGACAGGAATAACCTTCTCTACTTGCTTT
TGTGCAAAATCCATGTGCAAGATCACAGGCACATTCACTAGCAGCTGCACCACTTTGAGT
AAAGTAATTTTTGTAGCATTCCTTTAGAAACTTTTCTAATGAAAAATCAAGATAATCCTT
TTGATAACCGTTACTTTGTAAGGTGCTATTCACTACTGACTCAGGAAGATCTTTCTCTGC
AACGCACAAGTCCCTAAATAATGCTGCAACTGCAGTAAAAGTTGATACAATGTCTGCCTC
ATGTTCATCTTTATAGGGCTCGCTTCTCGCAGGATCTATATCGAACCAAGGTGTGGGTCT
ATCACTCGAAATAAACTCTTGAAATGCCATCTCCTTGGATAACCAATCTAATTCTGCATG
CTCTCTTTTGCATATTTCAGGGTCTTCAATGTGTGTTGCAC
■■Homology search results ■■ -
sp_hit_id Q6MEN1
Definition sp|Q6MEN1|SYE_PARUW Glutamyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25)
Align length 69
Score (bit) 32.7
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913211|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G03.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MEN1|SYE_PARUW Glutamyl-tRNA synthetase OS=Protochlamydia a...    33   0.77 
sp|Q9ULV3|CIZ1_HUMAN Cip1-interacting zinc finger protein OS=Hom...    30   6.5  
sp|Q6BZ78|PAN2_DEBHA PAB-dependent poly(A)-specific ribonuclease...    29   8.5  
sp|Q8VEG6|CNO6L_MOUSE CCR4-NOT transcription complex subunit 6-l...    29   8.5  
sp|Q96LI5|CNO6L_HUMAN CCR4-NOT transcription complex subunit 6-l...    29   8.5  

>sp|Q6MEN1|SYE_PARUW Glutamyl-tRNA synthetase OS=Protochlamydia
           amoebophila (strain UWE25) GN=gltX PE=3 SV=1
          Length = 502

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -3

Query: 453 HIEDPEICKREHAELDW-------LSKEMAFQEFISSDRPTPWFDIDP---ARSEPYKDE 304
           H+   EI +RE AEL +       L+ E  +++ I      PW DID     +S+ +   
Sbjct: 135 HLTPDEIIEREQAELSYVIRLKVPLNGECVYEDAIKKRMTFPWADIDDQVLLKSDGFPTY 194

Query: 303 HEADIVSTF 277
           H A++V  +
Sbjct: 195 HLANVVDDY 203


>sp|Q9ULV3|CIZ1_HUMAN Cip1-interacting zinc finger protein OS=Homo
            sapiens GN=CIZ1 PE=1 SV=1
          Length = 898

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = -3

Query: 429  KREHAELDWLSKEMAFQE---FISSDRPTPWFDIDPARSEPYKDEHEADIVSTFTAVAAL 259
            K +  EL  L KE+A Q+   FI+ D     F+ D    E  +DE E ++          
Sbjct: 710  KDKAKELKSLEKEIAGQDEDHFITVDA-VGCFEGDEEEEEDDEDEEEIEVEEELCKQVRS 768

Query: 258  FRDLCVAEKDLPESVVNSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASEC 91
             RD+   E    E+   +T     Y  D+L   +    + C+K Y + SGA  S C
Sbjct: 769  -RDISREEWKGSETYSPNT----AYGVDFLVPVMGYICRICHKFYHSNSGAQLSHC 819


>sp|Q6BZ78|PAN2_DEBHA PAB-dependent poly(A)-specific ribonuclease
           subunit PAN2 OS=Debaryomyces hansenii GN=PAN2 PE=3 SV=2
          Length = 1124

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
 Frame = -3

Query: 399 SKEMAFQEFISSDRPTPWFDIDPARSEPYKDEHEADIVSTFTAVAALFRDLCVAEKD--- 229
           +K+  F +FIS       FD + +    YK  ++ ++ + ++ +   +    V + D   
Sbjct: 448 TKQKLFPKFISEKNGHDSFDNENSNIFEYKLSNKFEVPNCYSNLKIQYSKFGVEDFDFSF 507

Query: 228 ------------LPESVVNSTLQSNGYQKDYLDFSLEKFLKECYKNYFT---QSG-AAAS 97
                       L  S +NS LQ   Y   + +F ++  LKE   N  T   Q+G    S
Sbjct: 508 YNRTKYSGLENHLDNSYINSLLQLYKYSPVFQNFIIKHLLKEWLPNDLTTIIQNGNPQGS 567

Query: 96  ECACDLAHGFCTKASREGYSCQKS 25
               +L + F       G +C+ S
Sbjct: 568 SILNELGYIFDMMNKSHGKNCKTS 591


>sp|Q8VEG6|CNO6L_MOUSE CCR4-NOT transcription complex subunit 6-like
           OS=Mus musculus GN=Cnot6l PE=1 SV=2
          Length = 555

