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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913235
Clone id YMU001_000028_A05
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTGTATTTTTTGATGAATTCCTCATCAACTAAAAAACCACACCCC
ACACCTTTGCTTCTAGTGAATTCCTCATCAACTAAAAAACCACACCCCACTCTTTTGCTT
TCCAGCTATAATAACAGCCCAGCTCAGTGTCTTAGCACCTTAAAATGACAAAACTATGAT
GTCACAAGGCCAATTCCTGTTTCAGGATTGCCCCAACCTAGACATTTGATCAAAATGACA
CAATATTCTGTCCTCTTTACTATGGGAGTGACCGAGGAACAACTTCTGAAGCACTCTCTA
TTGCAAAAACAACAACTTTACTTCCAAGTTGTTATAGTATGTTTCATTTTTGAAGAATTT
CGCTGCGAGAGGAAGTATCAATCTAGAAAGATCGCCTATCGCTGATTTTTCCTTGCGTAA
GACCCATTCTGGTGGTTGTAGATGACATTGGCAGGAGACCTTGCATCTGCACTTACATCG
CTTTAGTCTTTGTCTGGAACCTTGACAATAGTTTGTTCACTCTACAGGAAGCCTGTACTA
GTCCACATTGAAGTAAATA
■■Homology search results ■■ -
sp_hit_id Q54XH9
Definition sp|Q54XH9|Y8921_DICDI Putative uncharacterized protein DDB_G0278921 OS=Dictyostelium discoideum
Align length 44
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913235|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_A05.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54XH9|Y8921_DICDI Putative uncharacterized protein DDB_G0278...    31   3.3  
sp|Q874W3|SDS23_PODAN Protein SDS23 OS=Podospora anserina GN=SDS...    30   9.5  

>sp|Q54XH9|Y8921_DICDI Putative uncharacterized protein DDB_G0278921
           OS=Dictyostelium discoideum GN=DDB_G0278921 PE=4 SV=1
          Length = 921

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 5   NSSSTKKPHPTPLLLVNSSSTKKPHPTLLLSSYNNSPAQCLSTL 136
           NS+    P+P   L +NS+S   P+P L  +SY+NS +   S L
Sbjct: 672 NSNPNSNPNPKSNLNLNSNSNSNPNPNL--NSYSNSHSNSNSNL 713


>sp|Q874W3|SDS23_PODAN Protein SDS23 OS=Podospora anserina GN=SDS23
           PE=3 SV=1
          Length = 513

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 26  PHPTPLLLVNSSSTKKPHPTLLLSSYNNSPAQCLSTLK*QNYDVTRPIPVSGLP 187
           P PT +  V SSS+  P PT+L+SS   S  Q  S L  Q++     +P + LP
Sbjct: 403 PPPTSVTGVGSSSSPGPQPTVLVSSQTPSAPQ--SPLPGQSFP---SVPSASLP 451
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913235|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_A05.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******