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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913217
Clone id YMU001_000027_G09
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAAAGAAAATGATAATTTGAGGAAATCGCTTTATCGAAGAGTCATGGGGATTGTAATTCT
CAACCCTGGCATCTCAGAGGGATCTATTACTGAGCAAATAGACGTGCTGAATCCAACTAG
CTGTCAAAAGCTGCTTGAATTGATGATACTGGATGGCCATCTGTATGTTCAGACGAGAGC
AGTATACAACATGCCATCGATGCCTAGACTTCTTCAAGGAGCCTCTCTGCAAAAAAGAAA
ATGTATCACAAGAAAGTACTATTATGCTAACTCAGCAAGCAGCTCTTTGCTGTGATGTTG
TTTTGTGATAAACCCTGTAACCAGGCTGTAAAGCTGGCAGTGGCTTTGGAAAAATGGTCA
AAAGTGGCAGTAAAATGTCTATCAAAGTAGCAAATCTTGCACATGCACGAGAATACCGTC
TCATTTTGAGAAGCTAGGGAGGTTTAATGTCCTCTTTCAGGGTTAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id Q1LTZ4
Definition sp|Q1LTZ4|SUCC_BAUCH Succinyl-CoA ligase [ADP-forming] subunit beta OS=Baumannia cicadellinicola subsp. Homalodisca coagulata
Align length 48
Score (bit) 32.3
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913217|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G09.
         (464 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1LTZ4|SUCC_BAUCH Succinyl-CoA ligase [ADP-forming] subunit b...    32   1.0  
sp|P43089|HEM1_PARDP 5-aminolevulinate synthase OS=Paracoccus de...    31   2.3  
sp|Q4FVH9|SUCC_PSYA2 Succinyl-CoA ligase [ADP-forming] subunit b...    30   3.9  
sp|O35975|NAR2B_MOUSE T-cell ecto-ADP-ribosyltransferase 2 OS=Mu...    30   5.1  
sp|Q6IR41|C1QT6_MOUSE Complement C1q tumor necrosis factor-relat...    30   5.1  
sp|Q1QEK5|SUCC_PSYCK Succinyl-CoA ligase [ADP-forming] subunit b...    30   6.7  

>sp|Q1LTZ4|SUCC_BAUCH Succinyl-CoA ligase [ADP-forming] subunit beta
           OS=Baumannia cicadellinicola subsp. Homalodisca
           coagulata GN=sucC PE=3 SV=1
          Length = 393

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +2

Query: 107 LNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPRLLQGASLQKRKCIT 250
           +NP    +L +L+ LDG L+V + A++  P + ++L  +  Q+ KC T
Sbjct: 199 INPLVITRLGDLICLDGKLHVDSNALFRQPELCKMLDPS--QEDKCET 244


>sp|P43089|HEM1_PARDP 5-aminolevulinate synthase OS=Paracoccus
           denitrificans (strain Pd 1222) GN=hemA PE=3 SV=2
          Length = 409

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 65  PGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
           P +  GS    + V NP  C+ L ++++ D  +YVQ     N P++PR
Sbjct: 324 PIMDHGSHIVPVHVGNPVHCKALSDMLLADFGIYVQP---INFPTVPR 368


>sp|Q4FVH9|SUCC_PSYA2 Succinyl-CoA ligase [ADP-forming] subunit beta
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=sucC PE=3 SV=1
          Length = 388

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 35  RRVMGIVILNPGISEGSITEQIDVL--NPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
           +++   V L  G  +  +   ID+L  NP + ++  E++ +DG + + + A+Y +P +  
Sbjct: 173 KQISQFVKLMTGAYQAFVENDIDLLEINPLAVRENGEIVCVDGKISIDSNALYRLPKIAA 232

Query: 209 LLQGASLQKRK 241
           L   +   +R+
Sbjct: 233 LQDKSQENERE 243


>sp|O35975|NAR2B_MOUSE T-cell ecto-ADP-ribosyltransferase 2 OS=Mus
           musculus GN=Art2b PE=2 SV=1
          Length = 289

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 352 FPKPLPALQPGYRVYHKTTSQ 290
           FP+    L PGY VYHK T+Q
Sbjct: 204 FPREEEVLIPGYEVYHKVTAQ 224


>sp|Q6IR41|C1QT6_MOUSE Complement C1q tumor necrosis factor-related
           protein 6 OS=Mus musculus GN=C1qtnf6 PE=2 SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -1

Query: 386 FDRHFTATFDHFSKATASFTAWLQGL 309
           FDR F  T  HF  AT SF A L+GL
Sbjct: 151 FDRVFVNTDGHFDMATGSFVAPLRGL 176