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -3

Query: 249 LCVAEKDLPESVVNSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASECACDLAHG 70
           LC     LP+S V   L + G   ++ DF  E    EC  N+       +SE    + HG
Sbjct: 407 LCADLNSLPDSGVVEYLSNGGVADNHKDFK-ELRYNECLMNFSCSGKNGSSEGR--ITHG 463

Query: 69  FCTKASRE 46
           F  K++ E
Sbjct: 464 FQLKSAYE 471


>sp|Q96LI5|CNO6L_HUMAN CCR4-NOT transcription complex subunit 6-like
           OS=Homo sapiens GN=CNOT6L PE=1 SV=2
          Length = 555

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -3

Query: 249 LCVAEKDLPESVVNSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASECACDLAHG 70
           LC     LP+S V   L + G   ++ DF  E    EC  N+       +SE    + HG
Sbjct: 407 LCADLNSLPDSGVVEYLSNGGVADNHKDFK-ELRYNECLMNFSCNGKNGSSEGR--ITHG 463

Query: 69  FCTKASRE 46
           F  K++ E
Sbjct: 464 FQLKSAYE 471
tr_hit_id B4U642
Definition tr|B4U642|B4U642_HYDS0 Peptide chain release factor 2 OS=Hydrogenobaculum sp. (strain Y04AAS1)
Align length 150
Score (bit) 40.4
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913211|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G03.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4U642|B4U642_HYDS0 Peptide chain release factor 2 OS=Hydroge...    40   0.044
tr|Q5E057|Q5E057_VIBF1 Putative uncharacterized protein OS=Vibri...    38   0.22 
tr|Q17Q32|Q17Q32_AEDAE Enolase-phosphatase e-1 OS=Aedes aegypti ...    34   3.2  
tr|B0EDS1|B0EDS1_ENTDI Furin repeat-containing protein, putative...    34   3.2  
tr|A9E3N0|A9E3N0_ENTDI Intermediate subunit of galactose lectin ...    34   3.2  
tr|A9E3P3|A9E3P3_ENTDI Intermediate subunit of galactose lectin ...    34   4.1  
tr|A7JU94|A7JU94_PASHA Trk family potassium (K+) transporter, NA...    33   9.2  
tr|B0EAY6|B0EAY6_ENTDI Furin repeat-containing protein, putative...    33   9.2  
tr|A9E3Q1|A9E3Q1_ENTDI Intermediate subunit of galactose lectin ...    33   9.2  
tr|A9E3N7|A9E3N7_ENTDI Intermediate subunit of galactose lectin ...    33   9.2  

>tr|B4U642|B4U642_HYDS0 Peptide chain release factor 2
           OS=Hydrogenobaculum sp. (strain Y04AAS1)
           GN=HY04AAS1_0020 PE=4 SV=1
          Length = 375

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
 Frame = -3

Query: 444 DPEICKREHAELDWLSKEMAFQEFISSDRPTPWFDIDPARSEPYKDEHEADIVSTFTAVA 265
           D E  K+E  + D +  E  F           W D + A+S   K +   D ++T+T++ 
Sbjct: 23  DEEKIKKEIEKYDQMMSEPDF-----------WSDQEKAKSISQKRKALQDKLNTYTSLK 71

Query: 264 ALFRDLCVAEKDLPESVVNSTL----QSNGYQKDYLDFSLEKFLK---ECYKNYFT-QSG 109
           +  +DL     +L E  +++TL    +    +KD   F LE +L    +    Y T Q+G
Sbjct: 72  SRIKDLDEMVSELKEEDLDTTLLISEELEAVEKDLKKFELETYLSDEMDINNAYLTIQAG 131

Query: 108 AAASECACD----LAHGFCTKASREGYSCQ 31
           A  +E ACD    L   +   A + GY  Q
Sbjct: 132 AGGTE-ACDWASMLLRMYTRWAEKHGYEVQ 160


>tr|Q5E057|Q5E057_VIBF1 Putative uncharacterized protein OS=Vibrio
           fischeri (strain ATCC 700601 / ES114) GN=VF_A0519 PE=4
           SV=1
          Length = 299

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
 Frame = -3

Query: 444 DPEICKREHAELDWLS---KEMAFQ------EFISSDRPTPWFDIDPARSEPYKDEHEAD 292
           D E  KRE  E +W +    E AFQ      E+        + D D  RSEPY  EH   
Sbjct: 147 DKEQAKREQEEKEWQAHQANEKAFQAALVIPEWAKGVIVATYTDYDKERSEPYSGEHHTK 206

Query: 291 -----IVSTFTAVAALFRDLCVAEKDLPESV-VNSTLQSNGYQKDY 172
                I+S  T    LF +L  A  + P++V +NS  QS  ++ +Y
Sbjct: 207 TLRTIILSWSTHTRRLFPELRKACLNNPDTVFLNSKEQSCEHRNNY 252


>tr|Q17Q32|Q17Q32_AEDAE Enolase-phosphatase e-1 OS=Aedes aegypti
           GN=AAEL000109 PE=4 SV=1
          Length = 1107

