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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913213
Clone id YMU001_000027_G05
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGTTTTTTTTCTGTAGCTTGAGCCTTAGGAGCCATCTTAAATCTCAAGACTTCCAGAA
CTACCAATGGAAAGTCAGATGTGGTAAAATATGCTTTCCTTGGCCAAGCAAAACAGAAAC
ACAAGCAATGACACAGCTCTAAAATCCAAGCACAAAATCCAAGATACCTATTGCCCATCT
TATTTTCCATCCAAACTATTGCTCTGCACAGGTGACAGTAAACTAAATCCACGTTCTTAT
CATAAAAACATAATGTGCAGCAAAGAGAGCTCATGCAACATCTCTTGAATACATATTATT
GCAGAGAACCTTATCTCTCAAGTAGAACAGCCAGTAGTCACTATCCAGTGGCTTCAGCAG
GAACCTCGAGCTCCATTGCAGCTCTCTCGCGAATTCTTCTTTCCATCTCAGGCCTAAAAT
GTCGAATCAAGCCCTGCACTGGCCAAGCTGCAGCATCACCAAGAGCACAAATGGTGTGCC
CCTCAATCTGCTTCGTCAACTCCATAACATGTCT
■■Homology search results ■■ -
sp_hit_id Q1RHA0
Definition sp|Q1RHA0|NUOF_RICBR NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain RML369-C)
Align length 31
Score (bit) 62.4
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913213|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G05.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1RHA0|NUOF_RICBR NADH-quinone oxidoreductase subunit F OS=Ri...    62   1e-09
sp|A8GYE0|NUOF_RICB8 NADH-quinone oxidoreductase subunit F OS=Ri...    62   1e-09
sp|Q68XY3|NUOF_RICTY NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|A8F0M0|NUOF_RICM5 NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|Q4UKA6|NUOF_RICFE NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|A8GM77|NUOF_RICAH NADH-quinone oxidoreductase subunit F OS=Ri...    62   2e-09
sp|Q54I90|NDUV1_DICDI NADH dehydrogenase [ubiquinone] flavoprote...    62   2e-09
sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase subunit F 1 OS...    61   3e-09
sp|Q0MQI4|NDUV1_PONAB NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|Q0MQI6|NDUV1_PANTR NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|Q91YT0|NDUV1_MOUSE NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|Q8HXQ9|NDUV1_MACFA NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|Q0MQI5|NDUV1_GORGO NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|P25708|NDUV1_BOVIN NADH dehydrogenase [ubiquinone] flavoprote...    61   3e-09
sp|P24917|NDUV1_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subu...    61   4e-09
sp|Q92406|NDUV1_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subu...    61   4e-09
sp|A8GQT6|NUOF_RICRS NADH-quinone oxidoreductase subunit F OS=Ri...    60   5e-09
sp|A8EXI1|NUOF_RICCK NADH-quinone oxidoreductase subunit F OS=Ri...    60   5e-09
sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase subunit F OS=Rh...    60   5e-09
sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 OS=Para...    60   8e-09
sp|Q56222|NQO1_THET8 NADH-quinone oxidoreductase subunit 1 OS=Th...    39   0.011
sp|P65567|NUOF_MYCTU NADH-quinone oxidoreductase subunit F OS=My...    34   0.35 
sp|P65568|NUOF_MYCBO NADH-quinone oxidoreductase subunit F OS=My...    34   0.35 
sp|P56913|NUOF2_RHIME NADH-quinone oxidoreductase subunit F 2 OS...    32   1.3  
sp|Q96HY7|DHTK1_HUMAN Probable 2-oxoglutarate dehydrogenase E1 c...    32   1.3  
sp|Q5R7H0|DHTK1_PONAB Probable 2-oxoglutarate dehydrogenase E1 c...    30   5.1  
sp|Q8NHA4|O2AE1_HUMAN Olfactory receptor 2AE1 OS=Homo sapiens GN...    30   6.7  

>sp|Q1RHA0|NUOF_RICBR NADH-quinone oxidoreductase subunit F
           OS=Rickettsia bellii (strain RML369-C) GN=nuoF PE=3 SV=1
          Length = 417

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 25/31 (80%), Positives = 31/31 (100%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++E+TK+IEGHTICALGDAAAWP+QGLI+HF
Sbjct: 378 LLEVTKEIEGHTICALGDAAAWPIQGLIKHF 408


>sp|A8GYE0|NUOF_RICB8 NADH-quinone oxidoreductase subunit F
           OS=Rickettsia bellii (strain OSU 85-389) GN=nuoF PE=3
           SV=1
          Length = 417