>sp|Q1QEK5|SUCC_PSYCK Succinyl-CoA ligase [ADP-forming] subunit beta
           OS=Psychrobacter cryohalolentis (strain K5) GN=sucC PE=3
           SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 35  RRVMGIVILNPGISEGSITEQIDVL--NPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
           +++   V L  G  +  +   ID+L  NP + ++  E++ +DG + + + A+Y +P +  
Sbjct: 173 KQINQFVKLMSGAYQAFVENDIDLLEINPLAVRENGEIVCVDGKIGIDSNALYRLPKIAA 232

Query: 209 LLQGASLQKRK 241
           L   +   +R+
Sbjct: 233 LQDKSQENERE 243
tr_hit_id Q94HW6
Definition tr|Q94HW6|Q94HW6_ARATH Putative uncharacterized protein T4M14.2 OS=Arabidopsis thaliana
Align length 79
Score (bit) 67.4
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913217|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_G09.
         (464 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94HW6|Q94HW6_ARATH Putative uncharacterized protein T4M14.2 ...    67   3e-10
tr|Q94HW1|Q94HW1_ARATH Putative uncharacterized protein T4M14.16...    67   3e-10
tr|B5BRE2|B5BRE2_ARATH Transcription factor OS=Arabidopsis thali...    66   7e-10
tr|B5BRE0|B5BRE0_ARATH Transcription factor (Fragment) OS=Arabid...    66   7e-10
tr|Q8LPQ0|Q8LPQ0_ARATH At1g17450/F1L3.20 OS=Arabidopsis thaliana...    64   5e-09
tr|A9RJW6|A9RJW6_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|Q6H7J8|Q6H7J8_ORYSJ Os02g0633100 protein OS=Oryza sativa subs...    56   8e-07
tr|B8AFS4|B8AFS4_ORYSI Putative uncharacterized protein OS=Oryza...    56   8e-07
tr|A3A9B8|A3A9B8_ORYSJ Putative uncharacterized protein OS=Oryza...    56   8e-07
tr|A3A634|A3A634_ORYSJ Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A3B6Z4|A3B6Z4_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|B8AWT6|B8AWT6_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|B8AG94|B8AG94_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|Q9LQJ8|Q9LQJ8_ARATH F28G4.7 protein OS=Arabidopsis thaliana G...    45   0.002
tr|Q9LNR0|Q9LNR0_ARATH F1L3.14 OS=Arabidopsis thaliana PE=4 SV=1       45   0.002
tr|O24947|O24947_HELPY 3-deoxy-D-arabino-heptulosonate 7-phospha...    33   7.0  
tr|A8Y5K6|A8Y5K6_MOUSE Eukaryotic translation initiation factor ...    33   9.1  
tr|B0CR00|B0CR00_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.1  

>tr|Q94HW6|Q94HW6_ARATH Putative uncharacterized protein T4M14.2
           OS=Arabidopsis thaliana GN=At1g58766 PE=4 SV=1
          Length = 665

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29  LYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
           L RRV+G V+ NPGI E  I  Q+DVLNP SC+KLLELM LDG++ V+          P 
Sbjct: 575 LVRRVLGTVMQNPGIPEEEIINQMDVLNPQSCRKLLELMTLDGYMKVREMVQTKFSGPPS 634

Query: 209 LLQG---ASLQKRKCITRK 256
           LL G      +K + I+RK
Sbjct: 635 LLTGLLFTGHRKTELISRK 653


>tr|Q94HW1|Q94HW1_ARATH Putative uncharacterized protein T4M14.16
            OS=Arabidopsis thaliana GN=At1g59453 PE=4 SV=1
          Length = 1729

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29   LYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
            L RRV+G V+ NPGI E  I  Q+DVLNP SC+KLLELM LDG++ V+          P 
Sbjct: 1639 LVRRVLGTVMQNPGIPEEEIINQMDVLNPQSCRKLLELMTLDGYMKVREMVQTKFSGPPS 1698

Query: 209  LLQG---ASLQKRKCITRK 256
            LL G      +K + I+RK
Sbjct: 1699 LLTGLLFTGHRKTELISRK 1717


>tr|B5BRE2|B5BRE2_ARATH Transcription factor OS=Arabidopsis thaliana
            GN=At1g59453 orthologue PE=4 SV=1
          Length = 1695

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29   LYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
            L RRV+G V+ NPGI E  I  Q+DVLNP SC+KLLELM LDG++ ++          P 
Sbjct: 1605 LVRRVLGTVMQNPGIPEEEIINQMDVLNPQSCRKLLELMTLDGYMKLREMVQTKFSGPPS 1664

