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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913236
Clone id YMU001_000028_A06
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTACACTGGCTCTAAAAAGCTCCACATCATCACTACCTTTCTCTCAGAAGGCAGTGCC
AACAAAGAATATGTATACATGCTATCTGGATTAGACGATTTTACAATATATATTATCCTT
GTCTACTCGATTATGTGTATTGACTTCACTAGCTTGTTTGCCAATCAACAGTCCGCCATC
AAATCTTGGTCACCTGATTTGTCAAATTCACTACTCGAATCTACTTTCATGCTTCGGCTC
ATGCCTTCTTCAATTTTCTTCTGTTCTTCCAATTTCTTCTTCTGAATCCAGTTAGATAGA
ACAGGCATACCAGCGAGACCCAAGACAGCCTTGTGCGCTTGTGACATCGCCTGCCTTGTA
GTTTCAGCTGCATTAGCTACTACCGGCCTAACGGCCTCCACAGGCACGCTTGCATGCTCC
TGCAGTATTGACAATGTCTGAGACGCAGCCGCTGATCCCATTCTCCGGATTCCCACCTCA
GCTGCACGTACAGCTCGAGCAGAACTCCTTACACTTTCAGAAATCTCCTGGCTCAAATCG
CTCAACTCCAGCGTGAGATCACTGATCTCCATCCCAGATAGC
■■Homology search results ■■ -
sp_hit_id P36555
Definition sp|P36555|YJDB_SALTY UPF0141 membrane protein yjdB OS=Salmonella typhimurium
Align length 50
Score (bit) 30.4
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913236|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_A06.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36555|YJDB_SALTY UPF0141 membrane protein yjdB OS=Salmonella...    30   6.7  
sp|P30845|YJDB_ECOLI UPF0141 membrane protein yjdB OS=Escherichi...    30   6.7  

>sp|P36555|YJDB_SALTY UPF0141 membrane protein yjdB OS=Salmonella
           typhimurium GN=yjdB PE=3 SV=1
          Length = 547

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +1

Query: 73  VYMLSGLDDFTIYIILVYSIMCIDFTSLFANQQSAIKSWSPDLSNSLLES 222
           +Y L+ +    + +ILV +    D+ SLF N +  IK+ SP  SNS++ S
Sbjct: 155 LYRLASVLISILLVILVAAFFYKDYASLFRNNKQLIKALSP--SNSIVAS 202


>sp|P30845|YJDB_ECOLI UPF0141 membrane protein yjdB OS=Escherichia
           coli (strain K12) GN=yjdB PE=1 SV=2
          Length = 547

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 106 IYIILVYSIMCIDFTSLFANQQSAIKSWSPDLSNSLLES 222
           + I+LV ++   D+ SLF N +  +KS SP  SNS++ S
Sbjct: 166 LLILLVAALFYKDYASLFRNNKELVKSLSP--SNSIVAS 202
tr_hit_id A9NYG4
Definition tr|A9NYG4|A9NYG4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 97
Score (bit) 83.2
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913236|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_A06.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NYG4|A9NYG4_PICSI Putative uncharacterized protein OS=Picea...    83   1e-14
tr|A7QW11|A7QW11_VITVI Chromosome undetermined scaffold_197, who...    81   4e-14
tr|Q9SJE0|Q9SJE0_ARATH T27G7.21 OS=Arabidopsis thaliana PE=4 SV=1      76   1e-12
tr|Q9FRS9|Q9FRS9_ARATH F22O13.1 (Putative uncharacterized protei...    76   1e-12
tr|Q0WNC2|Q0WNC2_ARATH Putative uncharacterized protein At1g0853...    76   1e-12
tr|B7FJD7|B7FJD7_MEDTR Putative uncharacterized protein OS=Medic...    74   8e-12
tr|A9TA14|A9TA14_PHYPA Predicted protein OS=Physcomitrella paten...    61   5e-08
tr|A9NZB4|A9NZB4_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|Q2QSG0|Q2QSG0_ORYSJ Expressed protein (Putative uncharacteriz...    48   5e-04
tr|B8BPD1|B8BPD1_ORYSI Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|A5BRB5|A5BRB5_VITVI Putative uncharacterized protein (Chromos...    45   0.003
tr|A9RWQ8|A9RWQ8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.12 
tr|A9TS65|A9TS65_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.16 
tr|B7U9U3|B7U9U3_CARAS AT5G09995-like protein OS=Cardaminopsis a...    38   0.47 
tr|Q3E9J0|Q3E9J0_ARATH Uncharacterized protein At5g09995.2 OS=Ar...    36   1.4  
tr|Q8LEC8|Q8LEC8_ARATH Putative uncharacterized protein OS=Arabi...    35   3.0  
tr|Q8GW90|Q8GW90_ARATH Putative uncharacterized protein (Putativ...    35   3.0  
tr|A2GBY5|A2GBY5_TRIVA Putative uncharacterized protein OS=Trich...    34   6.9  
tr|Q8W0W8|Q8W0W8_WHEAT Repressor protein OS=Triticum aestivum GN...    33   8.8  

>tr|A9NYG4|A9NYG4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 288

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 45/97 (46%), Positives = 63/97 (64%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLTLELSDLSQEI               VGIRR+G  A+S+ +S+LQE A++P
Sbjct: 184 LSGMEISDLTLELSDLSQEISEGVRKSAQAVQAAEVGIRRIGVLASSKAISMLQERANLP 243

