NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913223
Clone id YMU001_000027_H03
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTGGCAATGCCTGTCCTCACCAAACGCTGATGGCAGATAGGAGAATCCAGCATCAAGTC
AAAACATTGTGTATTTTGCTGCCGCTTGCATAGCATTACCAGCACTTGCAATCTTAGGGG
TCCTCTTGTAGGATGTACTATCCAATCCTCGTTTATACTAAATGCAAAAATCAGTCCAGC
ATATCCATTCATATATGCTCCTTTATGTTACAAAGATTGTTCTGAGCTGGTTATATTTAC
TGGAACTATAATACCACTGTTTCCTTCAAATCCAAACCCATGCTTTCGATTTGAAGCTCA
GTACAATAAGGCTGATTTCTCTAATGCTTAGAAAATTAGCCAGCACAACCAAAACAATCA
AGACTGTAAGCATCGATCAAGTAAAATCTGCATGTACAAACCTATCTTTACTCAACCCTA
AAACCATTTCTGCAGTTACTCCCTTGAAAGCCTTTACACAAGCTTCTTCTTTTCGCATAC
CTGCGACAATCACAGTTTCTGAACATGCAAGCAAAGTTCTTCGCAGTTCTGTCTC
■■Homology search results ■■ -
sp_hit_id Q6FX50
Definition sp|Q6FX50|SET2_CANGA Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Candida glabrata
Align length 72
Score (bit) 30.4
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913223|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_H03.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FX50|SET2_CANGA Histone-lysine N-methyltransferase, H3 lysi...    30   5.6  
sp|Q02203|YKY5_YEAST Uncharacterized protein YKR005C OS=Saccharo...    30   9.5  
sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit ...    30   9.5  
sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit ...    30   9.5  

>sp|Q6FX50|SET2_CANGA Histone-lysine N-methyltransferase, H3
           lysine-36 specific OS=Candida glabrata GN=SET2 PE=3 SV=1
          Length = 716

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 252 YHCFLQIQTHAFDLKLSTIRLISLMLRKLASTTKT-IKTVSID-QVKSACTNLSLLNPKT 425
           Y CF ++    F L+   ++ I   L +L  TTK  I +  ID QVKS C N S L+   
Sbjct: 386 YTCFTKL-LQLFALEEDELKKILYFLERLPKTTKNGIISSHIDFQVKSVCKNHSSLSSIG 444

Query: 426 ISAVTPLKAFTQ 461
            S +   KA+ +
Sbjct: 445 DSLIEKWKAYEE 456


>sp|Q02203|YKY5_YEAST Uncharacterized protein YKR005C
           OS=Saccharomyces cerevisiae GN=YKR005C PE=2 SV=1
          Length = 447

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 291 LKLSTIRLISLMLRKLASTTKTIKTVSIDQVKSACTNLSLLNPKTISAVT 440
           L+    +LIS +L  L +  KTI +V + +V  A   +  L  +TIS  T
Sbjct: 82  LQFEKNQLISALLTSLTNNQKTISSVDMFEVVDANNEVQYLRERTISGKT 131


>sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit 3
           OS=Mus musculus GN=Cog3 PE=1 SV=3
          Length = 820

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 288 DLKLSTIRLISLMLRKLAS--TTKTIKTVSIDQVKSACTNLSLLNPKTISAVTPLKAFTQ 461
           D +L  I+ + ++  ++A   T  TIK +S+D  K+      +LNP T+     L +   
Sbjct: 599 DGQLFLIKHLLILREQIAPFHTEFTIKEISLDLKKTRDAAFKILNPMTVPRFFRLNSNNA 658

Query: 462 ASSFRIPATITVSEH 506
              F +  T  + EH
Sbjct: 659 LIEFLLEGTPEIREH 673


>sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3
           OS=Homo sapiens GN=COG3 PE=1 SV=3
          Length = 828

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 288 DLKLSTIRLISLMLRKLAS--TTKTIKTVSIDQVKSACTNLSLLNPKTISAVTPLKAFTQ 461
           D +L  I+ + ++  ++A   T  TIK +S+D  K+      +LNP T+     L +   
Sbjct: 607 DGQLFLIKHLLILREQIAPFHTEFTIKEISLDLKKTRDAAFKILNPMTVPRFFRLNSNNA 666