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 25/31 (80%), Positives = 31/31 (100%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++E+TK+IEGHTICALGDAAAWP+QGLI+HF
Sbjct: 378 LLEVTKEIEGHTICALGDAAAWPIQGLIKHF 408


>sp|Q68XY3|NUOF_RICTY NADH-quinone oxidoreductase subunit F
           OS=Rickettsia typhi GN=nuoF PE=3 SV=1
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase subunit F
           OS=Rickettsia prowazekii GN=nuoF PE=3 SV=1
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|A8F0M0|NUOF_RICM5 NADH-quinone oxidoreductase subunit F
           OS=Rickettsia massiliae (strain Mtu5) GN=nuoF PE=3 SV=1
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|Q4UKA6|NUOF_RICFE NADH-quinone oxidoreductase subunit F
           OS=Rickettsia felis GN=nuoF PE=3 SV=1
          Length = 422

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase subunit F
           OS=Rickettsia conorii GN=nuoF PE=3 SV=1
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|A8GM77|NUOF_RICAH NADH-quinone oxidoreductase subunit F
           OS=Rickettsia akari (strain Hartford) GN=nuoF PE=3 SV=1
          Length = 423

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++ +TK+IEGHTICALGDAAAWP+QGLIRHF
Sbjct: 377 LLNVTKEIEGHTICALGDAAAWPIQGLIRHF 407


>sp|Q54I90|NDUV1_DICDI NADH dehydrogenase [ubiquinone] flavoprotein
           1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1
           PE=2 SV=1
          Length = 479

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 26/29 (89%), Positives = 29/29 (100%)
 Frame = -1

Query: 502 ELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           E+++QIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 431 EISRQIEGHTICALGDAAAWPVQGLIRHF 459


>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase subunit F 1
           OS=Rhizobium meliloti GN=nuoF1 PE=3 SV=1
          Length = 434

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 24/31 (77%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + ++TKQ+EGHTICALGDAAAWP+QGLI+HF
Sbjct: 378 LFDVTKQVEGHTICALGDAAAWPIQGLIKHF 408
tr_hit_id Q2YDP9
Definition tr|Q2YDP9|Q2YDP9_DANRE Zgc:123290 OS=Danio rerio
Align length 31
Score (bit) 65.9
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913213|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G05.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2YDP9|Q2YDP9_DANRE Zgc:123290 OS=Danio rerio GN=zgc:123290 P...    66   1e-09
tr|B1ZA41|B1ZA41_METPB NADH-quinone oxidoreductase, F subunit OS...    64   3e-09
tr|A9W1M8|A9W1M8_METEP NADH-quinone oxidoreductase, F subunit OS...    64   3e-09
tr|B7KQ61|B7KQ61_METCH NADH-quinone oxidoreductase, F subunit OS...    64   3e-09
tr|Q9FNN5|Q9FNN5_ARATH NADH dehydrogenase (At5g08530) OS=Arabido...    64   3e-09
tr|Q8LAL7|Q8LAL7_ARATH NADH dehydrogenase OS=Arabidopsis thalian...    64   3e-09
tr|Q8H2T7|Q8H2T7_ORYSJ Os07g0645400 protein OS=Oryza sativa subs...    64   3e-09
tr|Q6V9B2|Q6V9B2_CHLRE NADH:ubiquinone oxidoreductase 51 kD subu...    64   3e-09
tr|Q43840|Q43840_SOLTU NADH dehydrogenase OS=Solanum tuberosum P...    64   3e-09
tr|B7ZYZ3|B7ZYZ3_MAIZE Putative uncharacterized protein OS=Zea m...    64   3e-09
tr|B6T6U3|B6T6U3_MAIZE NADH-ubiquinone oxidoreductase 51 kDa sub...    64   3e-09
tr|A9TJV8|A9TJV8_PHYPA Predicted protein OS=Physcomitrella paten...    64   3e-09
tr|A9RJM8|A9RJM8_PHYPA Predicted protein OS=Physcomitrella paten...    64   3e-09
tr|A8ICJ1|A8ICJ1_CHLRE NADH:ubiquinone oxidoreductase 51 kDa sub...    64   3e-09
tr|A7PWR3|A7PWR3_VITVI Chromosome chr19 scaffold_35, whole genom...    64   3e-09
tr|A5C9C0|A5C9C0_VITVI Putative uncharacterized protein OS=Vitis...    64   3e-09
tr|A3BMS9|A3BMS9_ORYSJ Putative uncharacterized protein OS=Oryza...    64   3e-09
tr|A2YP98|A2YP98_ORYSI Putative uncharacterized protein OS=Oryza...    64   3e-09
tr|B1LUN2|B1LUN2_METRJ NADH-quinone oxidoreductase, F subunit OS...    64   4e-09
tr|B4FTE2|B4FTE2_MAIZE Putative uncharacterized protein OS=Zea m...    64   4e-09
tr|B4FQ98|B4FQ98_MAIZE NADH-ubiquinone oxidoreductase 51 kDa sub...    64   4e-09
tr|A4S734|A4S734_OSTLU Predicted protein (Fragment) OS=Ostreococ...    64   4e-09
tr|A9V0G1|A9V0G1_MONBE Predicted protein OS=Monosiga brevicollis...    64   4e-09
tr|B0ULK9|B0ULK9_METS4 NADH-quinone oxidoreductase, F subunit OS...    64   6e-09
tr|B8IUV1|B8IUV1_METNO NADH-quinone oxidoreductase, F subunit OS...    64   6e-09
tr|Q17880|Q17880_CAEEL Protein C09H10.3, partially confirmed by ...    64   6e-09
tr|B3GDA2|B3GDA2_9PELO Mitochondrial NADH dehydrogenase (Fragmen...    64   6e-09
tr|A8WT32|A8WT32_CAEBR CBR-NUO-1 protein OS=Caenorhabditis brigg...    64   6e-09
tr|Q163R0|Q163R0_ROSDO NADH-quinone oxidoreductase chain F OS=Ro...    63   8e-09
tr|Q11JK1|Q11JK1_MESSB NADH-quinone oxidoreductase, F subunit OS...    63   8e-09