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGLAGMPVLSN 291
           V  ++P + +AAE T   + +A +A+L +  +P  S+
Sbjct: 244 VVTIKPAMTSAAERTSHVVQRARRAILHVISLPRFSS 280


>tr|A7QW11|A7QW11_VITVI Chromosome undetermined scaffold_197, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00007640001 PE=4 SV=1
          Length = 271

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLTLELSDLSQEI                GIR++G+ A  QT S++QE AS+P
Sbjct: 162 LSGMEISDLTLELSDLSQEIADGVSKSTQAVQAAEAGIRQIGTLARQQTASMIQERASLP 221

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGL 315
           + +++PVV  AA+ T +A+ QA K ++ +
Sbjct: 222 IISLQPVVTGAAKKTSRAVGQATKTIINM 250


>tr|Q9SJE0|Q9SJE0_ARATH T27G7.21 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 267

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 41/89 (46%), Positives = 58/89 (65%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLTLELSDLSQ+I                GI+++G+ A  QTLS+++E A++P
Sbjct: 170 LSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIEERANLP 229

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGL 315
             +++PVVA AAE T  A+  A K ++ +
Sbjct: 230 EISLQPVVAGAAEKTSHAIGSATKRLMNI 258


>tr|Q9FRS9|Q9FRS9_ARATH F22O13.1 (Putative uncharacterized protein
           At1g08530) OS=Arabidopsis thaliana GN=At1g08530 PE=2
           SV=1
          Length = 125

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 41/89 (46%), Positives = 58/89 (65%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLTLELSDLSQ+I                GI+++G+ A  QTLS+++E A++P
Sbjct: 28  LSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIEERANLP 87

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGL 315
             +++PVVA AAE T  A+  A K ++ +
Sbjct: 88  EISLQPVVAGAAEKTSHAIGSATKRLMNI 116


>tr|Q0WNC2|Q0WNC2_ARATH Putative uncharacterized protein At1g08530
           OS=Arabidopsis thaliana GN=At1g08530 PE=2 SV=1
          Length = 257

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 41/89 (46%), Positives = 58/89 (65%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLTLELSDLSQ+I                GI+++G+ A  QTLS+++E A++P
Sbjct: 160 LSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIEERANLP 219

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGL 315
             +++PVVA AAE T  A+  A K ++ +
Sbjct: 220 EISLQPVVAGAAEKTSHAIGSATKRLMNI 248


>tr|B7FJD7|B7FJD7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 257

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 40/89 (44%), Positives = 56/89 (62%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGM ISDLTLELSDLSQEI                GIR +G  A  QT+S+++E A++P
Sbjct: 152 LSGMGISDLTLELSDLSQEITEGISKSAQALQAAETGIRHIGLVAQKQTISMIEERANLP 211

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGL 315
             ++RPVV  AA  T +A+ +A K+++ +
Sbjct: 212 EISLRPVVVGAARKTSRAVGRATKSLMNM 240


>tr|A9TA14|A9TA14_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168860 PE=4 SV=1
          Length = 351

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/98 (32%), Positives = 55/98 (56%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLT+EL++L QEI                G+R++G  A+    ++ QE A +P
Sbjct: 236 LSGMEISDLTMELNELGQEISKGVRSSARVLSSAESGMRQVGGVAS----NVWQEQAVIP 291

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGLAGMPVLSNW 288
            ++++P++A  A+  R+++ Q    +  L  +  +S W
Sbjct: 292 AQSMQPILARTAKQVRESLVQTRTLIHNLQVLSRVSGW 329


>tr|A9NZB4|A9NZB4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 262

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 34/98 (34%), Positives = 48/98 (48%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASVP 402
           LSGMEISDLT+ELSDL QEI                G+R M + A   +++ LQ+ A V 
Sbjct: 147 LSGMEISDLTMELSDLGQEITEGVRRSTKAVRAAEDGLRHMTNMA---SVASLQDRAKVH 203

Query: 401 VEAVRPVVANAAETTRQAMSQAHKAVLGLAGMPVLSNW 288
            + ++P +A  A +    + Q    +  L     LS W
Sbjct: 204 ADIMKPAIARTARSLHDGIVQGRSTLKSLIAFNQLSGW 241


>tr|Q2QSG0|Q2QSG0_ORYSJ Expressed protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g24240 PE=4 SV=1
          Length = 97

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 27/59 (45%), Positives = 34/59 (57%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASV 405
           LSGMEISDLTLELSDLSQEI                G+ +M   A  Q  S+++E A++
Sbjct: 6   LSGMEISDLTLELSDLSQEIADGVNKSAKVAQAVETGLGQMRDLAMQQATSMIEERANL 64


>tr|B8BPD1|B8BPD1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38152 PE=4 SV=1
          Length = 525

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 27/59 (45%), Positives = 34/59 (57%)
 Frame = -2

Query: 581 LSGMEISDLTLELSDLSQEIXXXXXXXXXXXXXXXVGIRRMGSAAASQTLSILQEHASV 405
           LSGMEISDLTLELSDLSQEI                G+ +M   A  Q  S+++E A++
Sbjct: 434 LSGMEISDLTLELSDLSQEIADGVNKSAKVAQAVETGLGQMRDLAMQQATSMIEERANL 492