Query: 209  LLQG---ASLQKRKCITRK 256
            LL G      +K + I+RK
Sbjct: 1665 LLTGLLFTGHRKTELISRK 1683


>tr|B5BRE0|B5BRE0_ARATH Transcription factor (Fragment) OS=Arabidopsis
            thaliana GN=At1g69453 orthologue PE=4 SV=1
          Length = 980

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 29   LYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
            L RRV+G V+ NPGI E  I  Q+DVLNP SC+KLLELM LDG++ ++          P 
Sbjct: 890  LVRRVLGTVMQNPGIPEEEIINQMDVLNPQSCRKLLELMTLDGYMKLREMVQTKFSGPPS 949

Query: 209  LLQG---ASLQKRKCITRK 256
            LL G      +K + I+RK
Sbjct: 950  LLTGLLFTGHRKTELISRK 968


>tr|Q8LPQ0|Q8LPQ0_ARATH At1g17450/F1L3.20 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 609

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 32/64 (50%), Positives = 40/64 (62%)
 Frame = +2

Query: 29  LYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVYNMPSMPR 208
           L RRV+G V+ NPGI E  I   +D+LNP SC+KLLELM LDG++ V+          P 
Sbjct: 519 LVRRVLGTVMQNPGIPEDEIINLMDILNPQSCRKLLELMTLDGYMKVREMVQTKFTGPPS 578

Query: 209 LLQG 220
           LL G
Sbjct: 579 LLAG 582


>tr|A9RJW6|A9RJW6_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_67112 PE=4 SV=1
          Length = 2021

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 31/69 (44%), Positives = 46/69 (66%)
 Frame = +2

Query: 8    NDNLRKSLYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVY 187
            N  L KSL RRV+GIV+LNPGI E  + +Q+ VLNP + ++LL+++  DGH+ V+     
Sbjct: 1923 NRLLLKSLLRRVIGIVMLNPGILEEHLVDQLHVLNPQTAKELLQMLEYDGHVIVKKLLRS 1982

Query: 188  NMPSMPRLL 214
              P+ P +L
Sbjct: 1983 QPPTPPGVL 1991


>tr|Q6H7J8|Q6H7J8_ORYSJ Os02g0633100 protein OS=Oryza sativa subsp.
            japonica GN=OJ1643_A10.15-1 PE=4 SV=1
          Length = 1820

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +2

Query: 8    NDNLRKSLYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVY 187
            N+ + + L RR++G  +  PG+ E  I  ++DVLNP +C+ LLE ++ D HLY +     
Sbjct: 1724 NNTVYEGLSRRIIGYTMQYPGVVEEDIIHRMDVLNPQTCRTLLEKLMFDKHLYARV-FDE 1782

Query: 188  NMPSMPRLLQGASLQKR 238
              PS P LLQ    Q R
Sbjct: 1783 RAPSAPTLLQSILKQDR 1799


>tr|B8AFS4|B8AFS4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_08179 PE=4 SV=1
          Length = 1811

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +2

Query: 8    NDNLRKSLYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVY 187
            N+ + + L RR++G  +  PG+ E  I  ++DVLNP +C+ LLE ++ D HLY +     
Sbjct: 1715 NNTVYEGLSRRIIGYTMQYPGVVEEDIIHRMDVLNPQTCRTLLEKLMFDKHLYARV-FDE 1773

Query: 188  NMPSMPRLLQGASLQKR 238
              PS P LLQ    Q R
Sbjct: 1774 RAPSAPTLLQSILKQDR 1790


>tr|A3A9B8|A3A9B8_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_007390 PE=4 SV=1
          Length = 1627

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +2

Query: 8    NDNLRKSLYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVY 187
            N+ + + L RR++G  +  PG+ E  I  ++DVLNP +C+ LLE ++ D HLY +     
Sbjct: 1531 NNTVYEGLSRRIIGYTMQYPGVVEEDIIHRMDVLNPQTCRTLLEKLMFDKHLYARV-FDE 1589

Query: 188  NMPSMPRLLQGASLQKR 238
              PS P LLQ    Q R
Sbjct: 1590 RAPSAPTLLQSILKQDR 1606


>tr|A3A634|A3A634_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006256 PE=4 SV=1
          Length = 464

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
 Frame = +2

Query: 8   NDNLRKSLYRRVMGIVILNPGISEGSITEQIDVLNPTSCQKLLELMILDGHLYVQTRAVY 187
           N  + + L  R++G V+  PGI E  +   +DVLNP +C+ LL  + +D HLYV+   V+
Sbjct: 313 NSTVYECLSHRIIGYVMQYPGIMEEDVINWLDVLNPQTCRTLLGKLTIDKHLYVR---VF 369

Query: 188 N--MPSMPRLL-----QGASLQKRKC 244
           +  +P+ P  L     QG + +  KC
Sbjct: 370 DEPVPTAPTTLQNILRQGHNREPSKC 395