>tr|Q2YDP9|Q2YDP9_DANRE Zgc:123290 OS=Danio rerio GN=zgc:123290 PE=2
           SV=1
          Length = 479

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + ELTKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 425 IWELTKQIEGHTICALGDAAAWPVQGLIRHF 455


>tr|B1ZA41|B1ZA41_METPB NADH-quinone oxidoreductase, F subunit
           OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
           13946 / BJ001) GN=Mpop_1014 PE=4 SV=1
          Length = 433

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 26/31 (83%), Positives = 31/31 (100%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++E+TKQ+EGHTICALGDAAAWP+QGLIRHF
Sbjct: 378 LLEVTKQVEGHTICALGDAAAWPIQGLIRHF 408


>tr|A9W1M8|A9W1M8_METEP NADH-quinone oxidoreductase, F subunit
           OS=Methylobacterium extorquens (strain PA1) GN=Mext_1080
           PE=4 SV=1
          Length = 433

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 26/31 (83%), Positives = 31/31 (100%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++E+TKQ+EGHTICALGDAAAWP+QGLIRHF
Sbjct: 378 LLEVTKQVEGHTICALGDAAAWPIQGLIRHF 408


>tr|B7KQ61|B7KQ61_METCH NADH-quinone oxidoreductase, F subunit
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_1209
           PE=4 SV=1
          Length = 433

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 26/31 (83%), Positives = 31/31 (100%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           ++E+TKQ+EGHTICALGDAAAWP+QGLIRHF
Sbjct: 378 LLEVTKQVEGHTICALGDAAAWPIQGLIRHF 408


>tr|Q9FNN5|Q9FNN5_ARATH NADH dehydrogenase (At5g08530)
           OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
          Length = 486

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 435 LQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>tr|Q8LAL7|Q8LAL7_ARATH NADH dehydrogenase OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 486

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 435 LQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>tr|Q8H2T7|Q8H2T7_ORYSJ Os07g0645400 protein OS=Oryza sativa subsp.
           japonica GN=P0503D09.102 PE=4 SV=1
          Length = 504

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 453 LQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>tr|Q6V9B2|Q6V9B2_CHLRE NADH:ubiquinone oxidoreductase 51 kD subunit
           OS=Chlamydomonas reinhardtii PE=2 SV=1
          Length = 484

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = -1

Query: 502 ELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 435 EITKQIEGHTICALGDAAAWPVQGLIRHF 463


>tr|Q43840|Q43840_SOLTU NADH dehydrogenase OS=Solanum tuberosum PE=2
           SV=1
          Length = 487

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 435 LQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>tr|B7ZYZ3|B7ZYZ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 504

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = -1

Query: 508 VMELTKQIEGHTICALGDAAAWPVQGLIRHF 416
           + E+TKQIEGHTICALGDAAAWPVQGLIRHF
Sbjct: 453 LQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483