Query: 462 ASSFRIPATITVSEH 506
              F +  T  + EH
Sbjct: 667 LIEFLLEGTPEIREH 681
tr_hit_id A3FFI6
Definition tr|A3FFI6|A3FFI6_RHORS NADH-ubiquinone oxidoreductase chain 2 (Fragment) OS=Rhodostethia rosea
Align length 78
Score (bit) 34.3
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913223|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_H03.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3FFI6|A3FFI6_RHORS NADH-ubiquinone oxidoreductase chain 2 (F...    34   4.1  
tr|Q7RYU2|Q7RYU2_NEUCR Eukaryotic translation initiation factor ...    34   4.2  
tr|A4RM03|A4RM03_MAGGR Putative uncharacterized protein OS=Magna...    34   4.2  
tr|Q13PX2|Q13PX2_BURXL Putative uncharacterized protein OS=Burkh...    34   5.4  
tr|B2AW47|B2AW47_PODAN Predicted CDS Pa_7_5930 OS=Podospora anse...    33   9.3  

>tr|A3FFI6|A3FFI6_RHORS NADH-ubiquinone oxidoreductase chain 2
           (Fragment) OS=Rhodostethia rosea GN=ND2 PE=3 SV=1
          Length = 328

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 24/78 (30%), Positives = 35/78 (44%)
 Frame = +3

Query: 270 IQTHAFDLKLSTIRLISLMLRKLASTTKTIKTVSIDQVKSACTNLSLLNPKTISAVTPLK 449
           I T+   L L T  L SLM   +  T  TIK V +  +  + T   +LN   + A+ PL 
Sbjct: 178 IITYTPKLTLLTFYLYSLMTTTVFLTLNTIKAVKLSTMMISWTKTPMLNATLLLALFPLA 237

Query: 450 AFTQASSFRIPATITVSE 503
            F   + F  P  + + E
Sbjct: 238 GFPPLTGF-FPKWLIIQE 254


>tr|Q7RYU2|Q7RYU2_NEUCR Eukaryotic translation initiation factor 5
           OS=Neurospora crassa GN=NCU00366 PE=4 SV=2
          Length = 389

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
 Frame = -2

Query: 267 EGNSGIIVPVNITSSEQSL*HKGAYMNGYAGLIFAFSINED-----WIVHPTRGPLRLQV 103
           +GN    V VN++S  QSL   G Y+  Y G       N D     WI++ +    +LQ 
Sbjct: 30  KGNGIKTVVVNLSSVAQSLARPGGYLIKYFGFELGAQTNIDPPDDRWIINGSHEAAKLQD 89

Query: 102 LV-------MLCKRQQNTQCF------DLMLDSPICHQR 25
           L+       +LCK+ +N +         + LD   C QR
Sbjct: 90  LLDGFIAKFVLCKKCKNPETVVQIKDEKITLDCKACGQR 128


>tr|A4RM03|A4RM03_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_08866 PE=4 SV=1
          Length = 430

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
 Frame = -2

Query: 267 EGNSGIIVPVNITSSEQSL*HKGAYMNGYAGLIFAFSINED-----WIVHPTRGPLRLQV 103
           +GN    V VN+TS  QSL   GAY+  Y G       N D     WI++      +LQ 
Sbjct: 29  KGNGIKTVVVNLTSVAQSLARPGAYLIKYFGFELGAQTNIDPADDRWIINGAHDAAKLQD 88

Query: 102 LV-------MLCKRQQNTQCFDLMLDSPI 37
            +       +LCK+ +N +   ++ D  I
Sbjct: 89  YLDGFINKFVLCKKCKNPETDVIIKDGNI 117


>tr|Q13PX2|Q13PX2_BURXL Putative uncharacterized protein
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_B0899
           PE=4 SV=1
          Length = 349

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +3

Query: 330 RKLASTTKTIKTVSIDQVKSACTNLSL-------LNPKTISAVTPLKAFTQASSFRIPAT 488
           R++ ST ++  TVS DQV+ A  NL+L       L P       P + F QA + +  AT
Sbjct: 108 RRVLSTQRSTATVSADQVQRAKANLALAERTVERLGPLASKGYVPAQQFDQAQTAKHDAT 167

Query: 489 ITVSE 503
            ++ +
Sbjct: 168 TSLQQ 172


>tr|B2AW47|B2AW47_PODAN Predicted CDS Pa_7_5930 OS=Podospora
           anserina PE=4 SV=1
          Length = 418

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
 Frame = -2

Query: 267 EGNSGIIVPVNITSSEQSL*HKGAYMNGYAGLIFAFSINED-----WIVHPTRGPLRLQV 103
           +GN    V VN++S  QSL   G+Y+  Y G       N D     WI++      +LQ 
Sbjct: 30  KGNGIKTVVVNLSSVAQSLARPGSYLIKYFGFELGAQTNIDPADDRWIINGAHEANKLQE 89

Query: 102 LV-------MLCKRQQNTQC------FDLMLDSPICHQR 25
           L+       +LCK+ +N +         + LD   C QR
Sbjct: 90  LLDGFISKFVLCKKCKNPETDVHIKDGHITLDCKACGQR 128