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NBDC - LSDB Archive
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BP913214
Clone id YMU001_000027_G06
Library
Length 346
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGATGATACAGTCCATTCCCCTCCACCATGATGTACAAAGAAGTGGAGCCACCATTGTAC
CCATACTCAAGTCTTGGTCTAGAGCTAGGCGTGCTACCATCCAATCGTCAATCTCCGGTC
ATGGTCTTATAGGTCGCCTTATGGCAATGCTAATACAATGACTTGTGCAATGTTGTCAAC
GTGTTCTCCTAATATGCCTTGTTTGTAGCTTCACCGCCTTGAATTGAACATTGTAGTGTA
CTTCTGTGTGATTGAGAGTTCAGCATACTACATAGGCAACCCCTTGCATTGTACTATAGT
AGTGTACTTGTGTGTGATTGAGACTTCAGCTTACTACAAAGGCAAC
■■Homology search results ■■ -
sp_hit_id A1WE12
Definition sp|A1WE12|ENGA_VEREI GTP-binding protein engA OS=Verminephrobacter eiseniae (strain EF01-2)
Align length 26
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913214|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G06.
         (346 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1WE12|ENGA_VEREI GTP-binding protein engA OS=Verminephrobact...    30   2.9  
sp|Q1LLJ5|ENGA_RALME GTP-binding protein engA OS=Ralstonia metal...    30   2.9  
sp|A1K3Z3|ENGA_AZOSB GTP-binding protein engA OS=Azoarcus sp. (s...    30   2.9  
sp|Q46ZI7|ENGA_RALEJ GTP-binding protein engA OS=Ralstonia eutro...    30   3.7  
sp|Q9D6J5|NDUB8_MOUSE NADH dehydrogenase [ubiquinone] 1 beta sub...    30   4.8  
sp|Q8Y026|ENGA_RALSO GTP-binding protein engA OS=Ralstonia solan...    30   4.9  
sp|Q9XYN0|INX1_SCHAM Innexin inx1 OS=Schistocerca americana GN=i...    29   6.3  
sp|A5CVZ6|FOLD_VESOH Bifunctional protein folD OS=Vesicomyosociu...    29   6.3  
sp|A2SHB1|ENGA_METPP GTP-binding protein engA OS=Methylibium pet...    29   6.4  
sp|Q21W32|ENGA_RHOFD GTP-binding protein engA OS=Rhodoferax ferr...    29   8.3  

>sp|A1WE12|ENGA_VEREI GTP-binding protein engA OS=Verminephrobacter
           eiseniae (strain EF01-2) GN=engA PE=3 SV=1
          Length = 468

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 80  RPRLEYGYNGGSTSLYIMVEGNGLYH 3
           RP++ Y + GG     I++ GNGL H
Sbjct: 400 RPKMRYAHQGGMNPPVIVIHGNGLEH 425


>sp|Q1LLJ5|ENGA_RALME GTP-binding protein engA OS=Ralstonia
           metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
           GN=engA PE=3 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 83  SRPRLEYGYNGGSTSLYIMVEGNGL 9
           SRP+L Y + GGS    I+V GN L
Sbjct: 381 SRPKLRYAHQGGSNPPIIVVHGNAL 405


>sp|A1K3Z3|ENGA_AZOSB GTP-binding protein engA OS=Azoarcus sp.
           (strain BH72) GN=engA PE=3 SV=1
          Length = 442

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 86  SSRPRLEYGYNGGSTSLYIMVEGNGLYH 3
           S+RP+L Y + GG     I++ GN L H
Sbjct: 376 SARPKLRYAHQGGMNPPVIVIHGNALDH 403


>sp|Q46ZI7|ENGA_RALEJ GTP-binding protein engA OS=Ralstonia eutropha
           (strain JMP134) GN=engA PE=3 SV=1
          Length = 447

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 83  SRPRLEYGYNGGSTSLYIMVEGNGL 9
           SRP+L Y + GGS    I++ GN L
Sbjct: 381 SRPKLRYAHQGGSNPPIIVIHGNAL 405


>sp|Q9D6J5|NDUB8_MOUSE NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 8, mitochondrial OS=Mus musculus
           GN=Ndufb8 PE=1 SV=1
          Length = 186

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  FPSTMMYKEVEPPLYPYSSLGLELGVLPSNRQSPVM 123
           FPS   Y+ V P  YPY++L LE G  P+    PV+
Sbjct: 150 FPS---YQPVGPKQYPYNNLYLERGGDPTKEPEPVV 182


>sp|Q8Y026|ENGA_RALSO GTP-binding protein engA OS=Ralstonia
           solanacearum GN=engA PE=3 SV=1
          Length = 447

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 83  SRPRLEYGYNGGSTSLYIMVEGNGL 9
           SRP+L Y + GGS    +++ GN L
Sbjct: 381 SRPKLRYAHQGGSNPPIVVIHGNAL 405


>sp|Q9XYN0|INX1_SCHAM Innexin inx1 OS=Schistocerca americana GN=inx1
           PE=1 SV=1
          Length = 361

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 209 LHRLELNIVVYFC-VIESSAYYIGNPLHCTI 298
           LH L   +++  C +I ++  Y+GNP+HC +
Sbjct: 26  LHNLFTTVLLLTCSLIITATQYVGNPIHCIV 56


>sp|A5CVZ6|FOLD_VESOH Bifunctional protein folD OS=Vesicomyosocius
           okutanii subsp. Calyptogena okutanii (strain HA) GN=folD
           PE=3 SV=1
          Length = 277

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 173 LSTCSPNMPCL*LHRLELNIVVYFCVIESSAYYIGNPLHCTIV 301
           L  C+P    L L  +E+++V   CV+  ++  +G P+ C ++
Sbjct: 132 LHPCTPKGVMLMLESIEIDLVGKNCVVVGASNIVGRPMACELL 174


>sp|A2SHB1|ENGA_METPP GTP-binding protein engA OS=Methylibium
           petroleiphilum (strain PM1) GN=engA PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 80  RPRLEYGYNGGSTSLYIMVEGNGLYH 3
           RP+L Y + GG     I++ GN L H
Sbjct: 381 RPKLRYAHQGGQNPPVIVIHGNSLEH 406


>sp|Q21W32|ENGA_RHOFD GTP-binding protein engA OS=Rhodoferax
           ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
           GN=engA PE=3 SV=1
          Length = 447

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 80  RPRLEYGYNGGSTSLYIMVEGNGLYH 3
           RP+L Y + GG     I++ GN L H
Sbjct: 381 RPKLRYAHQGGMNPPVIIIHGNSLEH 406
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913214|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G06.
         (346 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******