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = -3

Query: 312 KDEHEADIVSTFTAVAALFRDLCVAEKDLPESVVNSTLQSNGYQKDYLDFSLEKFLKECY 133
           +D  E  ++S+FT              DLP   V ST   NG +K+ +  S EK   E  
Sbjct: 240 EDRKEFTVISSFT--------------DLPIESVKSTETENGAEKETVTESTEKVADESE 285

Query: 132 KNYFTQSGAAASECACDLAHG 70
           K   T++ AA +E   +  +G
Sbjct: 286 KETETETAAAETENGAEAENG 306


>tr|B0EDS1|B0EDS1_ENTDI Furin repeat-containing protein, putative
            OS=Entamoeba dispar SAW760 GN=EDI_276450 PE=4 SV=1
          Length = 1110

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = -3

Query: 210  NSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASECACDLAHGFCTKASREG--YS 37
            N  L+ N    +YL+   E+ +  C + Y+T S  +   C+  +AH  CTK S EG   S
Sbjct: 1027 NECLKCNA---EYLEVKGEECV--CVEGYYTSSWGSCVPCSRHMAH--CTKCSGEGKCTS 1079

Query: 36   CQKS-RLEEG 10
            C++  +LEEG
Sbjct: 1080 CEEGWKLEEG 1089


>tr|A9E3N0|A9E3N0_ENTDI Intermediate subunit of galactose lectin 1
            OS=Entamoeba dispar GN=igl1 PE=2 SV=1
          Length = 1110

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = -3

Query: 210  NSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASECACDLAHGFCTKASREG--YS 37
            N  L+ N    +YL+   E+ +  C + Y+T S  +   C+  +AH  CTK S EG   S
Sbjct: 1027 NECLKCNA---EYLEVKGEECV--CVEGYYTSSWGSCVPCSRHMAH--CTKCSGEGKCTS 1079

Query: 36   CQKS-RLEEG 10
            C++  +LEEG
Sbjct: 1080 CEEGWKLEEG 1089


>tr|A9E3P3|A9E3P3_ENTDI Intermediate subunit of galactose lectin 1
            (Fragment) OS=Entamoeba dispar GN=igl1 PE=4 SV=1
          Length = 1087

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = -3

Query: 210  NSTLQSNGYQKDYLDFSLEKFLKECYKNYFTQSGAAASECACDLAHGFCTKASREG--YS 37
            N  L+ N    +YL+   E+ +  C + Y+T S  +   C+  +AH  CTK S EG   S
Sbjct: 1015 NECLKCNA---EYLEVKGEECV--CVEGYYTTSWGSCIPCSRHMAH--CTKCSGEGKCTS 1067

Query: 36   CQKS-RLEEG 10
            C++  +LEEG
Sbjct: 1068 CEEGWKLEEG 1077


>tr|A7JU94|A7JU94_PASHA Trk family potassium (K+) transporter, NAD+
           binding protein OS=Mannheimia haemolytica PHL213
           GN=MHA_1722 PE=4 SV=1
          Length = 458

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 381 QEFISSDRPTPWFDIDPARSEPYKDEHEADIVSTFTAVAALFRDLCVAEKDLPESVVNS 205
           +  +S D      D DP R +  KD+H+  ++    A     RD    + DL  +V NS
Sbjct: 17  ENLVSEDNDIVLVDNDPTRLDKLKDKHDLQVIRGEYASPQTLRDAGAGDADLLVAVTNS 75


>tr|B0EAY6|B0EAY6_ENTDI Furin repeat-containing protein, putative
            OS=Entamoeba dispar SAW760 GN=EDI_244250 PE=4 SV=1
          Length = 1106

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 138  CYKNYFTQSGAAASECACDLAHGFCTKASREG--YSCQKS-RLEEG 10
            C + Y+T S  +   C+  +AH  CTK S EG   SC++  +LEEG
Sbjct: 1042 CVEGYYTTSWGSCIPCSRHMAH--CTKCSGEGKCTSCEEGWKLEEG 1085


>tr|A9E3Q1|A9E3Q1_ENTDI Intermediate subunit of galactose lectin 2
            (Fragment) OS=Entamoeba dispar GN=igl2 PE=4 SV=1
          Length = 1083

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 138  CYKNYFTQSGAAASECACDLAHGFCTKASREG--YSCQKS-RLEEG 10
            C + Y+T S  +   C+  +AH  CTK S EG   SC++  +LEEG
Sbjct: 1030 CVEGYYTTSWGSCIPCSRHMAH--CTKCSGEGKCTSCEEGWKLEEG 1073


>tr|A9E3N7|A9E3N7_ENTDI Intermediate subunit of galactose lectin 2
            OS=Entamoeba dispar GN=igl2 PE=2 SV=1
          Length = 1106

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 138  CYKNYFTQSGAAASECACDLAHGFCTKASREG--YSCQKS-RLEEG 10
            C + Y+T S  +   C+  +AH  CTK S EG   SC++  +LEEG
Sbjct: 1042 CVEGYYTTSWGSCIPCSRHMAH--CTKCSGEGKCTSCEEGWKLEEG 1085